FFCP PHASE1:Mm9::chr7:135036978..135036995,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=200|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:135036978..135036995,-|id=chr7:135036978..135036995,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000219,1.09e-08,54;CL:0000557,1.07e-07,7;CL:0002320,4.25e-07,46;CL:0000134,4.25e-07,46;CL:0002194,7.41e-07,4;CL:0000766,7.41e-07,4;CL:0000234,7.41e-07,4;CL:0000576,7.41e-07,4;CL:0000235,7.41e-07,4;CL:0000864,7.41e-07,4;CL:0002009,7.41e-07,4;CL:0000040,7.41e-07,4;CL:0000559,7.41e-07,4|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002365!1.01e-07!25;UBERON:0002330!1.01e-07!25;UBERON:0002107!3.25e-07!22;UBERON:0007499!3.25e-07!22;UBERON:0006925!3.25e-07!22;UBERON:0009497!3.25e-07!22;UBERON:0000015!3.25e-07!22;UBERON:0002423!3.25e-07!22;UBERON:0006235!3.25e-07!22;UBERON:0008835!3.25e-07!22;UBERON:0003894!3.25e-07!22;UBERON:0004161!3.25e-07!22;UBERON:0008836!3.25e-07!22;UBERON:0005256!9.92e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.10e-12,22;UBERON:0007499,3.10e-12,22;UBERON:0006925,3.10e-12,22;UBERON:0009497,3.10e-12,22;UBERON:0000015,3.10e-12,22;UBERON:0002423,3.10e-12,22;UBERON:0006235,3.10e-12,22;UBERON:0008835,3.10e-12,22;UBERON:0003894,3.10e-12,22;UBERON:0004161,3.10e-12,22;UBERON:0008836,3.10e-12,22;UBERON:0002365,1.17e-11,25;UBERON:0002330,1.17e-11,25;UBERON:0009854,1.61e-11,23;UBERON:0009856,1.61e-11,23;UBERON:0005256,2.92e-08,45;UBERON:0002384,4.25e-07,46;UBERON:0003914,6.49e-07,47|phase1_expression=0.160148847104794,0,0,0.90739263392049,0,0.16787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0,0.171217968225505,0,0.171200729931206,0.174840804837995,0.333109761815663,0.202475267389826,0.699561878128147,0,0.548457734422955,0,0.510259740906419,0,0.261199789138935,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.950117097281869,0.504060259519861,0,0,0.61506478758457,0,0.866554859253824,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.755380907853464,0.608261587317087,0.367093504323363,2.34717403304412,1.30815093828268,0.439372365468944,1.94429899074283,0.979904951377538,1.43752564364972,0.335565212115473,0.725362142011344,0,2.82985379639542,2.29226751951005,4.12537673821954,0.404632921719196,1.05798195854407,0,3.04960078862219,2.66788438833342,6.74924787961049,14.8329954385046,6.3943210345149,3.29560121570245,3.84218305321555,0.207379224616955,0.675029691658453,0.210324961351382,0.856952953211411,2.20868540951614,0.122490799214954,0.383381884072945,0,1.10115880999389,0.255374676170375,0.307213066512487,0.131886287730194,0.548925861614458,0,2.51264699101243,2.25105044012672,1.37518422999129,0.883885756421003,0.284743361598206,0.186399445825301,0.151452386666368,0.226714680320357,0.869593466105033,6.0229671388697,6.11974200336975,9.17495425784289,11.0461990966104,5.82434953226536,1.26399978118577,0.852151612890289,1.81850203222008,0.35333957451034,0.281686839553361,2.56652954828636,0,0,0.865964164044856,0.506719730950197,1.51657333504435,1.1418387971906,0,0.148442139064825,1.04091196059682,0.913396434936424,0.691846491768175,0.753613202763113,0.23517741427141,0.376999773989026,0.741584903203122,0.722996784599558,0,0.323533699894818,0,0,0,0.292780797011547,0,0,3.35482348616577,0.599902730993408,0.381210681219194,0.149790