Personal tools

UBERON:0001016

From FANTOM5_SSTAR

Jump to: navigation, search

Name:nervous system
Namespace:FANTOM
Definition:"a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
Xrefs:
links:

AAO:0000324
BILA:0000079
BTO:0001484
EFO:0000802
EHDAA2:0001246
EHDAA:826
EMAPA:16469
EV:0100162
FBbt:00005093
FMA:7157
GAID:466
[1]
[ 200px-Nervous_system_diagram.png 200px-Nervous_system_diagram.png]
MA:0000016
MAT:0000026
MESH:A.08
MIAA:0000026
ncithesaurus:Nervous_System
NIF_GrossAnatomy:birnlex_844
OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA
SCTID:278196006
TAO:0000396
VHOG:0000402
WBbt:0005735
XAO:0000177

ZFA:0000396
Synonyms: "nerve net" NARROW [Wikipedia:Nerve_net]
"Nervensystem" RELATED [BTO:0001484]
"systema nervosum" RELATED LATIN [Wikipedia:Nervous_system]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)
develops_from:UBERON:0000924(ectoderm)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system)
part of:UBERON:0000010 (peripheral nervous system),UBERON:0000045 (ganglion),UBERON:0000073 (regional part of nervous system),UBERON:0000121 (perineurium),UBERON:0000122 (neuron projection bundle),UBERON:0001017 (central nervous system),UBERON:0001049 (neural tube),UBERON:0001810 (nerve plexus),CL:0002319 (neural cell),UBERON:0002464 (nerve trunk),UBERON:0003210 (blood-cerebrospinal fluid barrier),UBERON:0003714 (neural tissue),UBERON:0004732 (segmental subdivision of nervous system),UBERON:0005358 (ventricle of nervous system),UBERON:0010133 (neuroendocrine gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001016 (nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.42e-121FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_7733a6929c09531e052cff68045b2882p9@MAP2
1.42e-121FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_7733a6929c09531e052cff68045b2882p9@MAP2
1.35e-120FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_3f90e3d9aac382b99831c02b07873bf4p2@RFX4
1.35e-120FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_3f90e3d9aac382b99831c02b07873bf4p2@RFX4
5.29e-119FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_71763cea5ce6c5e10e64dc4283454b92p3@CTNND2
5.29e-119FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_71763cea5ce6c5e10e64dc4283454b92p3@CTNND2
4.14e-117FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_7b94eae42395a8ae74714c47ad111164p1@RFX4
4.14e-117FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_7b94eae42395a8ae74714c47ad111164p1@RFX4
4.41e-117FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_f64dec3f6abdc3bebd6711d3e97d5e23p5@MAP2
4.41e-117FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_f64dec3f6abdc3bebd6711d3e97d5e23p5@MAP2
1.88e-115FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_f9ed0e02989af0cf7351e02e8f549fc3p6@GPM6B
1.88e-115FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_f9ed0e02989af0cf7351e02e8f549fc3p6@GPM6B
4.82e-115FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_152476be02968aeb0df57001aaeec5f4p2@GFAP
