FFCP PHASE1:Hg19::chr4:85046693..85046696,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C85|description=CAGE_peak_at_chr4:85046693..85046696,-|id=chr4:85046693..85046696,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002253;3.69e-07;2|ontology_enrichment_celltype_v019_2=CL:0002253,2.43e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!2.35e-22!106;DOID:0050687!4.50e-18!143;DOID:1749!1.33e-14!14;DOID:162!2.32e-14!235;DOID:14566!8.88e-14!239;DOID:0050615!3.73e-08!16;DOID:0050686!4.98e-07!137|ontology_enrichment_disease_v019=DOID:0050619;4.76e-13;1!DOID:1357;4.76e-13;1!DOID:3908;2.58e-10;5!DOID:3910;3.69e-07;2!DOID:4468;3.69e-07;2!DOID:0050615;3.80e-07;16|ontology_enrichment_disease_v019_2=DOID:0050619,4.23e-13,1;DOID:1357,4.23e-13,1;DOID:3908,4.32e-10,5;DOID:305,8.42e-08,106;DOID:4468,3.28e-07,2;DOID:0050615,4.71e-07,16;DOID:3910,5.28e-07,2;DOID:0050687,7.14e-07,143|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000029;4.76e-13;1!UBERON:0001764;4.76e-13;1!UBERON:0001825;4.76e-13;1!UBERON:0004903;3.69e-07;2!UBERON:0002173;3.69e-07;2!UBERON:0002186;3.69e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000029,3.33e-13,1;UBERON:0001764,4.23e-13,1;UBERON:0001825,4.23e-13,1;UBERON:0004903,5.28e-07,2;UBERON:0002173,5.28e-07,2;UBERON:0002186,5.28e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0.563391205064483,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.822724546172388,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556543525114529,0,1.68900326502395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,1.365521379426,1.01701460117107,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0.451191321234361,0,0.167821586975843,0.569261198172555,0,0,1.46909527343233,1.83758992864123,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0.242780379534093,0,3.62972148145992,0,0,1.50323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0,0,0,0,0,0,0,0,0.586654148204409,0.320635281006135,0,0.39961921916426,0,0,0,0,0,0,0.815425236441684,0.418411385249333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07572403599707,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0.513260513652988,0,0,0,0,1.48849806543585,0.790446527591777,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0,0,0,0,0,0,0.249960815924213,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3594440755958,0,0,0.327628914576042,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.981477185010256,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0,0,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,1.39265542612958,0.237840181555137,0.22589216407792,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,1.39917618294901,0.178553938605658,0.352894871715692,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.504665699340316,0,1.14028650910293,0.101988829741982,0,0.18378979906969,1.0028301571695,0,0.803892390468535,0,0,0,0.23806443146374,0,0,0,0,0.404234377916439,0,0,0,0.0717222053926763,0,0.651226148887796,0,0,0,0,0,0,0,0,0|short_description=p@chr4:85046693..85046696,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_at_chr4:85046693..85046696,- | |||
|id=chr4:85046693..85046696,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002253;3.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,2.43e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.35e-22!106;DOID:0050687!4.50e-18!143;DOID:1749!1.33e-14!14;DOID:162!2.32e-14!235;DOID:14566!8.88e-14!239;DOID:0050615!3.73e-08!16;DOID:0050686!4.98e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:0050619;4.76e-13;1!DOID:1357;4.76e-13;1!DOID:3908;2.58e-10;5!DOID:3910;3.69e-07;2!DOID:4468;3.69e-07;2!DOID:0050615;3.80e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,4.23e-13,1;DOID:1357,4.23e-13,1;DOID:3908,4.32e-10,5;DOID:305,8.42e-08,106;DOID:4468,3.28e-07,2;DOID:0050615,4.71e-07,16;DOID:3910,5.28e-07,2;DOID:0050687,7.14e-07,143 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000029;4.76e-13;1!UBERON:0001764;4.76e-13;1!UBERON:0001825;4.76e-13;1!UBERON:0004903;3.69e-07;2!UBERON:0002173;3.69e-07;2!UBERON:0002186;3.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,3.33e-13,1;UBERON:0001764,4.23e-13,1;UBERON:0001825,4.23e-13,1;UBERON:0004903,5.28e-07,2;UBERON:0002173,5.28e-07,2;UBERON:0002186,5.28e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0.563391205064483,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.822724546172388,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556543525114529,0,1.68900326502395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,1.365521379426,1.01701460117107,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0.451191321234361,0,0.167821586975843,0.569261198172555,0,0,1.46909527343233,1.83758992864123,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0.242780379534093,0,3.62972148145992,0,0,1.50323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0,0,0,0,0,0,0,0,0.586654148204409,0.320635281006135,0,0.39961921916426,0,0,0,0,0,0,0.815425236441684,0.418411385249333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07572403599707,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0.513260513652988,0,0,0,0,1.48849806543585,0.790446527591777,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0,0,0,0,0,0,0.249960815924213,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3594440755958,0,0,0.327628914576042,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.981477185010256,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0,0,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,1.39265542612958,0.237840181555137,0.22589216407792,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,1.39917618294901,0.178553938605658,0.352894871715692,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.504665699340316,0,1.14028650910293,0.101988829741982,0,0.18378979906969,1.0028301571695,0,0.803892390468535,0,0,0,0.23806443146374,0,0,0,0,0.404234377916439,0,0,0,0.0717222053926763,0,0.651226148887796,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:85046693..85046696,- | |||
}} |
Revision as of 12:06, 13 September 2013
Short description: | p@chr4:85046693..85046696, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:85046693..85046696, - |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 2.43e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
lymph node | 3.33e-13 | 1 |
maxillary sinus | 4.23e-13 | 1 |
paranasal sinus | 4.23e-13 | 1 |
bronchoalveolar duct junction | 5.28e-07 | 2 |
alveolar duct | 5.28e-07 | 2 |
bronchiole | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 4.23e-13 | 1 |
maxillary sinus cancer | 4.23e-13 | 1 |
non-small cell lung carcinoma | 4.32e-10 | 5 |
carcinoma | 8.42e-08 | 106 |
clear cell adenocarcinoma | 3.28e-07 | 2 |
respiratory system cancer | 4.71e-07 | 16 |
lung adenocarcinoma | 5.28e-07 | 2 |
cell type cancer | 7.14e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.