FFCP PHASE1:Mm9::chr6:78417872..78417919,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78417872..78417919,-|id=chr6:78417872..78417919,-|ontology_enrichment_celltype=CL:0000239!1.55e-13!6;CL:0000677!1.55e-13!6;CL:0000212!1.55e-13!6;CL:0000584!1.55e-13!6;CL:0002076!1.83e-12!15;CL:0000066!4.18e-12!25;CL:0000075!1.79e-11!7;CL:0002563!2.18e-11!9;CL:0002251!2.18e-11!9;CL:0000223!8.24e-09!20;CL:0000473!5.37e-08!3;CL:0000627!5.37e-08!3;CL:0000682!5.37e-08!3|ontology_enrichment_celltype_v019_2=CL:0000239,2.35e-25,6;CL:0000677,2.35e-25,6;CL:0000584,2.35e-25,6;CL:0000075,1.12e-21,7;CL:0002563,9.09e-17,9;CL:0002251,9.09e-17,9;CL:0000682,2.43e-14,3;CL:0000066,6.37e-13,25;CL:0002076,7.16e-10,15;CL:0000223,2.83e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.87e-23!15;UBERON:0001242!4.29e-19!13;UBERON:0000060!4.29e-19!13;UBERON:0001262!4.29e-19!13;UBERON:0004786!4.29e-19!13;UBERON:0000160!1.48e-17!43;UBERON:0004923!3.72e-13!24;UBERON:0001007!4.93e-13!128;UBERON:0001555!4.93e-13!128;UBERON:0007026!4.93e-13!128;UBERON:0004119!1.05e-12!130;UBERON:0000925!1.05e-12!130;UBERON:0006595!1.05e-12!130;UBERON:0003350!2.18e-11!9;UBERON:0004808!2.18e-11!9;UBERON:0001277!2.18e-11!9;UBERON:0005409!2.52e-11!59;UBERON:0004921!3.45e-11!126;UBERON:0004185!3.45e-11!126;UBERON:0000485!4.26e-09!11;UBERON:0000331!7.28e-08!3;UBERON:0002116!7.28e-08!3;UBERON:0001204!7.28e-08!3;UBERON:0001168!7.28e-08!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.98e-33,15;UBERON:0001242,7.15e-26,13;UBERON:0001262,7.15e-26,13;UBERON:0004786,7.15e-26,13;UBERON:0000160,3.00e-21,31;UBERON:0004923,3.88e-20,24;UBERON:0003350,9.09e-17,9;UBERON:0004808,9.09e-17,9;UBERON:0001277,9.09e-17,9;UBERON:0000331,4.44e-14,3;UBERON:0002116,4.44e-14,3;UBERON:0001204,4.44e-14,3;UBERON:0001168,4.44e-14,3;UBERON:0000485,1.23e-13,11;UBERON:0005409,2.82e-13,47;UBERON:0002108,1.10e-10,4;UBERON:0001962,1.64e-09,2;UBERON:0001961,1.64e-09,2;UBERON:0001744,1.64e-09,2|phase1_expression=0,13.6100408979351,22.7499619694768,3.93203474698879,11.0197060588196,4.36486106970913,9.81173090501208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79958325363737,10.5528269290898,31.5827580263261,25.8457197695445,19.1769397090441,26.413255304436,6.80481350351813,61.86281247283,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,2.39786147410026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.19645398750929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,9.52022039988759,0,0,0,0,0,0,6.16887780007865,0,0,0,0,2.69645822596266,0.648414149624083,0.995706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.518054945597687,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,2.10837217149998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0.120195449519969,0.295379054349154,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr6:78417872..78417919,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78417872..78417919,- | |||
|id=chr6:78417872..78417919,- | |||
|ontology_enrichment_celltype=CL:0000239!1.55e-13!6;CL:0000677!1.55e-13!6;CL:0000212!1.55e-13!6;CL:0000584!1.55e-13!6;CL:0002076!1.83e-12!15;CL:0000066!4.18e-12!25;CL:0000075!1.79e-11!7;CL:0002563!2.18e-11!9;CL:0002251!2.18e-11!9;CL:0000223!8.24e-09!20;CL:0000473!5.37e-08!3;CL:0000627!5.37e-08!3;CL:0000682!5.37e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.35e-25,6;CL:0000677,2.35e-25,6;CL:0000584,2.35e-25,6;CL:0000075,1.12e-21,7;CL:0002563,9.09e-17,9;CL:0002251,9.09e-17,9;CL:0000682,2.43e-14,3;CL:0000066,6.37e-13,25;CL:0002076,7.16e-10,15;CL:0000223,2.