FFCP PHASE1:Hg19::chr1:221220442..221220467,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C651|description=CAGE_peak_at_chr1:221220442..221220467,+|id=chr1:221220442..221220467,+|ontology_enrichment_celltype=CL:0000945!3.04e-72!24;CL:0000826!3.04e-72!24;CL:0000542!5.52e-43!53;CL:0000051!5.52e-43!53;CL:0000236!8.47e-42!14;CL:0000838!3.90e-40!52;CL:0000738!9.09e-28!140;CL:0002087!1.70e-25!119;CL:0002031!4.85e-24!124;CL:0002032!2.36e-22!165;CL:0000837!2.36e-22!165;CL:0000037!4.04e-21!172;CL:0000566!4.04e-21!172;CL:0000988!1.61e-19!182;CL:0000990!4.24e-16!8;CL:0000453!6.41e-14!5;CL:0000451!4.69e-13!10;CL:0000785!3.53e-09!2;CL:0000955!3.53e-09!2;CL:0000818!3.53e-09!2;CL:0000954!3.53e-09!2;CL:0000816!3.53e-09!2|ontology_enrichment_celltype_v019=CL:0000945;1.40e-85;24!CL:0000236;7.66e-63;13!CL:0000542;1.09e-28;53!CL:0000453;4.47e-16;5!CL:0000946;1.99e-09;1!CL:0000786;1.99e-09;1!CL:0000990;3.65e-09;8!CL:0000451;1.40e-07;10|ontology_enrichment_celltype_v019_2=CL:0000945,1.33e-85,24;CL:0000826,1.33e-85,24;CL:0000236,2.42e-70,14;CL:0000542,2.18e-42,53;CL:0000051,2.18e-42,53;CL:0000838,4.23e-38,52;CL:0000738,4.06e-21,136;CL:0002087,8.58e-18,115;CL:0002032,2.41e-17,161;CL:0000837,2.41e-17,161;CL:0000037,1.74e-16,168;CL:0000453,4.70e-16,5;CL:0000988,1.76e-15,177;CL:0002031,8.49e-15,120;CL:0000946,2.08e-09,1;CL:0000786,2.08e-09,1;CL:0000980,2.08e-09,1;CL:0000990,3.76e-09,8;CL:0000451,1.43e-07,10|ontology_enrichment_development_v019=CL:0000051;1.09e-28;53!UBERON:0001045;1.99e-09;1|ontology_enrichment_disease=DOID:0060058!1.35e-24!10;DOID:2531!2.49e-07!51;DOID:0060083!2.49e-07!51|ontology_enrichment_disease_v019=DOID:12603;1.01e-09;1!DOID:0060058;4.11e-08;10|ontology_enrichment_disease_v019_2=DOID:12603,7.50e-10,1;DOID:0060058,4.11e-08,10|ontology_enrichment_uberon=UBERON:0004177!4.33e-14!7;UBERON:0002106!3.53e-13!3;UBERON:0004854!3.53e-13!3;UBERON:0009034!3.53e-13!3;UBERON:0002095!3.53e-13!3;UBERON:0004782!3.53e-13!3;UBERON:0003281!3.53e-13!3;UBERON:0009664!3.53e-13!3;UBERON:0002296!3.53e-13!3;UBERON:0005602!3.53e-13!3;UBERON:0001179!3.53e-13!3;UBERON:0006293!3.53e-13!3;UBERON:0002193!3.61e-07!112|ontology_enrichment_uberon_v019=UBERON:0002106;3.47e-12;3!UBERON:0002372;1.99e-09;1!UBERON:0001154;1.99e-09;1!UBERON:0001153;1.99e-09;1!UBERON:0009854;1.99e-09;1!UBERON:0001961;1.99e-09;1!UBERON:0001744;1.99e-09;1!UBERON:0001042;1.99e-09;1!UBERON:0001735;1.99e-09;1!UBERON:0004177;1.17e-07;5!UBERON:0005057;1.17e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.77e-12,3;UBERON:0004854,3.77e-12,3;UBERON:0009034,3.77e-12,3;UBERON:0002095,3.77e-12,3;UBERON:0004782,3.77e-12,3;UBERON:0003281,3.77e-12,3;UBERON:0009664,3.77e-12,3;UBERON:0002296,3.77e-12,3;UBERON:0005602,3.77e-12,3;UBERON:0001179,3.77e-12,3;UBERON:0006293,3.77e-12,3;UBERON:0002372,1.76e-09,1;UBERON:0001961,1.76e-09,1;UBERON:0001744,1.76e-09,1;UBERON:0001735,1.76e-09,1;UBERON:0001154,2.67e-09,1;UBERON:0001153,2.67e-09,1;UBERON:0001045,2.67e-09,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06316195519468,2.13461532569859,1.49550484495991,0,0,0,0,0,0,2.55641761914995,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,2.73069305