FFCP PHASE1:Mm9::chr4:135528535..135528546,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=26394|HGNC=|UniProt=Q9WTL7|association_with_transcript=0bp_to_ENSMUST00000067567_5end|description=CAGE_peak_3_at_Lypla2_5end|id=chr4:135528535..135528546,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,3.19e-10,23;CL:0000337,3.19e-10,23;CL:0002321,1.54e-07,70;CL:0002319,2.12e-07,43;CL:0000221,4.78e-07,44;CL:0000133,4.78e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.47e-07,15;UBERON:0003076,4.23e-07,12;UBERON:0003057,4.23e-07,12;UBERON:0001016,7.67e-07,75|phase1_expression=0.160148847104794,2.09385244583617,3.18499467572675,2.72217790176147,2.00358291978539,1.00727563147134,0.934450562382103,0.774739940649458,0.563154888606667,0.468129052643987,1.54096171402954,0.478632953972018,1.02720437958723,0.961624426608971,0,0.404950534779652,0,0.473193248037357,0.822686601634433,0.84877930359606,0.765389611359628,0.496454756004426,0.522399578277871,1.59992422793407,2.06468352960453,1.72269589234506,2.58457197695445,3.878482188346,4.18051522804023,2.77233142735924,1.99557459589774,1.27006134691926,1.23012957516914,0,1.73310971850765,0.997407872150954,0.612508068787107,1.25559489221072,0.7813353445238,2.61761871986899,0,2.73218193983378,1.45653105909346,0.629484089877886,0,0,0.782391344348039,1.74420125104357,0.878744730937887,0.972149495371417,1.39986421625363,0,1.17447824240415,0.725362142011344,1.00828139742739,0.771778308107841,0,2.06268836910977,3.03474691289397,1.5869729378161,0.633831403506179,1.0165335962074,2.66788438833342,1.7997994345628,0.988866362566974,2.8419204597844,1.19840044207362,3.07374644257244,1.14058573539325,2.16009501330705,1.26194976810829,1.42825492201902,1.54607978666129,1.46988959057945,1.91690942036473,0,0,2.042997409363,1.38245879930619,3.29715719325485,1.9212405156506,3.12548022334056,2.51264699101243,1.12552522006336,1.22238598221448,1.17851434189467,1.56608848879013,2.23679334990361,3.48340489332647,2.56943304363071,0,0.860423876981386,1.3599426674155,1.61910957491345,0.649776417447669,2.24013443548668,0.983110940922263,0.170430322578058,1.03914401841148,0.35333957451034,0.845060518660083,0,0,0,0.432982082022428,0.506719730950197,2.52762222507392,1.82694207550496,0.258937883647172,1.03909497345377,1.73485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.705532242814229,0.376999773989026,0.494389935468748,1.3013942122792,0.884610551949874,0.808834249737046,0.441683036920787,0.969750506270444,0,1.75668478206928,3.56059401582874,2.29911349687732,0.359445373517761,1.19980546198682,0.381210681219194,1.64769703345305,0.457500602818626,1.50785222535437,0.869121600961382,0.767146371990992,0.62336413367868,0.811206315338788,0.712875546952214,0.622034853050465,0.505445516867349,0.420883711772948,0.910843100738926,0.689706313300419,1.0803727788321,0.90422890701429,0.612328492361951,0.896796041993948,0.562210347358373,0.258703370739016,1.72454394346274,0.756424320671277,0.703804496655795,1.31517439456545,0.278047249225598,0,0.823128545631774,0.59710280045548,0,0.51469581422943,0,0.621377317606506,0.703578179943289,0.540186184383045,0.946978942340841,0.787056926989615,0.617068451549513,0.232533944750408,0.536546802799238,0.350296027101508,0.493679549740441,0.164167464079095,0.162137619091711,0.877199924551994,0,0.402619256281115,1.05144974282064,0.92614151141356,2.64335026387038,1.05780226665418,1.06644125267617,0.232236671860439,0.128867461322093,0.403367049246685,0.22237804384487,0.760902504450237,0.474529061544512,0.658795818896044,0,0.596869416123452,1.16978452271472,2.69645822596266,1.29682829924817,1.99141273254367,0.569003702859245,0.685491075658373,1.1270773567308,0.407302655690628,0.387904974335251,0.631222379012867,0.189709611372772,0.590440591918409,0.627994911365499,0.740382983