FFCP PHASE1:Hg19::chr5:126113110..126113127,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4001|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6637|TSSclassifier=S|UniProt=E9PBF6|association_with_transcript=229bp_to_ENST00000395354_5end|description=CAGE_peak_9_at_LMNB1_5end|id=chr5:126113110..126113127,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;1.35e-22;6!CL:0000404;1.35e-22;6!CL:0000039;2.07e-19;7!CL:0000586;2.07e-19;7!CL:0002322;1.73e-15;5|ontology_enrichment_celltype_v019_2=CL:0000540,7.97e-23,6;CL:0000031,7.97e-23,6;CL:0000404,7.97e-23,6;CL:0000039,2.35e-19,7;CL:0000586,2.35e-19,7;CL:0000047,3.47e-17,8;CL:0002322,1.82e-15,5|ontology_enrichment_development_v019=CL:0000031;1.35e-22;6!UBERON:0009117;5.24e-08;10!UBERON:0005564;5.24e-08;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;2.22e-09;22!DOID:2994;2.22e-09;22|ontology_enrichment_disease_v019_2=DOID:3095,2.20e-09,22;DOID:2994,2.20e-09,22|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000473;6.91e-10;8!UBERON:0003135;2.54e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.60e-10,8;UBERON:0003135,2.72e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0.627713197974014,0.458480434487708,0.410502947249729,0.314843125254717,0,0,0.154816123316076,0,0,0,0.154934401160603,0,0.293600439334847,0,0,0,0.671746422719773,0,0,0.145398238779565,0.377875943688809,0,0,0,0,0.28769239232215,0.256160706529101,0,0.344745680736619,0,0,0,0.545812300115692,0,0,0,0,0.989553900560148,0.598390972864896,2.13112375266347,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0.222820913770347,0,0,0,0.128091319725675,0.390178042679635,0.328875809207352,0,0,0,0,1.04535523804977,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0.289693037921647,0,0,0.0945348171640679,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,0,0,0.367663080345869,0,0.446498641420399,0.22452937262617,0.337834441449967,0,1.89853131913626,0,0,0,0,0,0.12663051166458,0,0.286836620748814,1.41867352879343,0,0,0.49333509683432,0.311211035399766,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0.352303495931295,0,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0,0,0,0.505008341862199,0,0,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0.337552664482532,0.194874010322397,0.252433774244115,0,0.161646056818812,0,0.10075209822764,0,0,0,0,1.09776335516636,0.530119073285941,1.2781333715647,0.725627385107593,1.7662459561294,2.55484151353081,1.56449532329816,0,0,0,0,0.118306800039844,0,0.482022059766964,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0.352193736052904,0.207328115540772,0.432359860250884,0,0.063497894292169,0,0,0,0.514137463516618,0.300343057843917,0,0,0.43596006883328,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0.112085143993527,0.197030760201927,0,0.128343036279748,0,0,1.54657762555539,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.521301686808497,0.195801157462741,0,0,0,0.320182673410333,0.303127571446259,0,0.604780586659361,0,0,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0.519254429183621,0.232420756919918,1.93375119346596,0.200506470303285,0,0.229628896329213,0.546273504020151,0,0,0.15403067420883,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0.261435451024901,0.256450125116389,0.656029291399411,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0.154048617114644,0,0.413509717453592,0.107420244868274,0,0.511359764496605,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0.539617372749944,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0.282810863907425,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0.743212700502875,0.144269212976445,0.355709216742071,0.159426272728822,0,0.383010740264733,0.211673582723883,0,0,0.228234679033192,0.156679895773023,0,0.169291777801603,0.1605880751037,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.242721043499027,0.445773537109913,0,0,0,0,0,0,0,0.494411622680279,0,0,0.552567831062295,0,0,0.492339221844278,0,0.269605053441981,0.179021174675609,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0.694499979733169,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0.0769502585037971,0,0.23056390438806,4.66739750930815,0.108647371922008,0,0.457987967009312,0,1.02193298195737,0,0.166211681900156,0,0,0.839107934879214,0,0,0.210998064528027,0,0,0.216388639742091,0,0,0,0,0.988511511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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4001 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6637 | |||
|TSSclassifier=S | |||
|UniProt=E9PBF6 | |||
|association_with_transcript=229bp_to_ENST00000395354_5end | |||
|description=CAGE_peak_9_at_LMNB1_5end | |||
|id=chr5:126113110..126113127,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.35e-22;6!CL:0000404;1.35e-22;6!CL:0000039;2.07e-19;7!CL:0000586;2.07e-19;7!CL:0002322;1.73e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.97e-23,6;CL:0000031,7.97e-23,6;CL:0000404,7.97e-23,6;CL:0000039,2.35e-19,7;CL:0000586,2.35e-19,7;CL:0000047,3.47e-17,8;CL:0002322,1.82e-15,5 | |||
|ontology_enrichment_development_v019=CL:0000031;1.35e-22;6!UBERON:0009117;5.24e-08;10!UBERON:0005564;5.24e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;2.22e-09;22!DOID:2994;2.22e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.20e-09,22;DOID:2994,2.20e-09,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.91e-10;8!UBERON:0003135;2.54e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.60e-10,8;UBERON:0003135,2.72e-07,11 | |||
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| |||
|short_description=p9@LMNB1 | |||
}} |
Revision as of 12:57, 13 September 2013
Short description: | p9@LMNB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_LMNB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 229bp_to_ENST00000395354_5end |
EntrezGene: | LMNB1 |
HGNC: | 6637 |
UniProt: | E9PBF6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.97e-23 | 6 |
neuroblast | 7.97e-23 | 6 |
electrically signaling cell | 7.97e-23 | 6 |
germ line cell | 2.35e-19 | 7 |
germ cell | 2.35e-19 | 7 |
neuronal stem cell | 3.47e-17 | 8 |
embryonic stem cell | 1.82e-15 | 5 |
Ontology term | p-value | n |
---|---|---|
testis | 7.60e-10 | 8 |
male reproductive organ | 2.72e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.20e-09 | 22 |
germ cell cancer | 2.20e-09 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.