631066,3.55803701545422,1.28019066769952,2.00197993518006,4.02326707968138,1.98313461835459,0,2.84606484554724,4.11066032559657,2.29363936875137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702012795417713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.952927101831156,0,0,0.540031437238115,0,0,0,0,2.9728508020115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.659215496907038,0,0,1.10513566212459,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C651 | |||
|description=CAGE_peak_at_chr1:221220442..221220467,+ | |||
|id=chr1:221220442..221220467,+ | |||
|ontology_enrichment_celltype=CL:0000945!3.04e-72!24;CL:0000826!3.04e-72!24;CL:0000542!5.52e-43!53;CL:0000051!5.52e-43!53;CL:0000236!8.47e-42!14;CL:0000838!3.90e-40!52;CL:0000738!9.09e-28!140;CL:0002087!1.70e-25!119;CL:0002031!4.85e-24!124;CL:0002032!2.36e-22!165;CL:0000837!2.36e-22!165;CL:0000037!4.04e-21!172;CL:0000566!4.04e-21!172;CL:0000988!1.61e-19!182;CL:0000990!4.24e-16!8;CL:0000453!6.41e-14!5;CL:0000451!4.69e-13!10;CL:0000785!3.53e-09!2;CL:0000955!3.53e-09!2;CL:0000818!3.53e-09!2;CL:0000954!3.53e-09!2;CL:0000816!3.53e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.40e-85;24!CL:0000236;7.66e-63;13!CL:0000542;1.09e-28;53!CL:0000453;4.47e-16;5!CL:0000946;1.99e-09;1!CL:0000786;1.99e-09;1!CL:0000990;3.65e-09;8!CL:0000451;1.40e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.33e-85,24;CL:0000826,1.33e-85,24;CL:0000236,2.42e-70,14;CL:0000542,2.18e-42,53;CL:0000051,2.18e-42,53;CL:0000838,4.23e-38,52;CL:0000738,4.06e-21,136;CL:0002087,8.58e-18,115;CL:0002032,2.41e-17,161;CL:0000837,2.41e-17,161;CL:0000037,1.74e-16,168;CL:0000453,4.70e-16,5;CL:0000988,1.76e-15,177;CL:0002031,8.49e-15,120;CL:0000946,2.08e-09,1;CL:0000786,2.08e-09,1;CL:0000980,2.08e-09,1;CL:0000990,3.76e-09,8;CL:0000451,1.43e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000051;1.09e-28;53!UBERON:0001045;1.99e-09;1 | |||
|ontology_enrichment_disease=DOID:0060058!1.35e-24!10;DOID:2531!2.49e-07!51;DOID:0060083!2.49e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:12603;1.01e-09;1!DOID:0060058;4.11e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,7.50e-10,1;DOID:0060058,4.11e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!4.33e-14!7;UBERON:0002106!3.53e-13!3;UBERON:0004854!3.53e-13!3;UBERON:0009034!3.53e-13!3;UBERON:0002095!3.53e-13!3;UBERON:0004782!3.53e-13!3;UBERON:0003281!3.53e-13!3;UBERON:0009664!3.53e-13!3;UBERON:0002296!3.53e-13!3;UBERON:0005602!3.53e-13!3;UBERON:0001179!3.53e-13!3;UBERON:0006293!3.53e-13!3;UBERON:0002193!3.61e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.47e-12;3!UBERON:0002372;1.99e-09;1!UBERON:0001154;1.99e-09;1!UBERON:0001153;1.99e-09;1!UBERON:0009854;1.99e-09;1!UBERON:0001961;1.99e-09;1!UBERON:0001744;1.99e-09;1!UBERON:0001042;1.99e-09;1!UBERON:0001735;1.99e-09;1!UBERON:0004177;1.17e-07;5!UBERON:0005057;1.17e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.77e-12,3;UBERON:0004854,3.77e-12,3;UBERON:0009034,3.77e-12,3;UBERON:0002095,3.77e-12,3;UBERON:0004782,3.77e-12,3;UBERON:0003281,3.77e-12,3;UBERON:0009664,3.77e-12,3;UBERON:0002296,3.77e-12,3;UBERON:0005602,3.77e-12,3;UBERON:0