FFCP PHASE1:Mm9::chr19:4609920..4609940,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=62|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:4609920..4609940,+|id=chr19:4609920..4609940,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000182,3.00e-28,5;CL:0000057,6.88e-10,1;CL:0000632,6.88e-10,1;CL:0000223,2.44e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002365!1.17e-14!25;UBERON:0002330!1.17e-14!25;UBERON:0005172!1.84e-14!49;UBERON:0005173!1.84e-14!49;UBERON:0002417!1.84e-14!49;UBERON:0000916!1.84e-14!49;UBERON:0002107!9.76e-14!22;UBERON:0007499!9.76e-14!22;UBERON:0006925!9.76e-14!22;UBERON:0009497!9.76e-14!22;UBERON:0000015!9.76e-14!22;UBERON:0002423!9.76e-14!22;UBERON:0006235!9.76e-14!22;UBERON:0008835!9.76e-14!22;UBERON:0003894!9.76e-14!22;UBERON:0004161!9.76e-14!22;UBERON:0008836!9.76e-14!22;UBERON:0009854!7.56e-13!23;UBERON:0009856!7.56e-13!23;UBERON:0005256!3.63e-11!47;UBERON:0009569!1.11e-09!66;UBERON:0003914!1.86e-07!47;UBERON:0005177!5.01e-07!85|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.14e-32,22;UBERON:0007499,6.14e-32,22;UBERON:0006925,6.14e-32,22;UBERON:0009497,6.14e-32,22;UBERON:0000015,6.14e-32,22;UBERON:0002423,6.14e-32,22;UBERON:0006235,6.14e-32,22;UBERON:0008835,6.14e-32,22;UBERON:0003894,6.14e-32,22;UBERON:0004161,6.14e-32,22;UBERON:0008836,6.14e-32,22;UBERON:0009854,1.54e-30,23;UBERON:0009856,1.54e-30,23;UBERON:0002365,4.47e-28,25;UBERON:0002330,4.47e-28,25;UBERON:0005172,1.81e-17,49;UBERON:0005173,1.81e-17,49;UBERON:0002417,1.81e-17,49;UBERON:0000916,1.81e-17,49;UBERON:0005256,1.91e-15,45;UBERON:0003914,9.04e-15,47;UBERON:0003104,6.02e-14,61;UBERON:0009142,6.02e-14,61;UBERON:0009569,7.46e-13,66;UBERON:0003929,1.48e-12,55;UBERON:0002368,1.80e-11,60;UBERON:0005177,1.18e-10,79;UBERON:0002530,1.50e-10,65;UBERON:0000490,2.21e-10,66;UBERON:0005911,6.60e-10,69;UBERON:0000949,1.80e-09,72;UBERON:0002100,2.78e-09,90;UBERON:0001041,1.81e-08,80|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0,0.153606533256243,0.263772575460388,0,0,0.279182999001381,0,0,0,0,0,0,0,0,1.72084775396277,4.75979933595425,1.07940638327563,3.24888208723835,1.79210754838934,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0.173485326766136,0,0.230615497256059,0.301445281105245,0.940709657085638,0.251333182659351,0.741584903203122,0.578397427679647,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.20778804455956,0,0.101839363850316,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0,0,0,0,0.0937017245597288,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0,0,0.330418782983798,0,0,0.232236671860439,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,0,0,1.1270773567308,0.203651327845314,0.387904974335251,0.561086559122548,0.189709611372772,0.295220295959204,0,0.493588655687202,0.296452627087149,0,0.393117990226406,0,0,0.241177159752417,0.25462585178142,0.575392274901621,9.72811360650212,0.823684239564244,10.0637744569148,2.60498663367952,0.312037673114561,0.252578877947112,0.179397413521912,1.92977408545347,0,0,0,0,0,0,0.238043640886014,0.390267295715598,0,0,0,0,0,0,0,0,0.491764273019036,0.551873492609465,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0.218362563746178,0,0,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0,0.168956125490778,0,0.13020438484395,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.19318959403219,0,0,0.214368379079066,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0,0.197008964751127,0,0,0,0,0,0.429742108096597,0,0,0|short_description=p@chr19:4609920..4609940,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=62 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:4609920..4609940,+ | |||
|id=chr19:4609920..4609940,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.00e-28,5;CL:0000057,6.88e-10,1;CL:0000632,6.88e-10,1;CL:0000223,2.44e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002365!1.17e-14!25;UBERON:0002330!1.17e-14!25;UBERON:0005172!1.84e-14!49;UBERON:0005173!1.84e-14!49;UBERON:0002417!1.84e-14!49;UBERON:0000916!1.84e-14!49;UBERON:0002107!9.76e-14!22;UBERON:0007499!9.76e-14!22;UBERON:0006925!9.76e-14!22;UBERON:0009497!9.76e-14!22;UBERON:0000015!9.76e-14!22;UBERON:0002423!9.76e-14!22;UBERON:0006235!9.76e-14!22;UBERON:0008835!9.76e-14!22;UBERON:0003894!9.76e-14!22;UBERON:0004161!9.76e-14!22;UBERON:0008836!9.76e-14!22;UBERON:0009854!7.56e-13!23;UBERON:0009856!7.56e-13!23;UBERON:0005256!3.63e-11!47;UBERON:0009569!1.11e-09!66;UBERON:0003914!1.86e-07!47;UBERON:0005177!5.01e-07!85 