FFCP PHASE1:Hg19::chr5:125758908..125758933,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=65983|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24911|TSSclassifier=S|UniProt=B7Z3R1,B7Z1F2,Q96HH9|association_with_transcript=39bp_to_ENST00000542322,ENST00000544396,NM_001146320,NM_001146321,NM_023927,uc003ktu.2,uc011cwv.1,uc011cww.1,uc011cwx.1_5end|description=CAGE_peak_9_at_GRAMD3_5end|id=chr5:125758908..125758933,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000624;1.93e-12;6!CL:0000197;2.05e-09;6!CL:0000098;2.05e-09;6!CL:0002167;2.05e-09;6!CL:0002334;1.64e-08;12!CL:0000791;3.39e-08;18!CL:0000789;3.39e-08;18!CL:0002419;3.39e-08;18!CL:0002580;5.85e-08;3!CL:0002579;6.97e-08;3!CL:0000136;1.19e-07;13!CL:0002615;1.44e-07;3!CL:0000623;1.44e-07;3!CL:0000898;9.91e-07;3|ontology_enrichment_celltype_v019_2=CL:0000624,1.24e-12,6;CL:0000197,2.30e-09,6;CL:0000098,2.30e-09,6;CL:0002167,2.30e-09,6;CL:0002334,1.57e-08,12;CL:0000791,2.88e-08,18;CL:0000789,2.88e-08,18;CL:0002420,2.88e-08,18;CL:0002419,2.88e-08,18;CL:0000790,2.88e-08,18;CL:0000738,3.15e-08,136;CL:0002580,5.77e-08,3;CL:0002579,7.20e-08,3;CL:0000134,8.19e-08,354;CL:0000623,1.35e-07,3;CL:0000825,1.35e-07,3;CL:0002615,1.54e-07,3;CL:0002320,2.25e-07,361;CL:0002087,2.28e-07,115;CL:0000898,6.88e-07,3|ontology_enrichment_development_v019=CL:0000790;3.39e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0003688;8.83e-14;6!UBERON:0002358;8.83e-14;6!UBERON:0003684;8.83e-14;6!UBERON:0001178;8.83e-14;6!UBERON:0004457;7.60e-09;9!UBERON:0000042;7.60e-09;9|ontology_enrichment_uberon_v019_2=UBERON:0003688,9.69e-14,6;UBERON:0002358,9.69e-14,6;UBERON:0003684,9.69e-14,6;UBERON:0001178,9.69e-14,6;UBERON:0002384,2.82e-07,371|phase1_expression=14.5342703416445,10.7050261945492,14.9411668341729,7.00513088471913,2.23480547213644,3.48935409640147,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0.157421562627358,1.18009283054671,1.53531759238885,1.23852898652861,0,0.30120591877825,0,0,0,0,6.09394949385065,3.81034450193269,3.25516306073778,0.223915474239924,0,0,0,0,0,0.232429036905685,0.411167888021826,0,1.1507695692886,0.256160706529101,0,2.75796544589295,2.5819387343353,1.35426486594342,0.376484679085209,0,0.224723484445085,2.14258724659632,2.56743221660875,0.639337125799041,0.329851300186716,0,0,3.77272010217159,2.8369261234557,0.622822248995575,0.251248665256743,0.521482918420201,0,1.81619850790011,7.36555271975129,1.58231193720442,0,0,0.209658645508376,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,1.76171156811282,0,0,1.12101712596307,0,5.90129310341499,3.53709686474248,3.49522548299166,0.668745981562712,1.62961133316795,0.473447805734733,0,1.55974639639243,2.65145316727353,1.32920336750173,1.62482318259009,0.896639238079726,1.95089021339817,0,0.276350017785848,0.289803085735052,0.741432815810302,1.07016331235885,1.04535523804977,0,3.06576394881537,1.37450978193052,1.01207876807801,0,0,0,0.150575119077773,0,0,0,0,10.0803371612366,5.08136371988664,5.21367853978076,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0.196468613246569,0,0.370784442784429,0,0,0,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0.402829317109147,0,1.22031028774085,0.367663080345869,0,0,0,0.112611480483322,0,0,0,3.9534125230819,0,0,4.47274756525787,0.633152558322899,1.45650098894541,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0.368502951935304,0,2.37600571456411,0.247266929278557,0,0,0,0.125118519871964,0,0.438977620880838,0.30648779579902,0.600952235626387,0,3.04962380671065,0.427114777637135,0.635795703478686,0.600182192168805,0.412210116953756,0.772921620136887,0.37223371266318,3.03797398034279,1.75386609290158,0.252433774244115,0.460249493211497,0.323292113637624,0,0,0.847802961552438,0.773043412653187,0,0,0,0,0.116193942869518,0,0,0,1.56449532329816,1.28648187638577,1.38134921352481,0.928735856063958,0,0.709840800239063,0.337169380156203,0.482022059766964,0.661763836394364,0.435758888184812,