530803,1.77871576252289,0.333690211432188,0.982794975566015,1.12431056192427,0.608580364165509,0,0.763877555344259,0.575392274901621,0.648540907100142,0.549122826376163,0,1.11642284300551,0.936113019343682,1.26289438973556,1.61457672169721,2.41221760681684,0.369506380333209,1.70542270593436,0.977789858652155,0.678980343100753,0.234690248288502,0.502518772325447,0.238043640886014,0.780534591431195,0.630540576424764,0.44292937929755,0.478364305972461,0.491589944147214,0.172684981865896,0.289298117163023,0,0,0.983528546038072,0.827810238914197,1.60550589987792,1.52375192569864,0.163934945376675,0,0.631016438832513,0.780877488593277,0.646270193198397,0.955875191810208,0.668396022247182,0.566153061577665,0.404810701674894,0.876767573733936,1.18586333383957,0.321321316421807,0.425820255624806,0.534196811001766,0.651547837414304,0.164970122972535,0,0.242780636154981,0.906970670894253,0.943025398779491,0.295301892880773,0.922305443831782,0.258428293168221,0.363533729477506,0.356497378384721,0.948110273807448,1.05418608574999,0,0,1.08036656418786,1.16422815404479,0,0.532020700926821,0.891844088010353,0.987294123612726,1.8267896946876,1.40803024838226,0.635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| ||
|EntrezGene=26394 | |||
|HGNC= | |||
|UniProt=Q9WTL7 | |||
|association_with_transcript=0bp_to_ENSMUST00000067567_5end | |||
|description=CAGE_peak_3_at_Lypla2_5end | |||
|id=chr4:135528535..135528546,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.19e-10,23;CL:0000337,3.19e-10,23;CL:0002321,1.54e-07,70;CL:0002319,2.12e-07,43;CL:0000221,4.78e-07,44;CL:0000133,4.78e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.47e-07,15;UBERON:0003076,4.23e-07,12;UBERON:0003057,4.23e-07,12;UBERON:0001016,7.67e-07,75 | |||
|phase1_expression=0.160148847104794,2.09385244583617,3.18499467572675,2.72217790176147,2.00358291978539,1.00727563147134,0.934450562382103,0.774739940649458,0.563154888606667,0.468129052643987,1.54096171402954,0.478632953972018,1.02720437958723,0.961624426608971,0,0.404950534779652,0,0.473193248037357,0.822686601634433,0.84877930359606,0.765389611359628,0.496454756004426,0.522399578277871,1.59992422793407,2.06468352960453,1.72269589234506,2.58457197695445,3.878482188346,4.18051522804023,2.77233142735924,1.99557459589774,1.27006134691926,1.23012957516914,0,1.73310971850765,0.997407872150954,0.612508068787107,1.25559489221072,0.7813353445238,2.61761871986899,0,2.73218193983378,1.45653105909346,0.629484089877886,0,0,0.782391344348039,1.74420125104357,0.878744730937887,0.972149495371417,1.39986421625363,0,1.17447824240415,0.725362142011344,1.00828139742739,0.771778308107841,0,2.06268836910977,3.03474691289397,1.5869729378161,0.633831403506179,1.0165335962074,2.66788438833342,1.7997994345628,0.988866362566974,2.8419204597844,1.19840044207362,3.07374644257244,1.14058573539325,2.16009501330705,1.26194976810829,1.42825492201902,1.54607978666129,1.46988959057945,1.91690942036473,0,0,2.042997409363,1.38245879930619,3.29715719325485,1.9212405156506,3.12548022334056,2.51264699101243,1.12552522006336,1.22238598221448,1.17851434189467,1.56608848879013,2.23679334990361,3.48340489332647,2.56943304363071,0,0.860423876981386,1.3599426674155,1.61910957491345,0.649776417447669,2.24013443548668,0.983110940922263,0.170430322578058,1.03914401841148,0.35333957451034,0.845060518660083,0,0,0,0.432982082022428,0.506719730950197,2.52762222507392,1.82694207550496,0.258937883647172,1.03909497345377,1.73485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.705532242814229,0.376999773989026,0.494389935468748,1.3013942122792,0.884610551949874,0.808834249737046,0.441683036920787,0.969750506270444,0,1.75668478206928,3.56059401582874,2.29911349687732,0.359445373517761,1.19980546198682,0.381210681219194,1.64769703345305,0.457500602