FFCP PHASE1:Mm9::chr4:3866528..3866568,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66433|HGNC=|MCL_coexpression_id=126|UniProt=|association_with_transcript=0bp_to_ENSMUST00000128829_5end|description=CAGE_peak_3_at_Chchd7_5end|id=chr4:3866528..3866568,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000239,2.31e-16,6;CL:0000677,2.31e-16,6;CL:0000584,2.31e-16,6;CL:0002563,4.40e-14,9;CL:0002251,4.40e-14,9;CL:0000075,6.19e-14,7;CL:0000066,2.34e-11,25;CL:0002076,2.52e-10,15;CL:0000682,1.05e-09,3;CL:0000223,1.96e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!6.17e-14!43;UBERON:0005409!6.02e-12!59;UBERON:0000344!6.06e-11!15;UBERON:0001242!2.11e-09!13;UBERON:0000060!2.11e-09!13;UBERON:0001262!2.11e-09!13;UBERON:0004786!2.11e-09!13;UBERON:0004923!6.20e-08!24|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.84e-55,31;UBERON:0005409,9.21e-35,47;UBERON:0000344,2.22e-29,15;UBERON:0001242,1.45e-24,13;UBERON:0001262,1.45e-24,13;UBERON:0004786,1.45e-24,13;UBERON:0004923,2.62e-17,24;UBERON:0001007,2.12e-14,116;UBERON:0001555,2.12e-14,116;UBERON:0007026,2.12e-14,116;UBERON:0003350,4.40e-14,9;UBERON:0004808,4.40e-14,9;UBERON:0001277,4.40e-14,9;UBERON:0004119,4.68e-14,118;UBERON:0000925,4.68e-14,118;UBERON:0006595,4.68e-14,118;UBERON:0004921,3.21e-12,114;UBERON:0002108,3.70e-12,4;UBERON:0000485,2.39e-11,11;UBERON:0000331,8.64e-10,3;UBERON:0002116,8.64e-10,3;UBERON:0001204,8.64e-10,3;UBERON:0001168,8.64e-10,3|phase1_expression=0.160148847104794,16.0528687514106,17.7449703361919,18.1478526784098,22.0394121176393,1.17515490338323,2.56973904655078,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0,0.198581902401771,0,8.31960598525715,7.34109699414944,29.285830169866,22.830385796431,13.7901588918969,50.5462295753955,30.9997059604715,9.97787297948871,0,0,0,0,1.16364251750945,0.204169356262369,0,0,0.523523743973798,0,0,0,0,0.101376931219515,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182975287204819,0,0,0.56276261003168,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,1.28326477414318,0,0,0,0.253359865475099,0.505524445014783,3.53970027129086,0,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,20.9474785271045,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,0.210441855886474,0,0,0,0,0.204109497453984,0.2562274405697,0,0.258703370739016,0,0,0,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0.284163499395593,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0.329119699826961,0,0,0,0,0,0,0,24.4509899408011,18.2470890997846,0.426576501070468,0,0,1.61346819698674,3.11329261382818,4.56541502670142,18.506633400236,2.79988223030818,2.26201687920243,1.59165177632921,1.55971269695296,16.178749355776,15.561939590978,10.7536287557358,0,0,0,0.610953983535943,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0.25462585178142,0.575392274901621,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0,0,0.214337035031592,0,0,0,0.304464949114599,0.23467170806371,0.21183207086382,0,0,0,0,0.119372344003136,0.328281799490123,8.16146342563582,0.18542530201051,0,0,0,0,0.136694227721025,0,0.169978429993855,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.518459893167171,0,0,0,0.165458490457098,0,0,0.168956125490778,0,0.13020438484395,0.314578033277133,0.241584120826006,0,0,0,0.102710957164827,0,0,0,0.120195449519969,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0.256100609619477,0.459483751644906,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0.342869252385415,0,0,0.290692833264657,0.188218760830661,0.423073039458382,0,0,0.271608227691724,0,0.237270036248348,0.0985044823755635,0.409231043169689,0.154936841185966,0.578719832943424,0,0.233931608445408,0.429742108096597,0,0,0|short_description=p3@Chchd7}} | ||
|EntrezGene=66433 | |||
|HGNC= | |||
|MCL_coexpression_id=126 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000128829_5end | |||
|description=CAGE_peak_3_at_Chchd7_5end | |||
|id=chr4:3866528..3866568,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.31e-16,6;CL:0000677,2.31e-16,6;CL:0000584,2.31e-16,6;CL:0002563,4.40e-14,9;CL:0002251,4.40e-14,9;CL:0000075,6.19e-14,7;CL:0000066,2.34e-11,25;CL:0002076,2.52e-10,15;CL:0000682,1.05e-09,3;CL:0000223,1.96e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.17e-14!43;UBERON:0005409!6.02e-12!59;UBERON:0000344!6.06e-11!15;UBERON:0001242!2.11e-09!13;UBERON:0000060!2.11e-09!13;UBERON:0001262!2.11e-09!13;UBERON:0004786!2.11e-09!13;UBERON:0004923!6.20e-08!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.84e-55,31;UBERON:0005409,9.21e-35,47;UBERON:0000344,2.22e-29,15;UBERON:0001242,1.45e-24,13;UBERON:0001262,1.45e-24,13;UBERON:0004786,1.45e-24,13;UBERON:0004923,2.62e-17,24;UBERON:0001007,2.12e-14,116;UBERON:0001555,2.12e-14,116;UBERON:0007026,2.12e-14,116;UBERON:0003350,4.40e-14,9;UBERON:0004808,4.40e-14,9;UBERON:0001277,4.40e-14,9;UBERON:0004119,4.68e-14,118;UBERON:0000925,4.68e-14,118;UBERON:0006595,4.68e-14,118;UBERON:0004921,3.21e-12,114;UBERON:0002108,3.70e-12,4;UBERON:0000485,2.39e-11,11;UBERON:0000331,8.64e-10,3;UBERON:0002116,8.64e-10,3;UBERON:0001204,8.64e-10,3;UBERON:0001168,8.64e-10,3 | |||