4.82e-115FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_152476be02968aeb0df57001aaeec5f4p2@GFAP
3.39e-114FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_b6bcbfd0c57fd1be55b337b87867ac73p1@SOX2-OT
3.39e-114FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_b6bcbfd0c57fd1be55b337b87867ac73p1@SOX2-OT
3.34e-113FFCP PHASE1:Hg19::chr3:47933982..47934047,-#_4f62ca27c7cfbb3ed5e6b67b45926b76p3@MAP4
3.34e-113FFCP PHASE2:Hg19::chr3:47933982..47934047,-#_4f62ca27c7cfbb3ed5e6b67b45926b76p3@MAP4
4.45e-113FFCP PHASE1:Hg19::chr4:176733632..176733692,-#_0147e6c12a211c1284158e3a724a1948p9@GPM6A
4.45e-113FFCP PHASE2:Hg19::chr4:176733632..176733692,-#_0147e6c12a211c1284158e3a724a1948p9@GPM6A
6.14e-113FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_ea6beaabc29dc4be9e732ca825b78021p8@DST
6.14e-113FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_ea6beaabc29dc4be9e732ca825b78021p8@DST
1.61e-112FFCP PHASE2:Hg19::chr17:42988700..42988738,-#_5f8a8d52087c7e1254ef03aac6fc7a78p3@GFAP
1.61e-112FFCP PHASE1:Hg19::chr17:42988700..42988738,-#_5f8a8d52087c7e1254ef03aac6fc7a78p3@GFAP
1.92e-112FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_1c095a1e12b62bcd67b2fc1fbb1af547p9@PRKACB
1.92e-112FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_1c095a1e12b62bcd67b2fc1fbb1af547p9@PRKACB
1.95e-112FFCP PHASE2:Hg19::chr4:176733558..176733609,-#_df7c5d79c5f66862c30a36ce13fe9ab8p7@GPM6A
1.95e-112FFCP PHASE1:Hg19::chr4:176733558..176733609,-#_df7c5d79c5f66862c30a36ce13fe9ab8p7@GPM6A
4.15e-112FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_21db595175900f9ae3b6ed167ec94e27p4@LINC00461
4.15e-112FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_21db595175900f9ae3b6ed167ec94e27p4@LINC00461
1.92e-111FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_554c668bf3e9f0c04e4c50ea334ae3a8p1@ANKFN1
1.92e-111FFCP PHASE2:Hg19::chr11:35440898..35440916,-#_554c668bf3e9f0c04e4c50ea334ae3a8p2@SLC1A2
1.92e-111FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_554c668bf3e9f0c04e4c50ea334ae3a8p1@ANKFN1
1.92e-111FFCP PHASE1:Hg19::chr11:35440898..35440916,-#_554c668bf3e9f0c04e4c50ea334ae3a8p2@SLC1A2
2.68e-111FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_4da689edf826884cebfac223d072c2a6p7@MAP2
2.68e-111FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_4da689edf826884cebfac223d072c2a6p7@MAP2
4.09e-111FFCP PHASE2:Hg19::chr19:10563567..10563617,+#_c4ac8974493b9e0082c320ca45363637p1@PDE4A
4.09e-111FFCP PHASE1:Hg19::chr19:10563567..10563617,+#_c4ac8974493b9e0082c320ca45363637p1@PDE4A
6.51e-111FFCP PHASE2:Hg19::chr12:99548496..99548518,-#_ebc973f5a3c3cda039dd387b40717be7p3@ANKS1B
6.51e-111FFCP PHASE1:Hg19::chr12:99548496..99548518,-#_ebc973f5a3c3cda039dd387b40717be7p3@ANKS1B
1.23e-110FFCP PHASE2:Hg19::chr11:35441089..35441112,-#_2ea0b6ccbb454cd72203d38db472c0fep1@SLC1A2
1.23e-110FFCP PHASE1:Hg19::chr11:35441089..35441112,-#_2ea0b6ccbb454cd72203d38db472c0fep1@SLC1A2
2.13e-110FFCP PHASE2:Hg19::chr14:58797974..58798011,+#_f8b11a23f60ae1e10f116cb52474e292p3@ARID4A
