FFCP PHASE1:Hg19::chr6:137243349..137243360,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=340146|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15621|TSSclassifier=S|UniProt=Q5M8T2|association_with_transcript=-41bp_to_ENST00000331858,NM_001008783,uc003qhe.2_5end|coexpression_cluster_id=C184|description=CAGE_peak_3_at_SLC35D3_5end|id=chr6:137243349..137243360,+|ontology_enrichment_celltype=CL:0002322!9.44e-12!5;CL:0000242!2.09e-09!2|ontology_enrichment_celltype_v019=CL:0000123;2.42e-50;2!CL:0000242;2.42e-50;2!CL:0000167;2.16e-26;1!CL:0000164;2.16e-26;1!CL:0000502;2.16e-26;1!CL:0000172;2.16e-26;1!CL:0000173;2.16e-26;1!CL:0000312;7.35e-21;5!CL:0000240;1.44e-17;6!CL:0000311;1.44e-17;6!CL:0000079;1.44e-17;6!CL:0000237;1.44e-17;6!CL:0002535;1.37e-13;2!CL:0000362;4.67e-12;9!CL:0002159;4.34e-08;14|ontology_enrichment_celltype_v019_2=CL:0000242,2.42e-50,2;CL:0000167,2.16e-26,1;CL:0000164,2.16e-26,1;CL:0000502,2.16e-26,1;CL:0000172,2.16e-26,1;CL:0000173,2.16e-26,1;CL:0002351,2.16e-26,1;CL:0000312,7.35e-21,5;CL:0000240,1.44e-17,6;CL:0000311,1.44e-17,6;CL:0000079,1.44e-17,6;CL:0000237,1.44e-17,6;CL:0000036,1.44e-17,6;CL:0000357,1.44e-17,6;CL:0000114,1.44e-17,6;CL:0002535,1.55e-13,2;CL:0000362,4.67e-12,9;CL:0002159,4.34e-08,14|ontology_enrichment_development_v019=CL:0002351;2.16e-26;1!CL:0000357;1.44e-17;6!CL:0000114;1.44e-17;6!UBERON:0010122;1.37e-13;2!UBERON:0003056;1.67e-09;3|ontology_enrichment_disease=DOID:3119!7.65e-13!14|ontology_enrichment_disease_v019=DOID:4430;2.16e-26;1!DOID:4362;1.04e-20;5|ontology_enrichment_disease_v019_2=DOID:4430,2.16e-26,1;DOID:4362,1.10e-20,5|ontology_enrichment_uberon=UBERON:0000369!1.91e-16!4;UBERON:0002435!1.91e-16!4;UBERON:0000204!1.91e-16!4;UBERON:0010082!1.91e-16!4;UBERON:0002308!2.97e-15!9;UBERON:0000125!2.97e-15!9;UBERON:0009663!3.15e-14!7;UBERON:0005383!6.63e-13!3;UBERON:0005382!6.63e-13!3;UBERON:0002420!5.48e-11!9;UBERON:0007245!5.48e-11!9;UBERON:0010009!5.48e-11!9;UBERON:0010011!5.48e-11!9;UBERON:0000454!5.48e-11!9;UBERON:0001873!3.24e-09!2;UBERON:0010122!3.24e-09!2;UBERON:0000966!9.97e-08!5;UBERON:0005388!9.97e-08!5;UBERON:0001802!9.97e-08!5|ontology_enrichment_uberon_v019=UBERON:0000002;1.93e-17;6!UBERON:0001560;1.93e-17;6!UBERON:0001873;1.37e-13;2!UBERON:0006955;1.37e-13;2!UBERON:0004801;1.37e-13;2!UBERON:0005383;1.67e-09;3!UBERON:0005382;1.67e-09;3!UBERON:0001003;1.31e-07;15!UBERON:0007376;1.31e-07;15!UBERON:0000369;1.92e-07;4!UBERON:0002435;1.92e-07;4!UBERON:0000204;1.92e-07;4!UBERON:0000995;8.97e-07;17|ontology_enrichment_uberon_v019_2=UBERON:0000002,2.01e-17,6;UBERON:0001560,2.01e-17,6;UBERON:0001873,1.37e-13,2;UBERON:0010122,1.37e-13,2;UBERON:0006955,1.55e-13,2;UBERON:0004801,1.55e-13,2;UBERON:0005383,1.67e-09,3;UBERON:0005382,1.67e-09,3;UBERON:0001003,1.31e-07,15;UBERON:0007376,1.31e-07,15;UBERON:0007383,1.31e-07,15;UBERON:0000369,1.92e-07,4;UBERON:0002435,1.92e-07,4;UBERON:0000204,1.92e-07,4;UBERON:0010082,1.92e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0.689486746482929,0.291604613383254,0.173624994933292,0.885741385813839,1.20596