0.71181185733329,0.808987848960987,0.588664395376038,0.769494313892781,0.738155454624648,0,0.4115740113314,0,0,0,1.18157981336281,0,0,0,0.329250856225877,1.1240175325762,0.100528972411631,0,0,0,0,0,0,2.16549671641611,0.462985512576611,1.52203321787679,0,0,0,0,0,0,0.16798212819886,0,0.626909658919938,0,0.383382679165211,0.492663237895943,0,0.621984346622316,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,0,1.25342674267927,0,7.88123040807709,4.9594342217689,4.49200626979119,0.254094624222463,0,0,0,0,0,0,0,0,0,0,5.61521326133179,8.92144943985809,13.0893004478166,21.2025961136811,0.601892199455438,0,0,0,0,0.173767228936166,0,0,1.6541442089831,3.01999881146064,0.960548020230999,0,0,0,13.8940372378515,20.717366393888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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=65983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |||
|TSSclassifier=S | |||
|UniProt=B7Z3R1,B7Z1F2,Q96HH9 | |||
|association_with_transcript=39bp_to_ENST00000542322,ENST00000544396,NM_001146320,NM_001146321,NM_023927,uc003ktu.2,uc011cwv.1,uc011cww.1,uc011cwx.1_5end | |||
|description=CAGE_peak_9_at_GRAMD3_5end | |||
|id=chr5:125758908..125758933,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.93e-12;6!CL:0000197;2.05e-09;6!CL:0000098;2.05e-09;6!CL:0002167;2.05e-09;6!CL:0002334;1.64e-08;12!CL:0000791;3.39e-08;18!CL:0000789;3.39e-08;18!CL:0002419;3.39e-08;18!CL:0002580;5.85e-08;3!CL:0002579;6.97e-08;3!CL:0000136;1.19e-07;13!CL:0002615;1.44e-07;3!CL:0000623;1.44e-07;3!CL:0000898;9.91e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.24e-12,6;CL:0000197,2.30e-09,6;CL:0000098,2.30e-09,6;CL:0002167,2.30e-09,6;CL:0002334,1.57e-08,12;CL:0000791,2.88e-08,18;CL:0000789,2.88e-08,18;CL:0002420,2.88e-08,18;CL:0002419,2.88e-08,18;CL:0000790,2.88e-08,18;CL:0000738,3.15e-08,136;CL:0002580,5.77e-08,3;CL:0002579,7.20e-08,3;CL:0000134,8.19e-08,354;CL:0000623,1.35e-07,3;CL:0000825,1.35e-07,3;CL:0002615,1.54e-07,3;CL:0002320,2.25e-07,361;CL:0002087,2.28e-07,115;CL:0000898,6.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.39e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.83e-14;6!UBERON:0002358;8.83e-14;6!UBERON:0003684;8.83e-14;6!UBERON:0001178;8.83e-14;6!UBERON:0004457;7.60e-09;9!UBERON:0000042;7.60e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,9.69e-14,6;UBERON:0002358,9.69e-14,6;UBERON:0003684,9.69e-14,6;UBERON:0001178,9.69e-14,6;UBERON:0002384,2.82e-07,371 | |||
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| |||
|short_description=p9@GRAMD3 | |||
}} |
Revision as of 12:56, 13 September 2013
Short description: | p9@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_GRAMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_ENST00000542322, ENST00000544396, NM_001146320, NM_001146321, NM_023927, uc003ktu.2, uc011cwv.1, uc011cww.1, uc011cwx.1_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | B7Z3R1B7Z1F2Q96HH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.24e-12 | 6 |
receptor cell | 2.30e-09 | 6 |
sensory epithelial cell | 2.30e-09 | 6 |
olfactory epithelial cell | 2.30e-09 | 6 |
preadipocyte | 1.57e-08 | 12 |
mature alpha-beta T cell | 2.88e-08 | 18 |
alpha-beta T cell | 2.88e-08 | 18 |
immature T cell | 2.88e-08 | 18 |
mature T cell | 2.88e-08 | 18 |
immature alpha-beta T cell | 2.88e-08 | 18 |
leukocyte | 3.15e-08 | 136 |
preadipocyte of the breast | 5.77e-08 | 3 |
omentum preadipocyte | 7.20e-08 | 3 |
mesenchymal cell | 8.19e-08 | 354 |
natural killer cell | 1.35e-07 | 3 |
pro-NK cell | 1.35e-07 | 3 |
adipocyte of omentum tissue | 1.54e-07 | 3 |
connective tissue cell | 2.25e-07 | 361 |
nongranular leukocyte | 2.28e-07 | 115 |
naive T cell | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 9.69e-14 | 6 |
peritoneum | 9.69e-14 | 6 |
abdominal cavity | 9.69e-14 | 6 |
visceral peritoneum | 9.69e-14 | 6 |
connective tissue | 2.82e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.