CL:0002419

Name:	mature T cell
Namespace:	FANTOM
Definition:	"A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
Synonyms:	"CD3e-positive T cell" EXACT [] "CD3epsilon T cell" RELATED [] "mature T-cell" EXACT []
Created by:	tmeehan
Creation date:	2010-10-12T01:56:15Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0000084(T cell)

Children

is a:	CL:0000791 (mature alpha-beta T cell),CL:0000813 (memory T cell),CL:0000815 (regulatory T cell),CL:0000898 (naive T cell),CL:0000911 (effector T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10768-110F3
• 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
• 11225-116C1 (CD4+ T Cells, donor1)
• 11226-116C2 (CD8+ T Cells, donor1)
• 11306-117C1 (CD4+ T Cells, donor2)
• 11307-117C2 (CD8+ T Cells, donor2)
• 11382-118B5 (CD4+ T Cells, donor3)
• 11383-118B6 (CD8+ T Cells, donor3)
• 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
• 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)

... further results Mouse (Mus musculus)

• 10768-110F3
• 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
• 11225-116C1 (CD4+ T Cells, donor1)
• 11226-116C2 (CD8+ T Cells, donor1)
• 11306-117C1 (CD4+ T Cells, donor2)
• 11307-117C2 (CD8+ T Cells, donor2)
• 11382-118B5 (CD4+ T Cells, donor3)
• 11383-118B6 (CD8+ T Cells, donor3)
• 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
• 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002419 (mature T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
4.82e-125	FFCP PHASE1:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
4.82e-125	FFCP PHASE2:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
2.55e-96	FFCP PHASE2:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
2.55e-96	FFCP PHASE1:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
1.42e-94	FFCP PHASE1:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.42e-94	FFCP PHASE2:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.09e-92	FFCP PHASE1:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
1.09e-92	FFCP PHASE2:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
4.33e-92	FFCP PHASE2:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
4.33e-92	FFCP PHASE1:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
1.97e-90	FFCP PHASE1:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
1.97e-90	FFCP PHASE2:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
2.93e-90	FFCP PHASE2:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
2.93e-90	FFCP PHASE1:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
5.78e-88	FFCP PHASE1:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
5.78e-88	FFCP PHASE2:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
8.73e-88	FFCP PHASE1:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
8.73e-88	FFCP PHASE2:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
4.59e-87	FFCP PHASE2:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
4.59e-87	FFCP PHASE1:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
1.31e-86	FFCP PHASE1:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
1.31e-86	FFCP PHASE1:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE2:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE1:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE1:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE1:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE2:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE2:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
2.98e-86	FFCP PHASE2:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
2.98e-86	FFCP PHASE1:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
3.57e-86	FFCP PHASE2:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
3.57e-86	FFCP PHASE1:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
9.89e-85	FFCP PHASE1:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
9.89e-85	FFCP PHASE2:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
1.01e-83	FFCP PHASE1:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.01e-83	FFCP PHASE2:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.1e-83	FFCP PHASE2:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.1e-83	FFCP PHASE2:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.69e-83	FFCP PHASE1:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.69e-83	FFCP PHASE2:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.02e-82	FFCP PHASE1:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.02e-82	FFCP PHASE2:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.33e-82	FFCP PHASE2:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
1.33e-82	FFCP PHASE1:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
3.02e-82	FFCP PHASE2:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
3.02e-82	FFCP PHASE1:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
4.05e-82	FFCP PHASE2:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.05e-82	FFCP PHASE1:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.31e-82	FFCP PHASE2:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
4.31e-82	FFCP PHASE1:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
5.81e-82	FFCP PHASE2:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
5.81e-82	FFCP PHASE1:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
1.02e-81	FFCP PHASE2:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
1.02e-81	FFCP PHASE1:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
8.22e-81	FFCP PHASE2:Hg19::chr11:108094238..108094253,+	p10@ATM
8.22e-81	FFCP PHASE1:Hg19::chr11:108094238..108094253,+	p10@ATM
2.22e-80	FFCP PHASE2:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
2.22e-80	FFCP PHASE1:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
8.6e-79	FFCP PHASE1:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
8.6e-79	FFCP PHASE2:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
2.3e-78	FFCP PHASE1:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE2:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE1:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE1:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.3e-78	FFCP PHASE1:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE2:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.56e-78	FFCP PHASE1:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.56e-78	FFCP PHASE2:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.82e-78	FFCP PHASE1:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
2.82e-78	FFCP PHASE1:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE1:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE2:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
3.46e-78	FFCP PHASE1:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
3.46e-78	FFCP PHASE2:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
4.25e-78	FFCP PHASE2:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE1:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
4.25e-78	FFCP PHASE1:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE2:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
5.22e-78	FFCP PHASE2:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
5.22e-78	FFCP PHASE1:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
6.45e-78	FFCP PHASE1:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
6.45e-78	FFCP PHASE2:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
7.86e-78	FFCP PHASE1:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1
7.86e-78	FFCP PHASE2:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1

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