FFCP PHASE1:Hg19::chr18:61254548..61254562,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5275|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8944|TSSclassifier=S|UniProt=F5GZ40,Q9UIV8|association_with_transcript=14bp_to_,-14bp_to_ENST00000269489,ENST00000539341,NM_012397,uc002ljc.2,uc002ljd.2,uc010xep.1,uc010xeq.1,uc010xer.1_5end|coexpression_cluster_id=C820|description=CAGE_peak_3_at_SERPINB13_5end|id=chr18:61254548..61254562,+|ontology_enrichment_celltype=CL:0002076!2.25e-23!43;CL:0002159!3.71e-19!13;CL:0002251!3.18e-18!21;CL:0000223!4.06e-17!59;CL:0000066!2.23e-13!254;CL:0000622!4.73e-13!5;CL:0000244!3.90e-11!4;CL:0000731!3.90e-11!4;CL:0000076!6.19e-11!62;CL:0000154!8.13e-11!6;CL:0002077!2.76e-09!33;CL:0002621!5.74e-09!3;CL:0002166!8.81e-09!3;CL:0002368!9.31e-09!13;CL:0000362!2.05e-08!8;CL:0002623!6.13e-08!3;CL:0000240!2.02e-07!6;CL:0000311!2.02e-07!6;CL:0000079!2.02e-07!6;CL:0000237!2.02e-07!6;CL:0000036!2.02e-07!6;CL:0000357!2.02e-07!6;CL:0000114!2.02e-07!6;CL:0000150!4.38e-07!9;CL:0000317!8.36e-07!2;CL:1000448!8.36e-07!2;CL:0002308!8.36e-07!2;CL:0002140!8.36e-07!2|ontology_enrichment_celltype_v019=CL:0002159;2.43e-20;14!CL:0002621;1.19e-14;3!CL:0000244;3.47e-11;4!CL:0000731;3.47e-11;4!CL:0000317;9.63e-11;2!CL:1000448;9.63e-11;2!CL:0002308;9.63e-11;2!CL:0002140;9.63e-11;2!CL:0002077;2.47e-10;34!CL:0000575;3.45e-10;2!CL:0000362;8.86e-09;9!CL:0002076;3.96e-08;42!CL:0002251;4.54e-08;20!CL:0000240;8.21e-08;6!CL:0000311;8.21e-08;6!CL:0000079;8.21e-08;6!CL:0000237;8.21e-08;6!CL:0002166;4.54e-07;3|ontology_enrichment_celltype_v019_2=CL:0002159,2.28e-20,14;CL:0002621,1.28e-14,3;CL:0002077,4.60e-12,34;CL:0000244,3.01e-11,4;CL:0000731,3.01e-11,4;CL:0000317,8.12e-11,2;CL:1000448,8.12e-11,2;CL:0002308,8.12e-11,2;CL:0002140,8.12e-11,2;CL:0000575,3.14e-10,2;CL:0000076,3.25e-10,63;CL:0000362,9.73e-09,9;CL:0000066,1.65e-08,253;CL:0002251,5.05e-08,20;CL:0000240,1.01e-07,6;CL:0000311,1.01e-07,6;CL:0000079,1.01e-07,6;CL:0000237,1.01e-07,6;CL:0000036,1.01e-07,6;CL:0000357,1.01e-07,6;CL:0000114,1.01e-07,6;CL:0002076,1.47e-07,42;CL:0002166,3.88e-07,3|ontology_enrichment_development_v019=CL:0000357;8.21e-08;6!CL:0000114;8.21e-08;6|ontology_enrichment_disease=DOID:1749!2.42e-21!14|ontology_enrichment_disease_v019=DOID:1749;3.10e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,3.39e-12,14|ontology_enrichment_uberon=UBERON:0001004!2.12e-22!72;UBERON:0000166!9.78e-22!21;UBERON:0000161!1.12e-19!35;UBERON:0000165!5.66e-18!28;UBERON:0000930!5.66e-18!28;UBERON:0000974!2.48e-15!10;UBERON:0004119!5.74e-15!169;UBERON:0000925!5.74e-15!169;UBERON:0006595!5.74e-15!169;UBERON:0003102!2.13e-14!95;UBERON:0003729!2.28e-13!5;UBERON:0000365!3.12e-13!5;UBERON:0001444!6.92e-12!48;UBERON:0000065!2.73e-11!53;UBERON:0006562!4.02e-11!11;UBERON:0005910!5.78e-11!6;UBERON:0003343!8.12e-11!4;UBERON:0004785!8.12e-11!4;UBERON:0000344!4.21e-10!12;UBERON:0001007!2.10e-09!155;UBERON:0001555!2.10e-09!155;UBERON:0007026!2.10e-09!155;UBERON:0001723!2.68e-09!3;UBERON:0001033!2.68e-09!3;UBERON:0010056!2.68e-09!3;UBERON:0001042!3.10e-09!10