|phase1_expression=0.160148847104794,16.0528687514106,17.7449703361919,18.1478526784098,22.0394121176393,1.17515490338323,2.56973904655078,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0,0.198581902401771,0,8.31960598525715,7.34109699414944,29.285830169866,22.830385796431,13.7901588918969,50.5462295753955,30.9997059604715,9.97787297948871,0,0,0,0,1.16364251750945,0.204169356262369,0,0,0.523523743973798,0,0,0,0,0.101376931219515,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182975287204819,0,0,0.56276261003168,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,1.28326477414318,0,0,0,0.253359865475099,0.505524445014783,3.53970027129086,0,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,20.9474785271045,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,0.210441855886474,0,0,0,0,0.204109497453984,0.2562274405697,0,0.258703370739016,0,0,0,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0.284163499395593,0,0,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0.329119699826961,0,0,0,0,0,0,0,24.4509899408011,18.2470890997846,0.426576501070468,0,0,1.61346819698674,3.11329261382818,4.56541502670142,18.506633400236,2.79988223030818,2.26201687920243,1.59165177632921,1.55971269695296,16.178749355776,15.561939590978,10.7536287557358,0,0,0,0.610953983535943,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0.25462585178142,0.575392274901621,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0,0,0.214337035031592,0,0,0,0.304464949114599,0.23467170806371,0.21183207086382,0,0,0,0,0.119372344003136,0.328281799490123,8.16146342563582,0.18542530201051,0,0,0,0,0.136694227721025,0,0.169978429993855,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.518459893167171,0,0,0,0.165458490457098,0,0,0.168956125490778,0,0.13020438484395,0.314578033277133,0.241584120826006,0,0,0,0.102710957164827,0,0,0,0.120195449519969,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0.256100609619477,0.459483751644906,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0.342869252385415,0,0,0.290692833264657,0.188218760830661,0.423073039458382,0,0,0.271608227691724,0,0.237270036248348,0.0985044823755635,0.409231043169689,0.154936841185966,0.578719832943424,0,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p3@Chchd7 | |||
}} |
Revision as of 04:54, 14 September 2013
Short description: | p3@Chchd7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Chchd7_5end |
Coexpression cluster: | MCL_coexpression_mm9:126 |
Association with transcript: | 0bp_to_ENSMUST00000128829_5end |
EntrezGene: | Chchd7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.31e-16 | 6 |
gut absorptive cell | 2.31e-16 | 6 |
enterocyte | 2.31e-16 | 6 |
intestinal epithelial cell | 4.40e-14 | 9 |
epithelial cell of alimentary canal | 4.40e-14 | 9 |
columnar/cuboidal epithelial cell | 6.19e-14 | 7 |
epithelial cell | 2.34e-11 | 25 |
endo-epithelial cell | 2.52e-10 | 15 |
M cell of gut | 1.05e-09 | 3 |
endodermal cell | 1.96e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.84e-55 | 31 |
gastrointestinal system | 9.21e-35 | 47 |
mucosa | 2.22e-29 | 15 |
intestinal mucosa | 1.45e-24 | 13 |
wall of intestine | 1.45e-24 | 13 |
gastrointestinal system mucosa | 1.45e-24 | 13 |
organ component layer | 2.62e-17 | 24 |
digestive system | 2.12e-14 | 116 |
digestive tract | 2.12e-14 | 116 |
primitive gut | 2.12e-14 | 116 |
epithelium of mucosa | 4.40e-14 | 9 |
gastrointestinal system epithelium | 4.40e-14 | 9 |
intestinal epithelium | 4.40e-14 | 9 |
endoderm-derived structure | 4.68e-14 | 118 |
endoderm | 4.68e-14 | 118 |
presumptive endoderm | 4.68e-14 | 118 |
subdivision of digestive tract | 3.21e-12 | 114 |
small intestine | 3.70e-12 | 4 |
simple columnar epithelium | 2.39e-11 | 11 |
ileal mucosa | 8.64e-10 | 3 |
ileum | 8.64e-10 | 3 |
mucosa of small intestine | 8.64e-10 | 3 |
wall of small intestine | 8.64e-10 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.