FFCP PHASE1:Mm9::chr2:13415301..13415317,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:13415301..13415317,-|id=chr2:13415301..13415317,-|ontology_enrichment_celltype=CL:0000239!4.06e-13!6;CL:0000677!4.06e-13!6;CL:0000212!4.06e-13!6;CL:0000584!4.06e-13!6;CL:0000075!4.13e-11!7;CL:0002563!1.96e-08!9;CL:0002251!1.96e-08!9;CL:0000473!1.24e-07!3;CL:0000627!1.24e-07!3;CL:0000682!1.24e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.27e-22,6;CL:0000677,1.27e-22,6;CL:0000584,1.27e-22,6;CL:0000075,2.53e-19,7;CL:0002563,6.45e-15,9;CL:0002251,6.45e-15,9;CL:0000682,1.26e-12,3;CL:0000066,3.14e-11,25;CL:0002076,9.94e-09,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.77e-16!15;UBERON:0000160!1.47e-14!43;UBERON:0001242!2.17e-12!13;UBERON:0000060!2.17e-12!13;UBERON:0001262!2.17e-12!13;UBERON:0004786!2.17e-12!13;UBERON:0005409!1.96e-11!59;UBERON:0004923!8.21e-11!24;UBERON:0003350!1.96e-08!9;UBERON:0004808!1.96e-08!9;UBERON:0001277!1.96e-08!9;UBERON:0000331!2.95e-07!3;UBERON:0002116!2.95e-07!3;UBERON:0001204!2.95e-07!3;UBERON:0002465!2.95e-07!3;UBERON:0001168!2.95e-07!3;UBERON:0000485!9.80e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.02e-29,15;UBERON:0000160,2.00e-24,31;UBERON:0001242,1.88e-22,13;UBERON:0001262,1.88e-22,13;UBERON:0004786,1.88e-22,13;UBERON:0004923,1.14e-17,24;UBERON:0005409,3.58e-15,47;UBERON:0002108,5.69e-15,4;UBERON:0003350,6.45e-15,9;UBERON:0004808,6.45e-15,9;UBERON:0001277,6.45e-15,9;UBERON:0000485,4.16e-12,11;UBERON:0000331,6.01e-12,3;UBERON:0002116,6.01e-12,3;UBERON:0001204,6.01e-12,3;UBERON:0001168,6.01e-12,3;UBERON:0001962,2.80e-09,2;UBERON:0001961,2.80e-09,2;UBERON:0001744,2.80e-09,2|phase1_expression=0,47.1116800313137,42.3149292632269,2.11724947914781,1.50268718983904,12.7588246653036,10.9797941079897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,44.6378859593605,56.2052738614567,39.0477735598214,24.5534337810673,22.6244794320183,8.36103045608045,5.29263272495855,2.43903561720835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0.258937883647172,0,0,0,0,0,0,0,0.988779870937496,0,0,0,0,0,0,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201683524623343,0,0.380451252225118,2.37264530772256,0.164698954724011,0.251335208800269,0.397912944082302,0,7.19055526923377,2.59365659849633,1.7922714592893,0,0,0,0,0.193952487167626,0.210407459670956,1.13825766823663,1.32849133181642,2.19798218977925,1.72756029490521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p@chr2:13415301..13415317,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:13415301..13415317,- | |||
|id=chr2:13415301..13415317,- | |||
|ontology_enrichment_celltype=CL:0000239!4.06e-13!6;CL:0000677!4.06e-13!6;CL:0000212!4.06e-13!6;CL:0000584!4.06e-13!6;CL:0000075!4.13e-11!7;CL:0002563!1.96e-08!9;CL:0002251!1.96e-08!9;CL:0000473!1.24e-07!3;CL:0000627!1.24e-07!3;CL:0000682!1.24e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.27e-22,6;CL:0000677,1.27e-22,6;CL:0000584,1.27e-22,6;CL:0000075,2.53e-19,7;CL:0002563,6.45e-15,9;CL:0002251,6.45e-15,9;CL:0000682,1.26e-12,3;CL:0000066,3.14e-11,25;CL:0002076,9.94e-09,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.77e-16!15;UBERON:0000