FFCP PHASE1:Hg19::chr4:140223670..140223682,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4717|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7705|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000394225_5end|description=CAGE_peak_5_at_NDUFC1_5end|id=chr4:140223670..140223682,-|ontology_enrichment_celltype=CL:0000222!6.12e-07!119;CL:0000003!7.61e-07!722|ontology_enrichment_celltype_v019=CL:1000497;1.66e-11;17!CL:0002518;1.66e-11;17!CL:1000449;1.63e-09;15!CL:0002681;1.78e-08;12!CL:0002584;1.78e-08;12!CL:1000746;8.03e-08;7!CL:1000612;8.03e-08;7|ontology_enrichment_celltype_v019_2=CL:1000497,2.61e-11,17;CL:0002518,2.61e-11,17;CL:1000449,1.67e-09,15;CL:0002681,2.63e-08,12;CL:0002584,2.63e-08,12;CL:1000746,1.15e-07,7;CL:1000612,1.15e-07,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0006555;1.63e-09;15!UBERON:0004819;1.63e-09;15!UBERON:0001285;1.63e-09;15!UBERON:0007684;1.63e-09;15!UBERON:0001225;1.78e-08;12!UBERON:0008987;1.78e-08;12!UBERON:0001851;5.94e-08;15!UBERON:0000074;8.03e-08;7!UBERON:0001229;8.03e-08;7!UBERON:0002113;5.25e-07;24!UBERON:0011143;5.25e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.67e-09,15;UBERON:0009773,1.67e-09,15;UBERON:0001231,1.67e-09,15;UBERON:0001285,1.67e-09,15;UBERON:0007684,1.67e-09,15;UBERON:0004208,1.67e-09,15;UBERON:0006555,1.05e-08,16;UBERON:0004819,1.05e-08,16;UBERON:0001225,2.63e-08,12;UBERON:0008987,2.63e-08,12;UBERON:0001851,8.66e-08,15;UBERON:0010532,1.15e-07,7;UBERON:0000074,1.15e-07,7;UBERON:0001229,1.15e-07,7;UBERON:0001230,1.15e-07,7;UBERON:0003220,1.15e-07,7;UBERON:0005749,1.15e-07,7;UBERON:0004199,1.15e-07,7;UBERON:0004209,1.15e-07,7;UBERON:0004198,1.15e-07,7|phase1_expression=1.45342703416445,0.856402095563933,1.40954404095971,1.0007329835313,0.446961094427288,0,0,0.631719873426831,0,0.491467873003018,1.39560233594486,0.436882744260345,0.263766978228454,0.866364470720326,1.65698687863958,1.34465029290355,0.602694528023977,1.46062018077475,1.95173119516203,0.861847406537515,0.612002073732759,0.626909442956176,0.85870796139317,1.50561867580173,0.627713197974014,0.229240217243854,0.410502947249729,0.550975469195755,0.393364276848904,0.767658796194425,0,0.919421224478927,0.30120591877825,0,0,0.284338464974843,0,0.553995408531877,0,0,0.671746422719773,0.32389366601898,0.77272670290256,0,0,0.242584061187816,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633765858935825,0.637812899895131,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.39783335439818,0.182664153764634,0,2.18455444504853,0.889509253863555,1.28019066769952,0.400395987036012,0,1.32208974556972,0.954053754535364,0.569212969109448,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0.822405995998037,1.17030546773475,0.32592226663359,1.4203434172042,0,2.67385096524417,1.17842362989935,1.55073726208535,1.35401931882508,1.66518715643378,2.34106825607781,0.986627427622057,0.276350017785848,0.579606171470105,0.296573126324121,0.535081656179426,0,1.92625882585863,0.766440987203842,1.03088233644789,1.01207876807801,0.637130828648193,0.651083453856419,1.90090408889675,0.451725357233318,0.639933055772092,2.49861453104692,1.89421801635213,0,0.403213486449465,0,0,2.43806866313962,0,1.02290049474824,1.0843174571537,0,1.30361867064741,0,0,0.945348171640679,1.10864698731282,0.351339142772504,0.261958150995425,1.82147644146271,0.741568885568859,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0.371457501329565,0.79504962946682,0,0.694281003215189,0,0.838998872419812,0.550236083880135,0.626984899610432,1.55050055501597,0.71153252537342,0.66944122552934,0.805658634218294,0.760272105718513,3.1728067481262,0.735326160691737,0,0.803697554556718,0.22452937262617,0.337834441449967,0,0,0.916008719652036,0,0,1.3082821564276,0.993943903390637,1.2663051166458,0.794455084879313,0.573673241497627,0.709336764396714,0,0,0.74000264525148,0.311211035399766,0.404132016209064,0.326923806226917,1.36221684880438,0,2.10889288650417,0.624320153660641