FFCP PHASE1:Mm9::chr2:71381930..71381935,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=184|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:71381930..71381935,-|id=chr2:71381930..71381935,-|ontology_enrichment_celltype=CL:0000540!1.04e-07!33;CL:0000047!1.04e-07!33;CL:0000031!1.04e-07!33;CL:0000404!1.04e-07!33;CL:0000221!1.58e-07!44;CL:0000133!1.58e-07!44;CL:0000393!5.29e-07!39;CL:0000211!5.29e-07!39|ontology_enrichment_celltype_v019_2=CL:0002608,1.70e-39,3;CL:0002609,1.98e-20,6;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002613,7.15e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.58e-10!102;UBERON:0000924!6.58e-10!102;UBERON:0006601!6.58e-10!102;UBERON:0003056!3.40e-07!49;UBERON:0000033!5.62e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001954,1.08e-17,7;UBERON:0003022,1.08e-17,7;UBERON:0002421,1.08e-17,7;UBERON:0000349,1.08e-17,7;UBERON:0002600,1.08e-17,7;UBERON:0003528,4.90e-10,29;UBERON:0002791,4.90e-10,29;UBERON:0001893,4.90e-10,29;UBERON:0002020,1.04e-08,34;UBERON:0002619,5.82e-08,17;UBERON:0002780,1.01e-07,39;UBERON:0001890,1.01e-07,39;UBERON:0006240,1.01e-07,39;UBERON:0003080,1.49e-07,40;UBERON:0000369,4.77e-07,5;UBERON:0002435,4.77e-07,5;UBERON:0000204,4.77e-07,5;UBERON:0010082,4.77e-07,5|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0.207379224616955,0.810035629990144,0,0,0,1.34739879136449,4.12135525378416,0,0,0,0,0.263772575460388,0.640413505216868,1.04182674111352,0,0,0.30559649555362,0,0,0,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879580464790051,0,0,0,0.324482526135515,0,0,0,0,0.390361328888111,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0,0,0,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327869890753351,0,0.631016438832513,0,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0.675022500231806,0.45032120322422,0,0,0.31136204275253,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0,0,0.115884325944855,0.192909220463705,0,0,0,0.177475806159338,0.476872379894642,0,0.0941093804153306,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:71381930..71381935,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=184 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:71381930..71381935,- | |||
|id=chr2:71381930..71381935,- | |||
|ontology_enrichment_celltype=CL:0000540!1.04e-07!33;CL:0000047!1.04e-07!33;CL:0000031!1.04e-07!33;CL:0000404!1.04e-07!33;CL:0000221!1.58e-07!44;CL:0000133!1.58e-07!44;CL:0000393!5.29e-07!39;CL:0000211!5.29e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002608,1.70e-39,3;CL:0002609,1.98e-20,6;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002613,7.15e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.58e-10!102;UBERON:0000924!6.58e-10!102;UBERON:0006601!6.58e-10!102;UBERON:0003056!3.40e-07!49;UBERON:0000033!5.62e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,1.08e-17,7;UBERON:0003022,1.08e-17,7;UBERON:0002421,1.08e-17,7;UBERON:0000349,1.08e-17,7;UBERON:0002600,1.08e-17,7;UBERON:0003528,4.90e-10,29;UBERON:0002791,4.90e-10,29;UBERON:0001893,4.90e-10,29;UBERON:0002020,1.04e-08,34;UBERON:0002619,5.82e-08,17;UBERON:0002780,1.01e-07,39;UBERON:0001890,1.01e-07,39;UBERON:0006240,1.01e-07,39;UBERON:0003080,1.49e-07,40;UBERON:0000369,4.77e-07,5;UBERON:0002435,4.77e-07,5;UBERON:0000204,4.77e-07,5;UBERON:0010082,4.77e-07,5 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0.207379224616955,0.810035629990144,0,0,0,1.34739879136449,4.12135525378416,0,0,0,0,0.263772575460388,0.640413505216868,1.04182674111352,0,0,0.30559649555362,0,0,0,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879580464790051,0,0,0,0.324482526135515,0,0,0,0,0.390361328888111,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0,0,0,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327869890753351,0,0.631016438832513,0,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0.675022500231806,0.45032120322422,0,0,0.31136204275253,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0,0,0.115884325944855,0.192909220463705,0,0,0,0.177475806159338,0.476872379894642,0,0.0941093804153306,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:71381930..71381935,- | |||
}} |
Revision as of 00:27, 14 September 2013
Short description: | p@chr2:71381930..71381935, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:71381930..71381935, - |
Coexpression cluster: | MCL_coexpression_mm9:184 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hippocampal neuron | 1.70e-39 | 3 |
neuron of cerebral cortex | 1.98e-20 | 6 |
CNS neuron (sensu Vertebrata) | 2.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-12 | 23 |
striatum neuron | 7.15e-11 | 3 |
neuron | 6.05e-09 | 33 |
neuronal stem cell | 6.05e-09 | 33 |
neuroblast | 6.05e-09 | 33 |
electrically signaling cell | 6.05e-09 | 33 |
electrically responsive cell | 1.01e-07 | 39 |
electrically active cell | 1.01e-07 | 39 |
neural cell | 4.30e-07 | 43 |
ectodermal cell | 5.93e-07 | 44 |
neurectodermal cell | 5.93e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 1.08e-17 | 7 |
lobe parts of cerebral cortex | 1.08e-17 | 7 |
hippocampal formation | 1.08e-17 | 7 |
limbic system | 1.08e-17 | 7 |
limbic lobe | 1.08e-17 | 7 |
brain grey matter | 4.90e-10 | 29 |
regional part of telencephalon | 4.90e-10 | 29 |
telencephalon | 4.90e-10 | 29 |
gray matter | 1.04e-08 | 34 |
regional part of cerebral cortex | 5.82e-08 | 17 |
regional part of forebrain | 1.01e-07 | 39 |
forebrain | 1.01e-07 | 39 |
future forebrain | 1.01e-07 | 39 |
anterior neural tube | 1.49e-07 | 40 |
corpus striatum | 4.77e-07 | 5 |
striatum | 4.77e-07 | 5 |
ventral part of telencephalon | 4.77e-07 | 5 |
future corpus striatum | 4.77e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.