818626,1.50785222535437,0.869121600961382,0.767146371990992,0.62336413367868,0.811206315338788,0.712875546952214,0.622034853050465,0.505445516867349,0.420883711772948,0.910843100738926,0.689706313300419,1.0803727788321,0.90422890701429,0.612328492361951,0.896796041993948,0.562210347358373,0.258703370739016,1.72454394346274,0.756424320671277,0.703804496655795,1.31517439456545,0.278047249225598,0,0.823128545631774,0.59710280045548,0,0.51469581422943,0,0.621377317606506,0.703578179943289,0.540186184383045,0.946978942340841,0.787056926989615,0.617068451549513,0.232533944750408,0.536546802799238,0.350296027101508,0.493679549740441,0.164167464079095,0.162137619091711,0.877199924551994,0,0.402619256281115,1.05144974282064,0.92614151141356,2.64335026387038,1.05780226665418,1.06644125267617,0.232236671860439,0.128867461322093,0.403367049246685,0.22237804384487,0.760902504450237,0.474529061544512,0.658795818896044,0,0.596869416123452,1.16978452271472,2.69645822596266,1.29682829924817,1.99141273254367,0.569003702859245,0.685491075658373,1.1270773567308,0.407302655690628,0.387904974335251,0.631222379012867,0.189709611372772,0.590440591918409,0.627994911365499,0.740382983530803,1.77871576252289,0.333690211432188,0.982794975566015,1.12431056192427,0.608580364165509,0,0.763877555344259,0.575392274901621,0.648540907100142,0.549122826376163,0,1.11642284300551,0.936113019343682,1.26289438973556,1.61457672169721,2.41221760681684,0.369506380333209,1.70542270593436,0.977789858652155,0.678980343100753,0.234690248288502,0.502518772325447,0.238043640886014,0.780534591431195,0.630540576424764,0.44292937929755,0.478364305972461,0.491589944147214,0.172684981865896,0.289298117163023,0,0,0.983528546038072,0.827810238914197,1.60550589987792,1.52375192569864,0.163934945376675,0,0.631016438832513,0.780877488593277,0.646270193198397,0.955875191810208,0.668396022247182,0.566153061577665,0.404810701674894,0.876767573733936,1.18586333383957,0.321321316421807,0.425820255624806,0.534196811001766,0.651547837414304,0.164970122972535,0,0.242780636154981,0.906970670894253,0.943025398779491,0.295301892880773,0.922305443831782,0.258428293168221,0.363533729477506,0.356497378384721,0.948110273807448,1.05418608574999,0,0,1.08036656418786,1.16422815404479,0,0.532020700926821,0.891844088010353,0.987294123612726,1.8267896946876,1.40803024838226,0.63549621259146,0,1.15420377059036,0.807322133479528,0.844380948994182,1.90995750405018,1.64140899745061,0.874442509889552,3.70850604021019,0.854354403989263,1.03193433981611,0.370389054739423,0.941842285023455,1.0935538217682,1.83022538565218,0,0.279902904647316,0.138199973804424,0,1.10717597753397,0.813277868507395,0.972048067396211,0.209088296014469,0.436725127492355,0.809186078308924,0.826534557253359,0.785267825952089,1.42576470620972,0.621339313086926,1.12738587736838,0.598066184175915,0.827292452285488,0.583353565032143,0.774958940866387,0.844780627453891,0.704143431874524,1.0416350787516,1.15345278868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| |||
|short_description=p3@Lypla2 | |||
}} | |||
Revision as of 04:07, 14 September 2013
| Short description: | p3@Lypla2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Lypla2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000067567_5end |
| EntrezGene: | Lypla2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 3.19e-10 | 23 |
| neuroblast (sensu Vertebrata) | 3.19e-10 | 23 |
| embryonic cell | 1.54e-07 | 70 |
| neural cell | 2.12e-07 | 43 |
| ectodermal cell | 4.78e-07 | 44 |
| neurectodermal cell | 4.78e-07 | 44 |
| Ontology term | p-value | n |
|---|---|---|
| mucosa | 3.47e-07 | 15 |
| posterior neural tube | 4.23e-07 | 12 |
| chordal neural plate | 4.23e-07 | 12 |
| nervous system | 7.67e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
