FFCP PHASE1:Hg19::chr1:94147419..94147428,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8412|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=973|TSSclassifier=S|UniProt=O75815|association_with_transcript=-34bp_to_ENST00000260502,NM_003567,uc001dqa.2_5end|description=CAGE_peak_3_at_BCAR3_5end|id=chr1:94147419..94147428,-|ontology_enrichment_celltype=CL:0000066!4.37e-21!254;CL:0000220!5.90e-20!246;CL:0002321!8.19e-20!248;CL:0000548!4.10e-19!679;CL:0000004!4.10e-19!679;CL:0000255!4.10e-19!679;CL:0000012!3.85e-18!682;CL:0000144!6.23e-13!625;CL:0000222!2.86e-12!119;CL:0002371!3.16e-11!591;CL:0000003!1.13e-10!722;CL:0000055!4.07e-09!180;CL:0000063!6.27e-09!578;CL:0000076!2.44e-07!62;CL:0002076!2.70e-07!43|ontology_enrichment_celltype_v019=CL:1000449;4.66e-08;15!CL:1000497;2.32e-07;17!CL:0002518;2.32e-07;17!CL:0002681;8.74e-07;12!CL:0002584;8.74e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,7.34e-20,253;CL:0002321,3.01e-17,250;CL:0000222,1.01e-09,121;CL:1000449,1.02e-07,15;CL:1000497,3.07e-07,17;CL:0002518,3.07e-07,17;CL:0002076,4.69e-07,42;CL:0002202,7.79e-07,9;CL:0002632,7.79e-07,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000467!3.71e-11!625;UBERON:0000480!6.50e-11!626;UBERON:0000468!3.10e-09!659;UBERON:0003914!5.62e-08!118;UBERON:0000926!3.64e-07!448;UBERON:0004120!3.64e-07!448;UBERON:0006603!3.64e-07!448;UBERON:0000923!3.96e-07!604;UBERON:0005291!3.96e-07!604;UBERON:0006598!3.96e-07!604;UBERON:0002532!3.96e-07!604;UBERON:0000486!5.72e-07!82;UBERON:0002050!6.11e-07!605;UBERON:0005423!6.11e-07!605;UBERON:0002049!7.49e-07!79;UBERON:0007798!7.49e-07!79|ontology_enrichment_uberon_v019=UBERON:0006555;4.66e-08;15!UBERON:0004819;4.66e-08;15!UBERON:0001285;4.66e-08;15!UBERON:0007684;4.66e-08;15!UBERON:0000353;3.55e-07;15!UBERON:0001225;8.74e-07;12!UBERON:0008987;8.74e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.02e-07,15;UBERON:0009773,1.02e-07,15;UBERON:0001231,1.02e-07,15;UBERON:0001285,1.02e-07,15;UBERON:0007684,1.02e-07,15;UBERON:0004208,1.02e-07,15;UBERON:0003914,1.75e-07,117;UBERON:0005631,3.80e-07,14;UBERON:0000158,3.80e-07,14;UBERON:0006555,6.42e-07,16;UBERON:0004819,6.42e-07,16;UBERON:0000353,7.27e-07,15|phase1_expression=0.181678379270557,0.856402095563933,0.422863212287913,0,0,0,2.53299878168311,1.89515962028049,1.04474251279935,2.7030733015166,6.28021051175185,3.9319446983431,6.59417445571134,0.495065411840187,0,0.672325146451775,3.61616716814386,1.46062018077475,1.95173119516203,1.35433163884467,1.22400414746552,1.25381888591235,0.85870796139317,0.821246550437305,1.75759695432724,0.229240217243854,0.410502947249729,0.472264687882075,3.14691421479123,0,0.309632246632152,2.75826367343678,4.2168828628955,1.84877005083394,0.542270404062111,0.284338464974843,0,2.76997704265939,0,0.434021741431704,0,0.971680998056939,0.257575567634187,0.290796477559129,0.377875943688809,0.970336244751265,0,1.6446715520873,0.619412741790207,0.575384784644301,0.768482119587302,1.18241114944293,2.06847408441971,0.645484683583826,1.35426486594342,0.376484679085209,2.18324920046277,0,0.918251677112708,3.20929027076094,1.27867425159808,0.989553900560148,2.59302754908121,1.27867425159808,1.7412554317715,2.26954089876456,1.86846674698672,1.00499466102697,1.0429658368404,0.65156653411535,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.650296737799391,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0.722878304769133,1.50401373190767,0.434539556882471,0.795285947051099,0.486634870302636,2.07976597760949,2.4390233720882,2.72287835648691,0.72038491523742,1.45718115317017,1.85392221392215,2.92092654289215,2.78607579678828,1.72845348674525,0.476981248610684,0,1.11437250398869,1.19257444420023,0.860234595106124,0.694281003215189,2.26123176769604,3.77549492588915,1.6507082516404,1.25396979922086,1.8089173141853,1.77883131343355,1.00416183829401,0.402829317109147,1.52054421143703,1.22031028774085,1.10298924103761,0.81014194788176,1.60739510911344,1.34717623575702,1.91439516821648,0,1.89853131913626,1.64881569537367,1.31780417436063,0,4.79703457356788,1.98788780678127,1.01304409331664,3.97227542439656,1.43418310374407,1.06400514659507,2.24271040056