FFCP PHASE1:Hg19::chr12:50643664..50643679,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51474|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24636|TSSclassifier=S|UniProt=F8VVQ7|association_with_transcript=0bp_to_ENST00000550592_5end|coexpression_cluster_id=C68|description=CAGE_peak_23_at_LIMA1_5end|id=chr12:50643664..50643679,-|ontology_enrichment_celltype=CL:0000223!6.45e-07!59|ontology_enrichment_celltype_v019=CL:0002537;9.46e-27;5!CL:0002541;5.91e-20;3!CL:0000349;5.72e-19;19!CL:0000945;1.06e-09;24|ontology_enrichment_celltype_v019_2=CL:0002537,9.89e-27,5;CL:0002541,4.88e-20,3;CL:0000349,5.41e-19,19;CL:0000945,9.00e-10,24;CL:0000826,9.00e-10,24|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2355;1.07e-15;1!DOID:74;1.67e-08;2!DOID:4074;2.40e-08;2!DOID:4905;2.40e-08;2!DOID:3498;2.40e-08;2|ontology_enrichment_disease_v019_2=DOID:2355,9.99e-16,1;DOID:74,1.61e-08,2;DOID:4074,2.48e-08,2;DOID:4905,2.48e-08,2;DOID:3498,2.48e-08,2|ontology_enrichment_uberon=UBERON:0005631!3.01e-10!14;UBERON:0000158!3.01e-10!14;UBERON:0000478!9.48e-07!24|ontology_enrichment_uberon_v019=UBERON:0005631;6.39e-36;10!UBERON:0000158;6.39e-36;10!UBERON:0003124;5.91e-20;3!UBERON:0000920;5.91e-20;3!UBERON:0000305;2.58e-19;7!UBERON:0000478;4.99e-15;24|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.71e-26,14;UBERON:0000158,9.71e-26,14;UBERON:0000920,4.88e-20,3;UBERON:0000305,2.66e-19,7;UBERON:0004871,5.67e-17,8;UBERON:0000478,4.77e-15,24;UBERON:0003124,3.88e-09,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,1.60468152070698,1.64201178899891,1.57421562627358,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.27470839445503,0.82509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,12.1759687216222,4.45447021248958,6.75753544618311,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,4.78501739597879,0,1.5991043280559,0,0,0,0.225595660617181,0,0,0,0,0,0.652931232636591,0,0.216388639742091,0,0.0884575645033392,0,0,0.370691816839509,0,0,0,0,0,0.19566461893209,1.45668227720456,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.202210631562555,0.295282444544246,2.96356662230246,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0.983091635014877,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0.514464028312255,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,1.13668047327359,0.803892390468535,0,0,0,0,0.193766729508018,0.372448285775147,0,0,0,0,0,0.202056159043763,0.215166616178029,0,0,0,0,0.269475606319761,0,0,0,0,0,0.641136984606466|short_description=p23@LIMA1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=51474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24636 | |||
|TSSclassifier=S | |||
|UniProt=F8VVQ7 | |||
|association_with_transcript=0bp_to_ENST00000550592_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_23_at_LIMA1_5end | |||
|id=chr12:50643664..50643679,- | |||
|ontology_enrichment_celltype=CL:0000223!6.45e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002537;9.46e-27;5!CL:0002541;5.91e-20;3!CL:0000349;5.72e-19;19!CL:0000945;1.06e-09;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,9.89e-27,5;CL:0002541,4.88e-20,3;CL:0000349,5.41e-19,19;CL:0000945,9.00e-10,24;CL:0000826,9.00e-10,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2355;1.07e-15;1!DOID:74;1.67e-08;2!DOID:4074;2.40e-08;2!DOID:4905;2.40e-08;2!DOID:3498;2.40e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,9.99e-16,1;DOID:74,1.61e-08,2;DOID:4074,2.48e-08,2;DOID:4905,2.48e-08,2;DOID:3498,2.48e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.01e-10!14;UBERON:0000158!3.01e-10!14;UBERON:0000478!9.48e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.39e-36;10!UBERON:0000158;6.39e-36;10!UBERON:0003124;5.91e-20;3!UBERON:0000920;5.91e-20;3!UBERON:0000305;2.58e-19;7!UBERON:0000478;4.99e-15;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.71e-26,14;UBERON:0000158,9.71e-26,14;UBERON:0000920,4.88e-20,3;UBERON:0000305,2.66e-19,7;UBERON:0004871,5.67e-17,8;UBERON:0000478,4.77e-15,24;UBERON:0003124,3.88e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,1.60468152070698,1.64201178899891,1.57421562627358,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.27470839445503,0.82509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,12.1759687216222,4.45447021248958,6.75753544618311,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,4.78501739597879,0,1.5991043280559,0,0,0,0.225595660617181,0,0,0,0,0,0.652931232636591,0,0.216388639742091,0,0.0884575645033392,0,0,0.370691816839509,0,0,0,0,0,0.19566461893209,1.45668227720456,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.202210631562555,0.295282444544246,2.96356662230246,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0.983091635014877,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0.514464028312255,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,1.13668047327359,0.803892390468535,0,0,0,0,0.193766729508018,0.372448285775147,0,0,0,0,0,0.202056159043763,0.215166616178029,0,0,0,0,0.269475606319761,0,0,0,0,0,0.641136984606466 | |||
|short_description=p23@LIMA1 | |||
}} |
Revision as of 22:59, 10 September 2013
Short description: | p23@LIMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_23_at_LIMA1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000550592_5end |
EntrezGene: | LIMA1 |
HGNC: | 24636 |
UniProt: | F8VVQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 9.89e-27 | 5 |
chorionic membrane mesenchymal stem cell | 4.88e-20 | 3 |
extraembryonic cell | 5.41e-19 | 19 |
lymphocyte of B lineage | 9.00e-10 | 24 |
pro-B cell | 9.00e-10 | 24 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.71e-26 | 14 |
membranous layer | 9.71e-26 | 14 |
egg chorion | 4.88e-20 | 3 |
amnion | 2.66e-19 | 7 |
somatic layer of lateral plate mesoderm | 5.67e-17 | 8 |
extraembryonic structure | 4.77e-15 | 24 |
chorion | 3.88e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
anemia | 9.99e-16 | 1 |
hematopoietic system disease | 1.61e-08 | 2 |
pancreas adenocarcinoma | 2.48e-08 | 2 |
pancreatic carcinoma | 2.48e-08 | 2 |
pancreatic ductal adenocarcinoma | 2.48e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.