639404823,0,0,0.173824320192276,0,0,0.162241263067758,0.81471491080253,0.622034853050465,1.51633655060205,0.841767423545896,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.340182495756639,0.384341160854549,0.0937017245597288,0,0.215567992932842,0.189106080167819,0.175951124163949,0.876782929710299,1.11218899690239,0,0.205782136407943,1.19420560091096,0,1.80143534980301,1.98914449576915,0.621377317606506,0.234526059981096,0.36012412292203,0.710234206755631,0,0,0.465067889500816,0,0.467061369468678,0,0.492502392237286,0.162137619091711,0,0.439100230582101,0,0.210289948564127,0.205809224758569,0.330418782983798,0,0.426576501070468,0.464473343720877,0.902072229254653,0.201683524623343,0.667134131534611,0.190225626112559,0,0.494096864172033,0.502670417600539,1.1937388322469,0.19496408711912,0,0,0.398282546508734,0.379335801906163,0.571242563048644,0,0.814605311381257,0.581857461502877,0.140271639780637,0.252946148497029,0.738050739898011,0.31399745568275,0.123397163921801,1.77871576252289,0.166845105716094,0,0.224862112384854,0.405720242777006,0.482354319504834,1.2731292589071,2.87696137450811,1.62135226775035,2.47105271869273,18.6898668485561,1.11642284300551,1.87222603868736,1.51547326768267,1.25578189465339,0.964887042726734,0.739012760666419,0,0.325929952884052,0,0.704070744865506,0.335012514883631,0,0.195133647857799,0.315270288212382,0.44292937929755,0,0,0.518054945597687,0.433947175744535,4.52373851817817,1.63171705145613,0.491764273019036,0.827810238914197,0.321101179975584,0.234423373184406,0.327869890753351,0,0.631016438832513,0.780877488593277,0.861693590931196,0.716906393857656,0.891194696329576,0.849229592366497,0,1.16902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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=200 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:135036978..135036995,- | |||
|id=chr7:135036978..135036995,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,1.09e-08,54;CL:0000557,1.07e-07,7;CL:0002320,4.25e-07,46;CL:0000134,4.25e-07,46;CL:0002194,7.41e-07,4;CL:0000766,7.41e-07,4;CL:0000234,7.41e-07,4;CL:0000576,7.41e-07,4;CL:0000235,7.41e-07,4;CL:0000864,7.41e-07,4;CL:0002009,7.41e-07,4;CL:0000040,7.41e-07,4;CL:0000559,7.41e-07,4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002365!1.01e-07!25;UBERON:0002330!1.01e-07!25;UBERON:0002107!3.25e-07!22;UBERON:0007499!3.25e-07!22;UBERON:0006925!3.25e-07!22;UBERON:0009497!3.25e-07!22;UBERON:0000015!3.25e-07!22;UBERON:0002423!3.25e-07!22;UBERON:0006235!3.25e-07!22;UBERON:0008835!3.25e-07!22;UBERON:0003894!3.25e-07!22;UBERON:0004161!3.25e-07!22;UBERON:0008836!3.25e-07!22;UBERON:0005256!9.92e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.10e-12,22;UBERON:0007499,3.10e-12,22;UBERON:0006925,3.10e-12,22;UBERON:0009497,3.10e-12,22;UBERON:0000015,3.10e-12,22;UBERON:0002423,3.10e-12,22;UBERON:0006235,3.10e-12,22;UBERON:0008835,3.10e-12,22;UBERON:0003894,3.10e-12,22;UBERON:0004161,3.10e-12,22;UBERON:0008836,3.10e-12,22;UBERON:0002365,1.17e-11,25;UBERON:0002330,1.17e-11,25;UBERON:0009854,1.61e-11,23;UBERON:0009856,1.61e-11,23;UBERON:0005256,2.92e-08,45;UBERON:0002384,4.25e-07,46;UBERON:0003914,6.49e-07,47 | |||
