FFCP PHASE1:Hg19::chr11:70952310..70952311,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22941|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14295|TSSclassifier=N|UniProt=|association_with_transcript=-340bp_to_ENST00000482659_5end|coexpression_cluster_id=C513|description=CAGE_peak_24_at_SHANK2_5end|id=chr11:70952310..70952311,-|ontology_enrichment_celltype=CL:0000223!3.03e-14!59;CL:0000066!1.01e-13!254;CL:0002202!7.12e-12!9;CL:0002632!7.12e-12!9;CL:0002076!7.27e-12!43;CL:0002368!1.09e-10!13;CL:0000082!2.22e-08!19|ontology_enrichment_celltype_v019=CL:0002535;5.96e-34;2!CL:0000307;2.62e-23;3!CL:0002202;1.04e-08;9!CL:0002632;1.04e-08;9|ontology_enrichment_celltype_v019_2=CL:0002535,5.04e-34,2;CL:0000068,2.62e-23,3;CL:0000069,2.62e-23,3;CL:0000307,2.62e-23,3;CL:0000377,2.62e-23,3;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9;CL:0002076,2.10e-07,42|ontology_enrichment_development_v019=CL:0000377;2.62e-23;3|ontology_enrichment_disease=DOID:0050687!1.16e-19!143;DOID:305!1.28e-18!106;DOID:1749!6.05e-16!14;DOID:14566!3.80e-12!239;DOID:162!7.59e-12!235|ontology_enrichment_disease_v019=DOID:4362;1.71e-14;5|ontology_enrichment_disease_v019_2=DOID:4362,1.60e-14,5|ontology_enrichment_uberon=UBERON:0004802!2.22e-08!19;UBERON:0000115!2.22e-08!19;UBERON:0001041!3.75e-08!98;UBERON:0001007!1.01e-07!155;UBERON:0001555!1.01e-07!155;UBERON:0007026!1.01e-07!155;UBERON:0000466!2.21e-07!126;UBERON:0002114!2.42e-07!12;UBERON:0007196!2.46e-07!14;UBERON:0001558!2.46e-07!14;UBERON:0004119!3.00e-07!169;UBERON:0000925!3.00e-07!169;UBERON:0006595!3.00e-07!169;UBERON:0001048!3.27e-07!168;UBERON:0004921!4.32e-07!129;UBERON:0004185!4.32e-07!129;UBERON:0001264!4.64e-07!10;UBERON:0003922!4.64e-07!10;UBERON:0003923!4.64e-07!10;UBERON:0003924!4.64e-07!10;UBERON:0003921!4.64e-07!10;UBERON:0002048!4.76e-07!22;UBERON:0000117!4.76e-07!22;UBERON:0000171!4.76e-07!22;UBERON:0000170!4.76e-07!22;UBERON:0005597!4.76e-07!22;UBERON:0000118!4.76e-07!22;UBERON:0005153!5.85e-07!37;UBERON:0008947!6.52e-07!38;UBERON:0003258!6.52e-07!38|ontology_enrichment_uberon_v019=UBERON:0006562;5.96e-34;2!UBERON:0006955;5.96e-34;2!UBERON:0004801;5.96e-34;2!UBERON:0000002;2.59e-12;6!UBERON:0001560;2.59e-12;6!UBERON:0003126;8.16e-11;7!UBERON:0001005;8.16e-11;7|ontology_enrichment_uberon_v019_2=UBERON:0006955,5.04e-34,2;UBERON:0004801,5.04e-34,2;UBERON:0000002,2.45e-12,6;UBERON:0001560,2.45e-12,6;UBERON:0003126,8.16e-11,7;UBERON:0001005,8.16e-11,7;UBERON:0006562,2.63e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0,0,0.464841513839837,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0.551346289938122,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,7.62236894029258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.437299999980979,0,0.341380344856499,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0.23056390438806,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0.173559738335131,0,1.04471047896483,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.432164393964449,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0,0,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0.550285795565037,0,0,0,0,0,0,0,0.261906694481422,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0,0,0.179650404213174,0,0,0,0,0,0|short_description=p24@SHANK2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=22941 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14295 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-340bp_to_ENST00000482659_5end | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_24_at_SHANK2_5end | |||
|id=chr11:70952310..70952311,- | |||
|ontology_enrichment_celltype=CL:0000223!3.03e-14!59;CL:0000066!1.01e-13!254;CL:0002202!7.12e-12!9;CL:0002632!7.12e-12!9;CL:0002076!7.27e-12!43;CL:0002368!1.09e-10!13;CL:0000082!2.22e-08!19 | |||