923,1.06748995729705,1.2333377420858,0.622422070799533,1.75123873690594,1.47115712802113,0.605429710579726,0.576175924479999,0.468642863667593,0.624320153660641,1.71141546463335,0.448346041655403,1.29177948508141,0.485618833104395,0.421352420106746,0.61246251376468,1.96534907698829,0.619954687054593,2.37600571456411,1.7308685049499,1.82032272387605,0.718618141816238,1.5150250255866,1.12606667884768,3.3247693858102,0.877955241761676,1.22595118319608,0.600952235626387,1.02088964844019,2.51145489964407,0.427114777637135,1.27159140695737,4.80145753735044,1.64884046781502,0.772921620136887,0.558350568994769,6.7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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8412 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=973 | |||
|TSSclassifier=S | |||
|UniProt=O75815 | |||
|association_with_transcript=-34bp_to_ENST00000260502,NM_003567,uc001dqa.2_5end | |||
|description=CAGE_peak_3_at_BCAR3_5end | |||
|id=chr1:94147419..94147428,- | |||
|ontology_enrichment_celltype=CL:0000066!4.37e-21!254;CL:0000220!5.90e-20!246;CL:0002321!8.19e-20!248;CL:0000548!4.10e-19!679;CL:0000004!4.10e-19!679;CL:0000255!4.10e-19!679;CL:0000012!3.85e-18!682;CL:0000144!6.23e-13!625;CL:0000222!2.86e-12!119;CL:0002371!3.16e-11!591;CL:0000003!1.13e-10!722;CL:0000055!4.07e-09!180;CL:0000063!6.27e-09!578;CL:0000076!2.44e-07!62;CL:0002076!2.70e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.66e-08;15!CL:1000497;2.32e-07;17!CL:0002518;2.32e-07;17!CL:0002681;8.74e-07;12!CL:0002584;8.74e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.34e-20,253;CL:0002321,3.01e-17,250;CL:0000222,1.01e-09,121;CL:1000449,1.02e-07,15;CL:1000497,3.07e-07,17;CL:0002518,3.07e-07,17;CL:0002076,4.69e-07,42;CL:0002202,7.79e-07,9;CL:0002632,7.79e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!3.71e-11!625;UBERON:0000480!6.50e-11!626;UBERON:0000468!3.10e-09!659;UBERON:0003914!5.62e-08!118;UBERON:0000926!3.64e-07!448;UBERON:0004120!3.64e-07!448;UBERON:0006603!3.64e-07!448;UBERON:0000923!3.96e-07!604;UBERON:0005291!3.96e-07!604;UBERON:0006598!3.96e-07!604;UBERON:0002532!3.96e-07!604;UBERON:0000486!5.72e-07!82;UBERON:0002050!6.11e-07!605;UBERON:0005423!6.11e-07!605;UBERON:0002049!7.49e-07!79;UBERON:0007798!7.49e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.66e-08;15!UBERON:0004819;4.66e-08;15!UBERON:0001285;4.66e-08;15!UBERON:0007684;4.66e-08;15!UBERON:0000353;3.55e-07;15!UBERON:0001225;8.74e-07;12!UBERON:0008987;8.74e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.02e-07,15;UBERON:0009773,1.02e-07,15;UBERON:0001231,1.02e-07,15;UBERON:0001285,1.02e-07,15;UBERON:0007684,1.02e-07,15;UBERON:0004208,1.02e-07,15;UBERON:0003914,1.75e-07,117;UBERON:0005631,3.80e-07,14;UBERON:0000158,3.80e-07,14;UBERON:0006555,6.42e-07,16;UBERON:0004819,6.42e-07,16;UBERON:0000353,7.27e-07,15 | |||
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| |||
|short_description=p3@BCAR3 | |||
}} |
Revision as of 07:16, 12 September 2013
Short description: | p3@BCAR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_BCAR3_5end |
Coexpression cluster: | NA |
Association with transcript: | -34bp_to_ENST00000260502, NM_003567, uc001dqa.2_5end |
EntrezGene: | BCAR3 |
HGNC: | 973 |
UniProt: | O75815 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.34e-20 | 253 |
embryonic cell | 3.01e-17 | 250 |
mesodermal cell | 1.01e-09 | 121 |
epithelial cell of nephron | 1.02e-07 | 15 |
kidney cell | 3.07e-07 | 17 |
kidney epithelial cell | 3.07e-07 | 17 |
endo-epithelial cell | 4.69e-07 | 42 |
epithelial cell of tracheobronchial tree | 7.79e-07 | 9 |
epithelial cell of lower respiratory tract | 7.79e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.02e-07 | 15 |
renal tubule | 1.02e-07 | 15 |
nephron tubule | 1.02e-07 | 15 |
nephron | 1.02e-07 | 15 |
uriniferous tubule | 1.02e-07 | 15 |
nephrogenic mesenchyme | 1.02e-07 | 15 |
epithelial tube | 1.75e-07 | 117 |
extraembryonic membrane | 3.80e-07 | 14 |
membranous layer | 3.80e-07 | 14 |
excretory tube | 6.42e-07 | 16 |
kidney epithelium | 6.42e-07 | 16 |
parenchyma | 7.27e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.