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0.937057782901357,0,0,0,0,0,0,0,0.150323419414493,0.311064574191741,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0.144090417154106,0,0.857974989309823,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,6.08835377548946,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.785577949580009,0,0,0,0,1.50100742770978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44484980578001,0.397901550322736,0,0,0,0.905777061400041,0.154348316215889,0,4.23285566725371,0,8.48435569565853,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0|short_description=p3@SLC35D3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=340146 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15621 | |||
|TSSclassifier=S | |||
|UniProt=Q5M8T2 | |||
|association_with_transcript=-41bp_to_ENST00000331858,NM_001008783,uc003qhe.2_5end | |||
|coexpression_cluster_id=C184 | |||
|description=CAGE_peak_3_at_SLC35D3_5end | |||
|id=chr6:137243349..137243360,+ | |||
|ontology_enrichment_celltype=CL:0002322!9.44e-12!5;CL:0000242!2.09e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.42e-50;2!CL:0000242;2.42e-50;2!CL:0000167;2.16e-26;1!CL:0000164;2.16e-26;1!CL:0000502;2.16e-26;1!CL:0000172;2.16e-26;1!CL:0000173;2.16e-26;1!CL:0000312;7.35e-21;5!CL:0000240;1.44e-17;6!CL:0000311;1.44e-17;6!CL:0000079;1.44e-17;6!CL:0000237;1.44e-17;6!CL:0002535;1.37e-13;2!CL:0000362;4.67e-12;9!CL:0002159;4.34e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.42e-50,2;CL:0000167,2.16e-26,1;CL:0000164,2.16e-26,1;CL:0000502,2.16e-26,1;CL:0000172,2.16e-26,1;CL:0000173,2.16e-26,1;CL:0002351,2.16e-26,1;CL:0000312,7.35e-21,5;CL:0000240,1.44e-17,6;CL:0000311,1.44e-17,6;CL:0000079,1.44e-17,6;CL:0000237,1.44e-17,6;CL:0000036,1.44e-17,6;CL:0000357,1.44e-17,6;CL:0000114,1.44e-17,6;CL:0002535,1.55e-13,2;CL:0000362,4.67e-12,9;CL:0002159,4.34e-08,14 | |||
|ontology_enrichment_development_v019=CL:0002351;2.16e-26;1!CL:0000357;1.44e-17;6!CL:0000114;1.44e-17;6!UBERON:0010122;1.37e-13;2!UBERON:0003056;1.67e-09;3 | |||
|ontology_enrichment_disease=DOID:3119!7.65e-13!14 | |||
|ontology_enrichment_disease_v019=DOID:4430;2.16e-26;1!DOID:4362;1.04e-20;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,2.16e-26,1;DOID:4362,1.10e-20,5 | |||
|ontology_enrichment_uberon=UBERON:0000369!1.91e-16!4;UBERON:0002435!1.91e-16!4;UBERON:0000204!1.91e-16!4;UBERON:0010082!1.91e-16!4;UBERON:0002308!2.97e-15!9;UBERON:0000125!2.97e-15!9;UBERON:0009663!3.15e-14!7;UBERON:0005383!6.63e-13!3;UBERON:0005382!6.63e-13!3;UBERON:0002420!5.48e-11!9;UBERON:0007245!5.48e-11!9;UBERON:0010009!5.48e-11!9;UBERON:0010011!5.48e-11!9;UBERON:0000454!5.48e-11!9;UBERON:0001873!3.24e-09!2;UBERON:0010122!3.24e-09!2;UBERON:0000966!9.97e-08!5;UBERON:0005388!9.97e-08!5;UBERON:0001802!9.97e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;1.93e-17;6!UBERON:0001560;1.93e-17;6!UBERON:0001873;1.37e-13;2!UBERON:0006955;1.37e-13;2!UBERON:0004801;1.37e-13;2!UBERON:0005383;1.67e-09;3!UBERON:0005382;1.67e-09;3!UBERON:0001003;1.31e-07;15!UBERON:0007376;1.31e-07;15!UBERON:0000369;1.92e-