2.13e-110FFCP PHASE1:Hg19::chr14:58797974..58798011,+#_f8b11a23f60ae1e10f116cb52474e292p3@ARID4A
2.22e-110FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_55bf9179afab99aa0d049cc25372cd76p6@BSCL2
2.22e-110FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_55bf9179afab99aa0d049cc25372cd76p6@BSCL2
2.33e-110FFCP PHASE1:Hg19::chr17:42990725..42990781,-#_3d32680c71c6db59821b0206a2f52436p@chr17:42990725..42990781, -
2.33e-110FFCP PHASE2:Hg19::chr17:42990725..42990781,-#_3d32680c71c6db59821b0206a2f52436p@chr17:42990725..42990781, -
2.49e-110FFCP PHASE2:Hg19::chr16:72459838..72459857,+#_7913cc3abc8af0e27e5713f397b4eccbp1@uc002fch.1
2.49e-110FFCP PHASE1:Hg19::chr16:72459838..72459857,+#_7913cc3abc8af0e27e5713f397b4eccbp1@uc002fch.1
2.95e-110FFCP PHASE2:Hg19::chr4:176733425..176733439,-#_3143a9d8694d57e99c35f6e9ce519f60p8@GPM6A
2.95e-110FFCP PHASE1:Hg19::chr4:176733425..176733439,-#_3143a9d8694d57e99c35f6e9ce519f60p8@GPM6A
3.7e-110FFCP PHASE1:Hg19::chr17:42991115..42991202,-#_8594d42fce2d03aff5675595b098e0a8p@chr17:42991115..42991202, -
3.7e-110FFCP PHASE2:Hg19::chr17:42991115..42991202,-#_8594d42fce2d03aff5675595b098e0a8p@chr17:42991115..42991202, -
3.79e-110FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_f3dc39e6e410746728b81d0f03c996a5p1@LOC100507341
3.79e-110FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_f3dc39e6e410746728b81d0f03c996a5p1@LOC100507341
6.23e-110FFCP PHASE1:Hg19::chr22:50523760..50523787,-#_b44d88a29377d9cdbebada9d75490d2dp4@MLC1
6.23e-110FFCP PHASE2:Hg19::chr22:50523760..50523787,-#_b44d88a29377d9cdbebada9d75490d2dp4@MLC1
6.75e-110FFCP PHASE1:Hg19::chr22:18043185..18043204,+#_c6835e74f9179b49e2b34a00679f58d5p1@SLC25A18
6.75e-110FFCP PHASE2:Hg19::chr22:18043185..18043204,+#_c6835e74f9179b49e2b34a00679f58d5p1@SLC25A18
6.99e-110FFCP PHASE1:Hg19::chr3:181417374..181417407,+#_e3aa26227147764e1110cbdec3fbe372p2@SOX2-OT
6.99e-110FFCP PHASE2:Hg19::chr3:181417374..181417407,+#_e3aa26227147764e1110cbdec3fbe372p2@SOX2-OT
7.56e-110FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_df9b61cbd50b10eaf08aec358dd37de0p2@uc002fch.1
7.56e-110FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_df9b61cbd50b10eaf08aec358dd37de0p2@uc002fch.1
9.95e-110FFCP PHASE1:Hg19::chr1:84630556..84630571,+#_9d8320fdec3aa144e47c6487dc90c1dcp12@PRKACB
9.95e-110FFCP PHASE2:Hg19::chr1:84630556..84630571,+#_9d8320fdec3aa144e47c6487dc90c1dcp12@PRKACB
1.13e-109FFCP PHASE2:Hg19::chr3:42190714..42190787,+#_348debc26ef89f8f8a79f26a5f386f93p3@TRAK1
1.13e-109FFCP PHASE1:Hg19::chr3:42190714..42190787,+#_348debc26ef89f8f8a79f26a5f386f93p3@TRAK1
1.38e-109FFCP PHASE1:Hg19::chr1:160051319..160051366,+#_9c4374caa2719c54eb7c4eea8375f307p1@KCNJ9
1.38e-109FFCP PHASE2:Hg19::chr1:160051319..160051366,+#_9c4374caa2719c54eb7c4eea8375f307p1@KCNJ9
1.97e-109FFCP PHASE1:Hg19::chr4:158141806..158141824,+#_8dee75830d49bef26cb35a7d13765c4ep4@GRIA2
1.97e-109FFCP PHASE2:Hg19::chr4:158141806..158141824,+#_8dee75830d49bef26cb35a7d13765c4ep4@GRIA2
6.44e-109FFCP PHASE2:Hg19::chr12:99548524..99548550,-#_89479cb7fff985f6c3b912aa667dc8f6p2@ANKS1B
