FFCP PHASE1:Hg19::chr11:6412001..6412027,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6609|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11120|TSSclassifier=W|UniProt=|association_with_transcript=331bp_to_ENST00000533196_5end|description=CAGE_peak_5_at_SMPD1_5end|id=chr11:6412001..6412027,+|ontology_enrichment_celltype=CL:0000055!3.57e-16!180;CL:0000057!5.35e-13!75|ontology_enrichment_celltype_v019=CL:0002595;6.61e-08;5!CL:0002615;6.99e-08;3|ontology_enrichment_celltype_v019_2=CL:0000057,3.62e-09,76;CL:0002595,3.50e-08,5;CL:0002615,1.09e-07,3;CL:0000136,5.81e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;4.01e-09;3!DOID:127;4.01e-09;3!DOID:0060072;6.75e-07;4|ontology_enrichment_disease_v019_2=DOID:0060084,4.18e-09,3;DOID:127,4.18e-09,3;DOID:0060072,6.96e-07,4|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004457;1.65e-12;9!UBERON:0000042;1.65e-12;9!UBERON:0003688;9.84e-10;6!UBERON:0002358;9.84e-10;6!UBERON:0003684;9.84e-10;6!UBERON:0001178;9.84e-10;6!UBERON:0003834;6.61e-08;5!UBERON:0001533;6.61e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.19e-09,6;UBERON:0002358,2.19e-09,6;UBERON:0003684,2.19e-09,6;UBERON:0001178,2.19e-09,6;UBERON:0004457,7.36e-09,12;UBERON:0000042,7.36e-09,12;UBERON:0003834,3.50e-08,5;UBERON:0001533,3.50e-08,5;UBERON:0004923,3.82e-07,66|phase1_expression=0.54503513781167,2.5692062866918,1.55049844505568,1.0007329835313,2.23480547213644,1.74467704820074,0,0.631719873426831,0.261185628199839,0,1.39560233594486,0.218441372130172,0,0.495065411840187,0.331397375727916,0.672325146451775,1.80808358407193,0.730310090387373,0.975865597581014,0.369363174230364,1.02000345622126,0.626909442956176,0,0.684372125364421,0.627713197974014,0.0764134057479513,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0.257575567634187,0.145398238779565,0,0,0.464858073811369,0,0,1.7261543539329,0.512321413058201,0,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0.659702600373432,0.199463657621632,0,0.290209238628584,0,0,0.75374599577023,1.0429658368404,0.217188844705117,0,0,0,0.211255286311942,0,0.209658645508376,0,0.150176892841506,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0,0.334372990781356,0.32592226663359,0,0,1.11410456885174,0,0,0.270803863765016,0.512365278902701,0,0,0,0.289803085735052,0.444859689486181,0,1.04535523804977,0.113309342697566,0,0,0.253019692019503,0,0,0,0.602300476311091,0.127986611154418,0,1.18388626022008,0,0,0,0.434473211648397,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0.579386075843295,0.795285947051099,0.486634870302636,0.189069634328136,1.10864698731282,0.43917392846563,0.196468613246569,0,0,0,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,1.10047216776027,0.626984899610432,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,2.43042584364528,0.267899184852239,0,0,0,0,0,0,0,0,0,1.01304409331664,0.132409180813219,4.30254931123221,1.77334191099179,0,0,1.48000529050296,0.311211035399766,0.67355336034844,0.490385709340376,0.454072282934794,0,0,0.624320153660641,0.570471821544449,0.298897361103602,0.352303495931295,0.161872944368132,0,0.61246251376468,0.737005903870608,0.929932030581889,1.18800285728205,1.97813543422845,0.910161361938026,1.43723628363248,0.336672227908132,0.500474079487857,0,1.31693286264251,1.5324389789951,1.65261864797256,0.113432183160021,1.25572744982203,0.427114777637135,0.211931901159562,1.50045548042201,1.23663035086127,0.772921620136887,0.18611685633159,0.675105328965065,0.487185025805993,0.252433774244115,0.460249493211497,0.80823028409406,0.710019185033229,0.906768884048762,0.508681776931463,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0.236613600079688,0.505754070234305,0,0.220587945464788,0.435758888184812,0.474541238222193,0.134831308160164,0.392442930250692,0,0,0,0,1.47008711385542,1.26755034821831,0.982827216677626,1.18157981336281,0.441463099414651,0.122988438543114,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0.325808305310325,0,0,0,0.117408694235822,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0.445893486866185,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0.144119953416961,0.50496973370552,0.253991577168676,0.381988425558278,0,1.71072446022705,0.514137463516618,0.300343057843917,0.571652865261156,0,0.43596006883328,0.2933531432838,0.646358578788889,0,0,0.26593811658487,2.08014873822732,0,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.301439377059586,1.74306691720059,1.09970290300263,1.2162378064119,0,0,0.239624855491583,0,0,1.01346914667305,2.67119219315498,0.179060963239896,0,0.394061520403854,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0,0.637938751653163,0,5.9832291840805,0,0.24538298343828,1.00034104211935,0,0.623912584592421,0.713715955188647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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6609 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11120 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=331bp_to_ENST00000533196_5end | |||
|description=CAGE_peak_5_at_SMPD1_5end | |||
|id=chr11:6412001..6412027,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.57e-16!180;CL:0000057!5.35e-13!75 | |||
|ontology_enrichment_celltype_v019=CL:0002595;6.61e-08;5!CL:0002615;6.99e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.62e-09,76;CL:0002595,3.50e-08,5;CL:0002615,1.09e-07,3;CL:0000136,5.81e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.01e-09;3!DOID:127;4.01e-09;3!DOID:0060072;6.75e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.18e-09,3;DOID:127,4.18e-09,3;DOID:0060072,6.96e-07,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.65e-12;9!UBERON:0000042;1.65e-12;9!UBERON:0003688;9.84e-10;6!UBERON:0002358;9.84e-10;6!UBERON:0003684;9.84e-10;6!UBERON:0001178;9.84e-10;6!UBERON:0003834;6.61e-08;5!UBERON:0001533;6.61e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.19e-09,6;UBERON:0002358,2.19e-09,6;UBERON:0003684,2.19e-09,6;UBERON:0001178,2.19e-09,6;UBERON:0004457,7.36e-09,12;UBERON:0000042,7.36e-09,12;UBERON:0003834,3.50e-08,5;UBERON:0001533,3.50e-08,5;UBERON:0004923,3.82e-07,66 | |||
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| |||
|short_description=p5@SMPD1 | |||
}} |
Revision as of 18:45, 10 September 2013
Short description: | p5@SMPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SMPD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 331bp_to_ENST00000533196_5end |
EntrezGene: | SMPD1 |
HGNC: | 11120 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.62e-09 | 76 |
smooth muscle cell of the subclavian artery | 3.50e-08 | 5 |
adipocyte of omentum tissue | 1.09e-07 | 3 |
fat cell | 5.81e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.19e-09 | 6 |
peritoneum | 2.19e-09 | 6 |
abdominal cavity | 2.19e-09 | 6 |
visceral peritoneum | 2.19e-09 | 6 |
cavity lining | 7.36e-09 | 12 |
serous membrane | 7.36e-09 | 12 |
thoracic segment blood vessel | 3.50e-08 | 5 |
subclavian artery | 3.50e-08 | 5 |
organ component layer | 3.82e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.18e-09 | 3 |
leiomyoma | 4.18e-09 | 3 |
benign neoplasm | 6.96e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.