,1.1409436430889,1.04614076386261,0.117434498643765,0,0.280901613404497,0.204154171254893,0.737005903870608,0.413303124703062,1.18800285728205,0.247266929278557,0.910161361938026,0.718618141816238,0.841680569770331,0.250237039743928,0.277064115484183,1.31693286264251,0.612975591598039,0.901428353439581,1.13432183160021,0.538168907066586,0.85422955527427,1.27159140695737,0.600182192168805,0.515262646192195,0,0.744467425326359,0.168776332241266,0.487185025805993,0.252433774244115,0.920498986422993,0.484938170456436,1.06502877754984,0.705264687593482,1.01736355386293,1.15956511897978,0.272746120590835,0.286804595389004,0.609868530647977,0.795178609928912,0.464775771478074,0.518305275076852,1.00928340350251,0,0,0.643240938192885,0,0,0.721879481669586,0.236613600079688,0.168584690078102,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0.3924429302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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4717 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7705 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000394225_5end | |||
|description=CAGE_peak_5_at_NDUFC1_5end | |||
|id=chr4:140223670..140223682,- | |||
|ontology_enrichment_celltype=CL:0000222!6.12e-07!119;CL:0000003!7.61e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.66e-11;17!CL:0002518;1.66e-11;17!CL:1000449;1.63e-09;15!CL:0002681;1.78e-08;12!CL:0002584;1.78e-08;12!CL:1000746;8.03e-08;7!CL:1000612;8.03e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.61e-11,17;CL:0002518,2.61e-11,17;CL:1000449,1.67e-09,15;CL:0002681,2.63e-08,12;CL:0002584,2.63e-08,12;CL:1000746,1.15e-07,7;CL:1000612,1.15e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.63e-09;15!UBERON:0004819;1.63e-09;15!UBERON:0001285;1.63e-09;15!UBERON:0007684;1.63e-09;15!UBERON:0001225;1.78e-08;12!UBERON:0008987;1.78e-08;12!UBERON:0001851;5.94e-08;15!UBERON:0000074;8.03e-08;7!UBERON:0001229;8.03e-08;7!UBERON:0002113;5.25e-07;24!UBERON:0011143;5.25e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.67e-09,15;UBERON:0009773,1.67e-09,15;UBERON:0001231,1.67e-09,15;UBERON:0001285,1.67e-09,15;UBERON:0007684,1.67e-09,15;UBERON:0004208,1.67e-09,15;UBERON:0006555,1.05e-08,16;UBERON:0004819,1.05e-08,16;UBERON:0001225,2.63e-08,12;UBERON:0008987,2.63e-08,12;UBERON:0001851,8.66e-08,15;UBERON:0010532,1.15e-07,7;UBERON:0000074,1.15e-07,7;UBERON:0001229,1.15e-07,7;UBERON:0001230,1.15e-07,7;UBERON:0003220,1.15e-07,7;UBERON:0005749,1.15e-07,7;UBERON:0004199,1.15e-07,7;UBERON:0004209,1.15e-07,7;UBERON:0004198,1.15e-07,7 | |||
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| |||
|short_description=p5@NDUFC1 | |||
}} |
Revision as of 02:30, 13 September 2013
Short description: | p5@NDUFC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_NDUFC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000394225_5end |
EntrezGene: | NDUFC1 |
HGNC: | 7705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.61e-11 | 17 |
kidney epithelial cell | 2.61e-11 | 17 |
epithelial cell of nephron | 1.67e-09 | 15 |
kidney cortical cell | 2.63e-08 | 12 |
renal cortical epithelial cell | 2.63e-08 | 12 |
glomerular cell | 1.15e-07 | 7 |
kidney corpuscule cell | 1.15e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.67e-09 | 15 |
renal tubule | 1.67e-09 | 15 |
nephron tubule | 1.67e-09 | 15 |
nephron | 1.67e-09 | 15 |
uriniferous tubule | 1.67e-09 | 15 |
nephrogenic mesenchyme | 1.67e-09 | 15 |
excretory tube | 1.05e-08 | 16 |
kidney epithelium | 1.05e-08 | 16 |
cortex of kidney | 2.63e-08 | 12 |
renal parenchyma | 2.63e-08 | 12 |
cortex | 8.66e-08 | 15 |
primitive nephron | 1.15e-07 | 7 |
renal glomerulus | 1.15e-07 | 7 |
renal corpuscle | 1.15e-07 | 7 |
glomerular capsule | 1.15e-07 | 7 |
metanephric mesenchyme | 1.15e-07 | 7 |
glomerular tuft | 1.15e-07 | 7 |
S-shaped body | 1.15e-07 | 7 |
renal vesicle | 1.15e-07 | 7 |
comma-shaped body | 1.15e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.