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.14e-32,22;UBERON:0007499,6.14e-32,22;UBERON:0006925,6.14e-32,22;UBERON:0009497,6.14e-32,22;UBERON:0000015,6.14e-32,22;UBERON:0002423,6.14e-32,22;UBERON:0006235,6.14e-32,22;UBERON:0008835,6.14e-32,22;UBERON:0003894,6.14e-32,22;UBERON:0004161,6.14e-32,22;UBERON:0008836,6.14e-32,22;UBERON:0009854,1.54e-30,23;UBERON:0009856,1.54e-30,23;UBERON:0002365,4.47e-28,25;UBERON:0002330,4.47e-28,25;UBERON:0005172,1.81e-17,49;UBERON:0005173,1.81e-17,49;UBERON:0002417,1.81e-17,49;UBERON:0000916,1.81e-17,49;UBERON:0005256,1.91e-15,45;UBERON:0003914,9.04e-15,47;UBERON:0003104,6.02e-14,61;UBERON:0009142,6.02e-14,61;UBERON:0009569,7.46e-13,66;UBERON:0003929,1.48e-12,55;UBERON:0002368,1.80e-11,60;UBERON:0005177,1.18e-10,79;UBERON:0002530,1.50e-10,65;UBERON:0000490,2.21e-10,66;UBERON:0005911,6.60e-10,69;UBERON:0000949,1.80e-09,72;UBERON:0002100,2.78e-09,90;UBERON:0001041,1.81e-08,80 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0,0.153606533256243,0.263772575460388,0,0,0.279182999001381,0,0,0,0,0,0,0,0,1.72084775396277,4.75979933595425,1.07940638327563,3.24888208723835,1.79210754838934,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0.173485326766136,0,0.230615497256059,0.301445281105245,0.940709657085638,0.251333182659351,0.741584903203122,0.578397427679647,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.20778804455956,0,0.101839363850316,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0,0,0,0,0.0937017245597288,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0,0,0.330418782983798,0,0,0.232236671860439,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,0,0,1.1270773567308,0.203651327845314,0.387904974335251,0.561086559122548,0.189709611372772,0.295220295959204,0,0.493588655687202,0.296452627087149,0,0.393117990226406,0,0,0.241177159752417,0.25462585178142,0.575392274901621,9.72811360650212,0.823684239564244,10.0637744569148,2.60498663367952,0.312037673114561,0.252578877947112,0.179397413521912,1.92977408545347,0,0,0,0,0,0,0.238043640886014,0.390267295715598,0,0,0,0,0,0,0,0,0.491764273019036,0.551873492609465,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0.218362563746178,0,0,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0,0.168956125490778,0,0.13020438484395,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.19318959403219,0,0,0.214368379079066,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0,0.197008964751127,0,0,0,0,0,0.429742108096597,0,0,0 | |||
|short_description=p@chr19:4609920..4609940,+ | |||
}} |
Revision as of 17:49, 13 September 2013
Short description: | p@chr19:4609920..4609940, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:4609920..4609940, + |
Coexpression cluster: | MCL_coexpression_mm9:62 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.00e-28 | 5 |
fibroblast | 6.88e-10 | 1 |
hepatic stellate cell | 6.88e-10 | 1 |
endodermal cell | 2.44e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
liver | 6.14e-32 | 22 |
epithelial sac | 6.14e-32 | 22 |
digestive gland | 6.14e-32 | 22 |
epithelium of foregut-midgut junction | 6.14e-32 | 22 |
anatomical boundary | 6.14e-32 | 22 |
hepatobiliary system | 6.14e-32 | 22 |
foregut-midgut junction | 6.14e-32 | 22 |
hepatic diverticulum | 6.14e-32 | 22 |
liver primordium | 6.14e-32 | 22 |
septum transversum | 6.14e-32 | 22 |
liver bud | 6.14e-32 | 22 |
digestive tract diverticulum | 1.54e-30 | 23 |
sac | 1.54e-30 | 23 |
exocrine gland | 4.47e-28 | 25 |
exocrine system | 4.47e-28 | 25 |
abdomen element | 1.81e-17 | 49 |
abdominal segment element | 1.81e-17 | 49 |
abdominal segment of trunk | 1.81e-17 | 49 |
abdomen | 1.81e-17 | 49 |
trunk mesenchyme | 1.91e-15 | 45 |
epithelial tube | 9.04e-15 | 47 |
mesenchyme | 6.02e-14 | 61 |
entire embryonic mesenchyme | 6.02e-14 | 61 |
subdivision of trunk | 7.46e-13 | 66 |
gut epithelium | 1.48e-12 | 55 |
endocrine gland | 1.80e-11 | 60 |
trunk region element | 1.18e-10 | 79 |
gland | 1.50e-10 | 65 |
unilaminar epithelium | 2.21e-10 | 66 |
endo-epithelium | 6.60e-10 | 69 |
endocrine system | 1.80e-09 | 72 |
trunk | 2.78e-09 | 90 |
foregut | 1.81e-08 | 80 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.