6.44e-109FFCP PHASE1:Hg19::chr12:99548524..99548550,-#_89479cb7fff985f6c3b912aa667dc8f6p2@ANKS1B
1.34e-108FFCP PHASE1:Hg19::chr4:176733377..176733424,-#_67017cceb181cb574068e65d7d1701e9p1@GPM6A
1.34e-108FFCP PHASE2:Hg19::chr4:176733377..176733424,-#_67017cceb181cb574068e65d7d1701e9p1@GPM6A
2.1e-108FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_d58fc7fba4623d0cc174bb59107a485dp4@RFX4
2.1e-108FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_d58fc7fba4623d0cc174bb59107a485dp1@uc003ppd.1
2.1e-108FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_d58fc7fba4623d0cc174bb59107a485dp4@RFX4
2.1e-108FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_d58fc7fba4623d0cc174bb59107a485dp1@uc003ppd.1
2.5e-108FFCP PHASE2:Hg19::chr17:76719615..76719624,-#_08e78f29d7963b0d0ee39babba31e9cap9@CYTH1
2.5e-108FFCP PHASE1:Hg19::chr17:76719615..76719624,-#_08e78f29d7963b0d0ee39babba31e9cap9@CYTH1
2.7e-108FFCP PHASE1:Hg19::chr8:27115931..27115942,-#_df47f7493696441b5010e2afe7924fdcp2@STMN4
2.7e-108FFCP PHASE2:Hg19::chr8:27115931..27115942,-#_df47f7493696441b5010e2afe7924fdcp2@STMN4
3.78e-108FFCP PHASE1:Hg19::chr5:87980633..87980649,-#_e137184d598780fc2c91351ed78eebafp5@LINC00461
3.78e-108FFCP PHASE2:Hg19::chr5:87980633..87980649,-#_e137184d598780fc2c91351ed78eebafp5@LINC00461
4.96e-108FFCP PHASE1:Hg19::chr19:19322758..19322773,+#_cf4a35e2ce63653cb98eed61891e7acep1@NCAN
4.96e-108FFCP PHASE2:Hg19::chr19:19322758..19322773,+#_cf4a35e2ce63653cb98eed61891e7acep1@NCAN
6.96e-108FFCP PHASE2:Hg19::chr2:210444345..210444394,+#_375886967f8d9e5ee2ca77639f78779fp3@MAP2
6.96e-108FFCP PHASE1:Hg19::chr2:210444345..210444394,+#_375886967f8d9e5ee2ca77639f78779fp3@MAP2
9.52e-108FFCP PHASE1:Hg19::chr16:72459805..72459824,+#_b770881ba65cd7ad11a5498a8c95848fp4@uc002fch.1
9.52e-108FFCP PHASE2:Hg19::chr16:72459805..72459824,+#_b770881ba65cd7ad11a5498a8c95848fp4@uc002fch.1
3.21e-107FFCP PHASE2:Hg19::chr3:47932759..47932803,-#_4a354701a7a1bf0ac26a5dfc29cbfe49p12@MAP4
3.21e-107FFCP PHASE1:Hg19::chr3:47932759..47932803,-#_4a354701a7a1bf0ac26a5dfc29cbfe49p12@MAP4
3.87e-107FFCP PHASE2:Hg19::chr5:87437585..87437647,+#_1b2b62d0a3c825b8540b21213ddda1aap@chr5:87437585..87437647, +
3.87e-107FFCP PHASE1:Hg19::chr5:87437585..87437647,+#_1b2b62d0a3c825b8540b21213ddda1aap@chr5:87437585..87437647, +
4.4e-107FFCP PHASE2:Hg19::chr2:210444402..210444423,+#_5d26e619834a7ec1863019f6d0627f99p11@MAP2
4.4e-107FFCP PHASE1:Hg19::chr2:210444402..210444423,+#_5d26e619834a7ec1863019f6d0627f99p11@MAP2
4.86e-107FFCP PHASE2:Hg19::chr11:35440579..35440595,-#_349e83e6c91d1fa833d36212fda13c7ap7@SLC1A2
4.86e-107FFCP PHASE1:Hg19::chr11:35440579..35440595,-#_349e83e6c91d1fa833d36212fda13c7ap7@SLC1A2










Property "Property value" (as page type) with input value "UBPROP:0000001 "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from ectoderm (AAO:0000137) CHANGED TO: develops_from ectoderm (UBERON:0000924)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001016&oldid=3277177"