07;4!UBERON:0002435;1.92e-07;4!UBERON:0000204;1.92e-07;4!UBERON:0000995;8.97e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,2.01e-17,6;UBERON:0001560,2.01e-17,6;UBERON:0001873,1.37e-13,2;UBERON:0010122,1.37e-13,2;UBERON:0006955,1.55e-13,2;UBERON:0004801,1.55e-13,2;UBERON:0005383,1.67e-09,3;UBERON:0005382,1.67e-09,3;UBERON:0001003,1.31e-07,15;UBERON:0007376,1.31e-07,15;UBERON:0007383,1.31e-07,15;UBERON:0000369,1.92e-07,4;UBERON:0002435,1.92e-07,4;UBERON:0000204,1.92e-07,4;UBERON:0010082,1.92e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0.689486746482929,0.291604613383254,0.173624994933292,0.885741385813839,1.20596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0.937057782901357,0,0,0,0,0,0,0,0.150323419414493,0.311064574191741,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0.144090417154106,0,0.857974989309823,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,6.08835377548946,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.785577949580009,0,0,0,0,1.50100742770978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44484980578001,0.397901550322736,0,0,0,0.905777061400041,0.154348316215889,0,4.23285566725371,0,8.48435569565853,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p3@SLC35D3 | |||
}} |
Revision as of 18:13, 13 September 2013
Short description: | p3@SLC35D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SLC35D3_5end |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | -41bp_to_ENST00000331858, NM_001008783, uc003qhe.2_5end |
EntrezGene: | SLC35D3 |
HGNC: | 15621 |
UniProt: | Q5M8T2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.42e-50 | 2 |
peptide hormone secreting cell | 2.16e-26 | 1 |
enteroendocrine cell | 2.16e-26 | 1 |
type D enteroendocrine cell | 2.16e-26 | 1 |
somatostatin secreting cell | 2.16e-26 | 1 |
pancreatic D cell | 2.16e-26 | 1 |
progenitor cell of endocrine pancreas | 2.16e-26 | 1 |
keratinocyte | 7.35e-21 | 5 |
stratified squamous epithelial cell | 1.44e-17 | 6 |
keratin accumulating cell | 1.44e-17 | 6 |
stratified epithelial cell | 1.44e-17 | 6 |
keratinizing barrier epithelial cell | 1.44e-17 | 6 |
epithelial fate stem cell | 1.44e-17 | 6 |
stratified epithelial stem cell | 1.44e-17 | 6 |
surface ectodermal cell | 1.44e-17 | 6 |
epithelial cell of cervix | 1.55e-13 | 2 |
epidermal cell | 4.67e-12 | 9 |
general ecto-epithelial cell | 4.34e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 2.01e-17 | 6 |
neck of organ | 2.01e-17 | 6 |
caudate nucleus | 1.37e-13 | 2 |
future caudate nucleus | 1.37e-13 | 2 |
uterine epithelium | 1.55e-13 | 2 |
cervix epithelium | 1.55e-13 | 2 |
caudate-putamen | 1.67e-09 | 3 |
dorsal striatum | 1.67e-09 | 3 |
skin epidermis | 1.31e-07 | 15 |
outer epithelium | 1.31e-07 | 15 |
enveloping layer of ectoderm | 1.31e-07 | 15 |
corpus striatum | 1.92e-07 | 4 |
striatum | 1.92e-07 | 4 |
ventral part of telencephalon | 1.92e-07 | 4 |
future corpus striatum | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 2.16e-26 | 1 |
cervical cancer | 1.10e-20 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.