|ontology_enrichment_celltype_v019=CL:0002535;5.96e-34;2!CL:0000307;2.62e-23;3!CL:0002202;1.04e-08;9!CL:0002632;1.04e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,5.04e-34,2;CL:0000068,2.62e-23,3;CL:0000069,2.62e-23,3;CL:0000307,2.62e-23,3;CL:0000377,2.62e-23,3;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9;CL:0002076,2.10e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000377;2.62e-23;3 | |||
|ontology_enrichment_disease=DOID:0050687!1.16e-19!143;DOID:305!1.28e-18!106;DOID:1749!6.05e-16!14;DOID:14566!3.80e-12!239;DOID:162!7.59e-12!235 | |||
|ontology_enrichment_disease_v019=DOID:4362;1.71e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.60e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0004802!2.22e-08!19;UBERON:0000115!2.22e-08!19;UBERON:0001041!3.75e-08!98;UBERON:0001007!1.01e-07!155;UBERON:0001555!1.01e-07!155;UBERON:0007026!1.01e-07!155;UBERON:0000466!2.21e-07!126;UBERON:0002114!2.42e-07!12;UBERON:0007196!2.46e-07!14;UBERON:0001558!2.46e-07!14;UBERON:0004119!3.00e-07!169;UBERON:0000925!3.00e-07!169;UBERON:0006595!3.00e-07!169;UBERON:0001048!3.27e-07!168;UBERON:0004921!4.32e-07!129;UBERON:0004185!4.32e-07!129;UBERON:0001264!4.64e-07!10;UBERON:0003922!4.64e-07!10;UBERON:0003923!4.64e-07!10;UBERON:0003924!4.64e-07!10;UBERON:0003921!4.64e-07!10;UBERON:0002048!4.76e-07!22;UBERON:0000117!4.76e-07!22;UBERON:0000171!4.76e-07!22;UBERON:0000170!4.76e-07!22;UBERON:0005597!4.76e-07!22;UBERON:0000118!4.76e-07!22;UBERON:0005153!5.85e-07!37;UBERON:0008947!6.52e-07!38;UBERON:0003258!6.52e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0006562;5.96e-34;2!UBERON:0006955;5.96e-34;2!UBERON:0004801;5.96e-34;2!UBERON:0000002;2.59e-12;6!UBERON:0001560;2.59e-12;6!UBERON:0003126;8.16e-11;7!UBERON:0001005;8.16e-11;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,5.04e-34,2;UBERON:0004801,5.04e-34,2;UBERON:0000002,2.45e-12,6;UBERON:0001560,2.45e-12,6;UBERON:0003126,8.16e-11,7;UBERON:0001005,8.16e-11,7;UBERON:0006562,2.63e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0,0,0.464841513839837,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0.551346289938122,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,7.62236894029258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.437299999980979,0,0.341380344856499,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0.23056390438806,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0.173559738335131,0,1.04471047896483,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.432164393964449,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0,0,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0.550285795565037,0,0,0,0,0,0,0,0.261906694481422,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0,0,0.179650404213174,0,0,0,0,0,0 | |||
|short_description=p24@SHANK2 | |||
}} |
Revision as of 19:27, 10 September 2013
Short description: | p24@SHANK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_SHANK2_5end |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | -340bp_to_ENST00000482659_5end |
EntrezGene: | SHANK2 |
HGNC: | 14295 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 5.04e-34 | 2 |
duct epithelial cell | 2.62e-23 | 3 |
branched duct epithelial cell | 2.62e-23 | 3 |
tracheal epithelial cell | 2.62e-23 | 3 |
tracheoblast | 2.62e-23 | 3 |
epithelial cell of tracheobronchial tree | 1.04e-08 | 9 |
epithelial cell of lower respiratory tract | 1.04e-08 | 9 |
endo-epithelial cell | 2.10e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 5.04e-34 | 2 |
cervix epithelium | 5.04e-34 | 2 |
uterine cervix | 2.45e-12 | 6 |
neck of organ | 2.45e-12 | 6 |
trachea | 8.16e-11 | 7 |
respiratory airway | 8.16e-11 | 7 |
pharynx | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.60e-14 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.