|phase1_expression=0.160148847104794,0,0,0.90739263392049,0,0.16787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0,0.171217968225505,0,0.171200729931206,0.174840804837995,0.333109761815663,0.202475267389826,0.699561878128147,0,0.548457734422955,0,0.510259740906419,0,0.261199789138935,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.950117097281869,0.504060259519861,0,0,0.61506478758457,0,0.866554859253824,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.755380907853464,0.608261587317087,0.367093504323363,2.34717403304412,1.30815093828268,0.439372365468944,1.94429899074283,0.979904951377538,1.43752564364972,0.335565212115473,0.725362142011344,0,2.82985379639542,2.29226751951005,4.12537673821954,0.404632921719196,1.05798195854407,0,3.04960078862219,2.66788438833342,6.74924787961049,14.8329954385046,6.3943210345149,3.29560121570245,3.84218305321555,0.207379224616955,0.675029691658453,0.210324961351382,0.856952953211411,2.20868540951614,0.122490799214954,0.383381884072945,0,1.10115880999389,0.255374676170375,0.307213066512487,0.131886287730194,0.548925861614458,0,2.51264699101243,2.25105044012672,1.37518422999129,0.883885756421003,0.284743361598206,0.186399445825301,0.151452386666368,0.226714680320357,0.869593466105033,6.0229671388697,6.11974200336975,9.17495425784289,11.0461990966104,5.82434953226536,1.26399978118577,0.852151612890289,1.81850203222008,0.35333957451034,0.281686839553361,2.56652954828636,0,0,0.865964164044856,0.506719730950197,1.51657333504435,1.1418387971906,0,0.148442139064825,1.04091196059682,0.913396434936424,0.691846491768175,0.753613202763113,0.23517741427141,0.376999773989026,0.741584903203122,0.722996784599558,0,0.323533699894818,0,0,0,0.292780797011547,0,0,3.35482348616577,0.599902730993408,0.381210681219194,0.149790639404823,0,0,0.173824320192276,0,0,0.162241263067758,0.81471491080253,0.622034853050465,1.51633655060205,0.841767423545896,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.340182495756639,0.384341160854549,0.0937017245597288,0,0.215567992932842,0.189106080167819,0.175951124163949,0.876782929710299,1.11218899690239,0,0.205782136407943,1.19420560091096,0,1.80143534980301,1.98914449576915,0.621377317606506,0.234526059981096,0.36012412292203,0.710234206755631,0,0,0.465067889500816,0,0.467061369468678,0,0.492502392237286,0.162137619091711,0,0.439100230582101,0,0.210289948564127,0.205809224758569,0.330418782983798,0,0.426576501070468,0.464473343720877,0.902072229254653,0.201683524623343,0.667134131534611,0.190225626112559,0,0.494096864172033,0.502670417600539,1.1937388322469,0.19496408711912,0,0,0.398282546508734,0.379335801906163,0.571242563048644,0,0.814605311381257,0.581857461502877,0.140271639780637,0.252946148497029,0.738050739898011,0.31399745568275,0.123397163921801,1.77871576252289,0.166845105716094,0,0.224862112384854,0.405720242777006,0.482354319504834,1.2731292589071,2.87696137450811,1.62135226775035,2.47105271869273,18.6898668485561,1.11642284300551,1.87222603868736,1.51547326768267,1.25578189465339,0.964887042726734,0.739012760666419,0,0.325929952884052,0,0.704070744865506,0.335012514883631,0,0.195133647857799,0.315270288212382,0.44292937929755,0,0,0.518054945597687,0.433947175744535,4.52373851817817,1.63171705145613,0.491764273019036,0.827810238914197,0.321101179975584,0.234423373184406,0.327869890753351,0,0.631016438832513,0.780877488593277,0