160!1.47e-14!43;UBERON:0001242!2.17e-12!13;UBERON:0000060!2.17e-12!13;UBERON:0001262!2.17e-12!13;UBERON:0004786!2.17e-12!13;UBERON:0005409!1.96e-11!59;UBERON:0004923!8.21e-11!24;UBERON:0003350!1.96e-08!9;UBERON:0004808!1.96e-08!9;UBERON:0001277!1.96e-08!9;UBERON:0000331!2.95e-07!3;UBERON:0002116!2.95e-07!3;UBERON:0001204!2.95e-07!3;UBERON:0002465!2.95e-07!3;UBERON:0001168!2.95e-07!3;UBERON:0000485!9.80e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.02e-29,15;UBERON:0000160,2.00e-24,31;UBERON:0001242,1.88e-22,13;UBERON:0001262,1.88e-22,13;UBERON:0004786,1.88e-22,13;UBERON:0004923,1.14e-17,24;UBERON:0005409,3.58e-15,47;UBERON:0002108,5.69e-15,4;UBERON:0003350,6.45e-15,9;UBERON:0004808,6.45e-15,9;UBERON:0001277,6.45e-15,9;UBERON:0000485,4.16e-12,11;UBERON:0000331,6.01e-12,3;UBERON:0002116,6.01e-12,3;UBERON:0001204,6.01e-12,3;UBERON:0001168,6.01e-12,3;UBERON:0001962,2.80e-09,2;UBERON:0001961,2.80e-09,2;UBERON:0001744,2.80e-09,2 | |||
|phase1_expression=0,47.1116800313137,42.3149292632269,2.11724947914781,1.50268718983904,12.7588246653036,10.9797941079897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,44.6378859593605,56.2052738614567,39.0477735598214,24.5534337810673,22.6244794320183,8.36103045608045,5.29263272495855,2.43903561720835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0.258937883647172,0,0,0,0,0,0,0,0.988779870937496,0,0,0,0,0,0,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201683524623343,0,0.380451252225118,2.37264530772256,0.164698954724011,0.251335208800269,0.397912944082302,0,7.19055526923377,2.59365659849633,1.7922714592893,0,0,0,0,0.193952487167626,0.210407459670956,1.13825766823663,1.32849133181642,2.19798218977925,1.72756029490521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr2:13415301..13415317,- | |||
}} |
Revision as of 22:10, 13 September 2013
Short description: | p@chr2:13415301..13415317, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:13415301..13415317, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.27e-22 | 6 |
gut absorptive cell | 1.27e-22 | 6 |
enterocyte | 1.27e-22 | 6 |
columnar/cuboidal epithelial cell | 2.53e-19 | 7 |
intestinal epithelial cell | 6.45e-15 | 9 |
epithelial cell of alimentary canal | 6.45e-15 | 9 |
M cell of gut | 1.26e-12 | 3 |
epithelial cell | 3.14e-11 | 25 |
endo-epithelial cell | 9.94e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.02e-29 | 15 |
intestine | 2.00e-24 | 31 |
intestinal mucosa | 1.88e-22 | 13 |
wall of intestine | 1.88e-22 | 13 |
gastrointestinal system mucosa | 1.88e-22 | 13 |
organ component layer | 1.14e-17 | 24 |
gastrointestinal system | 3.58e-15 | 47 |
small intestine | 5.69e-15 | 4 |
epithelium of mucosa | 6.45e-15 | 9 |
gastrointestinal system epithelium | 6.45e-15 | 9 |
intestinal epithelium | 6.45e-15 | 9 |
simple columnar epithelium | 4.16e-12 | 11 |
ileal mucosa | 6.01e-12 | 3 |
ileum | 6.01e-12 | 3 |
mucosa of small intestine | 6.01e-12 | 3 |
wall of small intestine | 6.01e-12 | 3 |
gut-associated lymphoid tissue | 2.80e-09 | 2 |
mucosa-associated lymphoid tissue | 2.80e-09 | 2 |
lymphoid tissue | 2.80e-09 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.