001179,3.77e-12,3;UBERON:0006293,3.77e-12,3;UBERON:0002372,1.76e-09,1;UBERON:0001961,1.76e-09,1;UBERON:0001744,1.76e-09,1;UBERON:0001735,1.76e-09,1;UBERON:0001154,2.67e-09,1;UBERON:0001153,2.67e-09,1;UBERON:0001045,2.67e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06316195519468,2.13461532569859,1.49550484495991,0,0,0,0,0,0,2.55641761914995,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,2.73069305631066,3.55803701545422,1.28019066769952,2.00197993518006,4.02326707968138,1.98313461835459,0,2.84606484554724,4.11066032559657,2.29363936875137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702012795417713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.952927101831156,0,0,0.540031437238115,0,0,0,0,2.9728508020115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.659215496907038,0,0,1.10513566212459,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11776494143022,3.5873506884608,3.27130788511688,0,0,0,0.19998739585493,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12780701575824,0.257831551894309,4.59729317254673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0.129177819672012,0.0620747142958579,0,0,0.202117188958219,0,0,1.34704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0.320568492303233 | |||
|short_description=p@chr1:221220442..221220467,+ | |||
}} |
Revision as of 03:45, 12 September 2013
Short description: | p@chr1:221220442..221220467, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:221220442..221220467, + |
Coexpression cluster: | C651_splenic_CD19_B_xeroderma_plasma_Burkitt_lymphoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.33e-85 | 24 |
pro-B cell | 1.33e-85 | 24 |
B cell | 2.42e-70 | 14 |
lymphocyte | 2.18e-42 | 53 |
common lymphoid progenitor | 2.18e-42 | 53 |
lymphoid lineage restricted progenitor cell | 4.23e-38 | 52 |
leukocyte | 4.06e-21 | 136 |
nongranular leukocyte | 8.58e-18 | 115 |
hematopoietic oligopotent progenitor cell | 2.41e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.41e-17 | 161 |
hematopoietic stem cell | 1.74e-16 | 168 |
Langerhans cell | 4.70e-16 | 5 |
hematopoietic cell | 1.76e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 8.49e-15 | 120 |
antibody secreting cell | 2.08e-09 | 1 |
plasma cell | 2.08e-09 | 1 |
plasmablast | 2.08e-09 | 1 |
conventional dendritic cell | 3.76e-09 | 8 |
dendritic cell | 1.43e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.77e-12 | 3 |
gastrointestinal system mesentery | 3.77e-12 | 3 |
stomach region | 3.77e-12 | 3 |
mesentery | 3.77e-12 | 3 |
gastrointestinal system serosa | 3.77e-12 | 3 |
mesentery of stomach | 3.77e-12 | 3 |
gut mesentery | 3.77e-12 | 3 |
dorsal mesentery | 3.77e-12 | 3 |
dorsal mesogastrium | 3.77e-12 | 3 |
peritoneal cavity | 3.77e-12 | 3 |
spleen primordium | 3.77e-12 | 3 |
tonsil | 1.76e-09 | 1 |
mucosa-associated lymphoid tissue | 1.76e-09 | 1 |
lymphoid tissue | 1.76e-09 | 1 |
tonsillar ring | 1.76e-09 | 1 |
vermiform appendix | 2.67e-09 | 1 |
caecum | 2.67e-09 | 1 |
midgut | 2.67e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 7.50e-10 | 1 |
lymphoma | 4.11e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.