.861693590931196,0.716906393857656,0.891194696329576,0.849229592366497,0,1.16902343164525,0,0,0,1.6025904330053,0.651547837414304,0,1.32745138339963,0.485561272309963,0.302323556964751,1.50884063804718,1.77181135728464,0.922305443831782,0,0.727067458955011,0.712994756769443,1.26414703174326,1.05418608574999,0,0.680879211507576,0,0.388076051348264,0,0.709360934569094,0.713475270408282,0.493647061806363,1.522324745573,0.23467170806371,1.27099242518292,0.220528398054962,0.32977250588296,0,0.180938774784468,0.238744688006273,0.328281799490123,0.582961673259701,0.18542530201051,0.170870880797853,0.412773735926445,0.740778109478847,0.188368457004691,0.136694227721025,0.228778173206523,0.509935289981566,0.139951452323658,0.138199973804424,1.90934123603023,0.474503990371703,0.609958401380546,0.540026704109006,0.209088296014469,0,0,0.247960367176008,0,0,1.24267862617385,0,1.19613236835183,0.330916980914195,0.388902376688095,0.645799117388655,1.01373675294467,0.58678619322877,0.2604087696879,0.524296722128554,0.241584120826006,0,0,0,0.616265742988964,0.129920822977795,0.358053391334963,0,0.120195449519969,0.147689527174577,0.302899349844443,0.0762068066549998,0,0,0,0,0.226730383615211,0.443971906748129,0.448569283047378,0.671538465456314,0.965947970160952,0.563047426353546,0.36630324853453,0.643105137237198,0.501572104035363,0.564751842617067,0.460325236507177,1.14579102687879,0.171853182343688,2.74033007908257,0.755393897389701,0.675022500231806,1.35096360967266,0.453142408984205,0.51776031175182,0,0.399024873401031,0.170733605754134,0.972426868273176,0,0.183843508450014,0.8889869112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| |||
|short_description=p@chr7:135036978..135036995,- | |||
}} | |||
Revision as of 11:58, 14 September 2013
| Short description: | p@chr7:135036978..135036995, - |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr7:135036978..135036995, - |
| Coexpression cluster: | MCL_coexpression_mm9:200 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| motile cell | 1.09e-08 | 54 |
| granulocyte monocyte progenitor cell | 1.07e-07 | 7 |
| connective tissue cell | 4.25e-07 | 46 |
| mesenchymal cell | 4.25e-07 | 46 |
| monopoietic cell | 7.41e-07 | 4 |
| myeloid leukocyte | 7.41e-07 | 4 |
| phagocyte | 7.41e-07 | 4 |
| monocyte | 7.41e-07 | 4 |
| macrophage | 7.41e-07 | 4 |
| tissue-resident macrophage | 7.41e-07 | 4 |
| macrophage dendritic cell progenitor | 7.41e-07 | 4 |
| monoblast | 7.41e-07 | 4 |
| promonocyte | 7.41e-07 | 4 |
| Ontology term | p-value | n |
|---|---|---|
| liver | 3.10e-12 | 22 |
| epithelial sac | 3.10e-12 | 22 |
| digestive gland | 3.10e-12 | 22 |
| epithelium of foregut-midgut junction | 3.10e-12 | 22 |
| anatomical boundary | 3.10e-12 | 22 |
| hepatobiliary system | 3.10e-12 | 22 |
| foregut-midgut junction | 3.10e-12 | 22 |
| hepatic diverticulum | 3.10e-12 | 22 |
| liver primordium | 3.10e-12 | 22 |
| septum transversum | 3.10e-12 | 22 |
| liver bud | 3.10e-12 | 22 |
| exocrine gland | 1.17e-11 | 25 |
| exocrine system | 1.17e-11 | 25 |
| digestive tract diverticulum | 1.61e-11 | 23 |
| sac | 1.61e-11 | 23 |
| trunk mesenchyme | 2.92e-08 | 45 |
| connective tissue | 4.25e-07 | 46 |
| epithelial tube | 6.49e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