;UBERON:0009145!3.10e-09!10;UBERON:0001949!5.74e-09!3;UBERON:0000078!3.55e-08!18;UBERON:0003408!3.89e-08!10;UBERON:0002419!8.36e-07!2;UBERON:0007771!8.36e-07!2;UBERON:0003297!8.36e-07!2;UBERON:0001821!8.36e-07!2;UBERON:0003487!8.36e-07!2;UBERON:0001820!8.36e-07!2;UBERON:0005089!8.36e-07!2;UBERON:0005088!8.36e-07!2;UBERON:0003127!9.09e-07!2|ontology_enrichment_uberon_v019=UBERON:0001949;1.19e-14;3!UBERON:0000486;1.50e-13;12!UBERON:0002419;9.63e-11;2!UBERON:0007771;9.63e-11;2!UBERON:0003297;9.63e-11;2!UBERON:0001821;9.63e-11;2!UBERON:0003487;9.63e-11;2!UBERON:0001820;9.63e-11;2!UBERON:0003127;1.20e-10;2!UBERON:0000165;4.79e-10;28!UBERON:0003729;4.28e-09;13!UBERON:0000365;4.82e-09;5!UBERON:0000344;3.23e-08;20!UBERON:0000002;3.24e-08;6!UBERON:0001560;3.24e-08;6!UBERON:0001723;8.10e-08;3!UBERON:0001033;8.10e-08;3!UBERON:0005910;1.31e-07;6!UBERON:0001043;1.67e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.28e-14,3;UBERON:0002419,8.12e-11,2;UBERON:0007771,8.12e-11,2;UBERON:0003297,8.12e-11,2;UBERON:0001821,8.12e-11,2;UBERON:0003487,8.12e-11,2;UBERON:0001820,8.12e-11,2;UBERON:0005089,8.12e-11,2;UBERON:0005088,8.12e-11,2;UBERON:0003127,9.41e-11,2;UBERON:0000153,1.98e-10,62;UBERON:0007811,1.98e-10,62;UBERON:0003102,2.99e-10,99;UBERON:0000166,4.32e-10,22;UBERON:0000033,6.34e-10,56;UBERON:0000165,1.24e-09,29;UBERON:0000930,1.24e-09,29;UBERON:0000365,4.31e-09,5;UBERON:0003729,4.47e-09,13;UBERON:0000002,3.24e-08,6;UBERON:0001560,3.24e-08,6;UBERON:0000344,3.39e-08,20;UBERON:0001444,4.70e-08,49;UBERON:0001723,8.24e-08,3;UBERON:0001033,8.24e-08,3;UBERON:0010056,8.24e-08,3;UBERON:0005910,1.19e-07,6;UBERON:0001043,1.99e-07,3;UBERON:0009143,1.99e-07,3;UBERON:0001004,5.72e-07,74|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5275 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8944 | |||
|TSSclassifier=S | |||
|UniProt=F5GZ40,Q9UIV8 | |||
|association_with_transcript=14bp_to_,-14bp_to_ENST00000269489,ENST00000539341,NM_012397,uc002ljc.2,uc002ljd.2,uc010xep.1,uc010xeq.1,uc010xer.1_5end | |||
|coexpression_cluster_id=C820 | |||
|description=CAGE_peak_3_at_SERPINB13_5end | |||
|id=chr18:61254548..61254562,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.25e-23!43;CL:0002159!3.71e-19!13;CL:0002251!3.18e-18!21;CL:0000223!4.06e-17!59;CL:0000066!2.23e-13!254;CL:0000622!4.73e-13!5;CL:0000244!3.90e-11!4;CL:0000731!3.90e-11!4;CL:0000076!6.19e-11!62;CL:0000154!8.13e-11!6;CL:0002077!2.76e-09!33;CL:0002621!5.74e-09!3;CL:0002166!8.81e-09!3;CL:0002368!9.31e-09!13;CL:0000362!2.05e-08!8;CL:0002623!6.13e-08!3;CL:0000240!2.02e-07!6;CL:0000311!2.02e-07!6;CL:0000079!2.02e-07!6;CL:0000237!2.02e-07!6;CL:0000036!2.02e-07!6;CL:0000357!2.02e-07!6;CL:0000114!2.02e-07!6;CL:0000150!4.38e-07!9;CL:0000317!8.36e-07!2;CL:1000448!8.36e-07!2;CL:0002308!8.36e-07!2;CL:0002140!8.36e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.43e-20;14!CL:0002621;1.19e-14;3!CL:0000244;3.47e-11;4!CL:0000731;3.47e-11;4!CL:0000317;9.63e-11;2!CL:1000448;9.63e-11;2!CL:0002308;9.63e-11;2!CL:0002140;9.63e-11;2!CL:0002077;2.47e-10;34!CL:0000575;3.45e-10;2!CL:0000362;8.86e-09;9!CL:0002076;3.96e-08;42!CL:0002251;4.54e-08;20!CL:0000240;8.21e-08;6!CL:0000311;8.21e-08;6!CL:0000079;8.21e-08;6!CL:0000237;8.21e-08;6!CL:0002166;4.