83e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.87e-23!15;UBERON:0001242!4.29e-19!13;UBERON:0000060!4.29e-19!13;UBERON:0001262!4.29e-19!13;UBERON:0004786!4.29e-19!13;UBERON:0000160!1.48e-17!43;UBERON:0004923!3.72e-13!24;UBERON:0001007!4.93e-13!128;UBERON:0001555!4.93e-13!128;UBERON:0007026!4.93e-13!128;UBERON:0004119!1.05e-12!130;UBERON:0000925!1.05e-12!130;UBERON:0006595!1.05e-12!130;UBERON:0003350!2.18e-11!9;UBERON:0004808!2.18e-11!9;UBERON:0001277!2.18e-11!9;UBERON:0005409!2.52e-11!59;UBERON:0004921!3.45e-11!126;UBERON:0004185!3.45e-11!126;UBERON:0000485!4.26e-09!11;UBERON:0000331!7.28e-08!3;UBERON:0002116!7.28e-08!3;UBERON:0001204!7.28e-08!3;UBERON:0001168!7.28e-08!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.98e-33,15;UBERON:0001242,7.15e-26,13;UBERON:0001262,7.15e-26,13;UBERON:0004786,7.15e-26,13;UBERON:0000160,3.00e-21,31;UBERON:0004923,3.88e-20,24;UBERON:0003350,9.09e-17,9;UBERON:0004808,9.09e-17,9;UBERON:0001277,9.09e-17,9;UBERON:0000331,4.44e-14,3;UBERON:0002116,4.44e-14,3;UBERON:0001204,4.44e-14,3;UBERON:0001168,4.44e-14,3;UBERON:0000485,1.23e-13,11;UBERON:0005409,2.82e-13,47;UBERON:0002108,1.10e-10,4;UBERON:0001962,1.64e-09,2;UBERON:0001961,1.64e-09,2;UBERON:0001744,1.64e-09,2 | |||
|phase1_expression=0,13.6100408979351,22.7499619694768,3.93203474698879,11.0197060588196,4.36486106970913,9.81173090501208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79958325363737,10.5528269290898,31.5827580263261,25.8457197695445,19.1769397090441,26.413255304436,6.80481350351813,61.86281247283,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,2.39786147410026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.19645398750929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,9.52022039988759,0,0,0,0,0,0,6.16887780007865,0,0,0,0,2.69645822596266,0.648414149624083,0.995706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.518054945597687,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,2.10837217149998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0.120195449519969,0.295379054349154,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr6:78417872..78417919,- | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p@chr6:78417872..78417919, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78417872..78417919, - |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.35e-25 | 6 |
gut absorptive cell | 2.35e-25 | 6 |
enterocyte | 2.35e-25 | 6 |
columnar/cuboidal epithelial cell | 1.12e-21 | 7 |
intestinal epithelial cell | 9.09e-17 | 9 |
epithelial cell of alimentary canal | 9.09e-17 | 9 |
M cell of gut | 2.43e-14 | 3 |
epithelial cell | 6.37e-13 | 25 |
endo-epithelial cell | 7.16e-10 | 15 |
endodermal cell | 2.83e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.98e-33 | 15 |
intestinal mucosa | 7.15e-26 | 13 |
wall of intestine | 7.15e-26 | 13 |
gastrointestinal system mucosa | 7.15e-26 | 13 |
intestine | 3.00e-21 | 31 |
organ component layer | 3.88e-20 | 24 |
epithelium of mucosa | 9.09e-17 | 9 |
gastrointestinal system epithelium | 9.09e-17 | 9 |
intestinal epithelium | 9.09e-17 | 9 |
ileal mucosa | 4.44e-14 | 3 |
ileum | 4.44e-14 | 3 |
mucosa of small intestine | 4.44e-14 | 3 |
wall of small intestine | 4.44e-14 | 3 |
simple columnar epithelium | 1.23e-13 | 11 |
gastrointestinal system | 2.82e-13 | 47 |
small intestine | 1.10e-10 | 4 |
gut-associated lymphoid tissue | 1.64e-09 | 2 |
mucosa-associated lymphoid tissue | 1.64e-09 | 2 |
lymphoid tissue | 1.64e-09 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.