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.28e-20,14;CL:0002621,1.28e-14,3;CL:0002077,4.60e-12,34;CL:0000244,3.01e-11,4;CL:0000731,3.01e-11,4;CL:0000317,8.12e-11,2;CL:1000448,8.12e-11,2;CL:0002308,8.12e-11,2;CL:0002140,8.12e-11,2;CL:0000575,3.14e-10,2;CL:0000076,3.25e-10,63;CL:0000362,9.73e-09,9;CL:0000066,1.65e-08,253;CL:0002251,5.05e-08,20;CL:0000240,1.01e-07,6;CL:0000311,1.01e-07,6;CL:0000079,1.01e-07,6;CL:0000237,1.01e-07,6;CL:0000036,1.01e-07,6;CL:0000357,1.01e-07,6;CL:0000114,1.01e-07,6;CL:0002076,1.47e-07,42;CL:0002166,3.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;8.21e-08;6!CL:0000114;8.21e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!2.42e-21!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.10e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.39e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.12e-22!72;UBERON:0000166!9.78e-22!21;UBERON:0000161!1.12e-19!35;UBERON:0000165!5.66e-18!28;UBERON:0000930!5.66e-18!28;UBERON:0000974!2.48e-15!10;UBERON:0004119!5.74e-15!169;UBERON:0000925!5.74e-15!169;UBERON:0006595!5.74e-15!169;UBERON:0003102!2.13e-14!95;UBERON:0003729!2.28e-13!5;UBERON:0000365!3.12e-13!5;UBERON:0001444!6.92e-12!48;UBERON:0000065!2.73e-11!53;UBERON:0006562!4.02e-11!11;UBERON:0005910!5.78e-11!6;UBERON:0003343!8.12e-11!4;UBERON:0004785!8.12e-11!4;UBERON:0000344!4.21e-10!12;UBERON:0001007!2.10e-09!155;UBERON:0001555!2.10e-09!155;UBERON:0007026!2.10e-09!155;UBERON:0001723!2.68e-09!3;UBERON:0001033!2.68e-09!3;UBERON:0010056!2.68e-09!3;UBERON:0001042!3.10e-09!10;UBERON:0009145!3.10e-09!10;UBERON:0001949!5.74e-09!3;UBERON:0000078!3.55e-08!18;UBERON:0003408!3.89e-08!10;UBERON:0002419!8.36e-07!2;UBERON:0007771!8.36e-07!2;UBERON:0003297!8.36e-07!2;UBERON:0001821!8.36e-07!2;UBERON:0003487!8.36e-07!2;UBERON:0001820!8.36e-07!2;UBERON:0005089!8.36e-07!2;UBERON:0005088!8.36e-07!2;UBERON:0003127!9.09e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.19e-14;3!UBERON:0000486;1.50e-13;12!UBERON:0002419;9.63e-11;2!UBERON:0007771;9.63e-11;2!UBERON:0003297;9.63e-11;2!UBERON:0001821;9.63e-11;2!UBERON:0003487;9.63e-11;2!UBERON:0001820;9.63e-11;2!UBERON:0003127;1.20e-10;2!UBERON:0000165;4.79e-10;28!UBERON:0003729;4.28e-09;13!UBERON:0000365;4.82e-09;5!UBERON:0000344;3.23e-08;20!UBERON:0000002;3.24e-08;6!UBERON:0001560;3.24e-08;6!UBERON:0001723;8.10e-08;3!UBERON:0001033;8.10e-08;3!UBERON:0005910;1.31e-07;6!UBERON:0001043;1.67e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.28e-14,3;UBERON:0002419,8.12e-11,2;UBERON:0007771,8.12e-11,2;UBERON:0003297,8.12e-11,2;UBERON:0001821,8.12e-11,2;UBERON:0003487,8.12e-11,2;UBERON:0001820,8.12e-11,2;UBERON:0005089,8.12e-11,2;UBERON:0005088,8.12e-11,2;UBERON:0003127,9.41e-11,2;UBERON:0000153,1.98e-10,62;UBERON:0007811,1.98e-10,62;UBERON:0003102,2.99e-10,99;UBERON:0000166,4.32e-10,22;UBERON:0000033,6.34e-10,56;UBERON:0000165,1.24e-09,29;UBERON:0000930,1.24e-09,29;UBERON:0000365,4.31e-09,5;UBERON:0003729,4.47e-09,13;UBERON:0000002,3.24e-08,6;UBERON:0001560,3.24e-08,6;UBERON:0000344,3.39e-08,20;UBERON:0001444,4.70e-08,49;UBERON:0001723,8.24e-08,3;UBERON:0001033,8.24e-08,3;UBERON:0010056,8.24e-08,3;UBERON:0005910,1.19e-07,6;UBERON:0001043,1.99e-07,3;UBERON:0009143,1.99e-07,3;UBERON:0001004,5.72e-07,74 | |||
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|short_description=p3@SERPINB13 | |||
}} |
Revision as of 18:01, 11 September 2013
Short description: | p3@SERPINB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SERPINB13_5end |
Coexpression cluster: | C820_cervical_tongue_esophagus_throat_tonsil_oral_uterus |
Association with transcript: | 14bp_to_, -14bp_to_ENST00000269489, ENST00000539341, NM_012397, uc002ljc.2, uc002ljd.2, uc010xep.1, uc010xeq.1, uc010xer.1_5end |
EntrezGene: | SERPINB13 |
HGNC: | 8944 |
UniProt: | F5GZ40Q9UIV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.28e-20 | 14 |
gingival epithelial cell | 1.28e-14 | 3 |
ecto-epithelial cell | 4.60e-12 | 34 |
transitional epithelial cell | 3.01e-11 | 4 |
urothelial cell | 3.01e-11 | 4 |
sebum secreting cell | 8.12e-11 | 2 |
epithelial cell of sweat gland | 8.12e-11 | 2 |
epithelial cell of skin gland | 8.12e-11 | 2 |
acinar cell of sebaceous gland | 8.12e-11 | 2 |
corneal epithelial cell | 3.14e-10 | 2 |
squamous epithelial cell | 3.25e-10 | 63 |
epidermal cell | 9.73e-09 | 9 |
epithelial cell | 1.65e-08 | 253 |
epithelial cell of alimentary canal | 5.05e-08 | 20 |
stratified squamous epithelial cell | 1.01e-07 | 6 |
keratin accumulating cell | 1.01e-07 | 6 |
stratified epithelial cell | 1.01e-07 | 6 |
keratinizing barrier epithelial cell | 1.01e-07 | 6 |
epithelial fate stem cell | 1.01e-07 | 6 |
stratified epithelial stem cell | 1.01e-07 | 6 |
surface ectodermal cell | 1.01e-07 | 6 |
endo-epithelial cell | 1.47e-07 | 42 |
epithelial cell of Malassez | 3.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.28e-14 | 3 |
skin gland | 8.12e-11 | 2 |
epidermis gland | 8.12e-11 | 2 |
gland of integumental system | 8.12e-11 | 2 |
sebaceous gland | 8.12e-11 | 2 |
skin sebaceous gland | 8.12e-11 | 2 |
sweat gland | 8.12e-11 | 2 |
sweat gland placode | 8.12e-11 | 2 |
sebaceous gland placode | 8.12e-11 | 2 |
open tracheal system trachea | 9.41e-11 | 2 |
anterior region of body | 1.98e-10 | 62 |
craniocervical region | 1.98e-10 | 62 |
surface structure | 2.99e-10 | 99 |
oral opening | 4.32e-10 | 22 |
head | 6.34e-10 | 56 |
mouth | 1.24e-09 | 29 |
stomodeum | 1.24e-09 | 29 |
urothelium | 4.31e-09 | 5 |
mouth mucosa | 4.47e-09 | 13 |
uterine cervix | 3.24e-08 | 6 |
neck of organ | 3.24e-08 | 6 |
mucosa | 3.39e-08 | 20 |
subdivision of head | 4.70e-08 | 49 |
tongue | 8.24e-08 | 3 |
gustatory system | 8.24e-08 | 3 |
future tongue | 8.24e-08 | 3 |
transitional epithelium | 1.19e-07 | 6 |
esophagus | 1.99e-07 | 3 |
esophageal region | 1.99e-07 | 3 |
respiratory system | 5.72e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.39e-12 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.