FFCP PHASE1:Hg19::chr18:13165707..13165731,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C76 | |||
|description=CAGE_peak_at_chr18:13165707..13165731,- | |||
|id=chr18:13165707..13165731,- | |||
|ontology_enrichment_celltype=CL:0000039!3.95e-51!7;CL:0000586!3.95e-51!7;CL:0002322!4.76e-24!5;CL:0000242!1.18e-16!2;CL:0000083!2.07e-08!4;CL:0000148!2.52e-07!10;CL:0000541!2.52e-07!10;CL:0000312!3.55e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.45e-66;2!CL:0000242;1.45e-66;2!CL:0000312;2.08e-27;5!CL:0000240;4.86e-23;6!CL:0000311;4.86e-23;6!CL:0000079;4.86e-23;6!CL:0000237;4.86e-23;6!CL:0002535;5.48e-18;2!CL:0000362;9.73e-16;9!CL:0002159;1.72e-10;14!CL:0002077;1.33e-09;34!CL:0000095;5.54e-08;17!CL:0002322;7.25e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.45e-66,2;CL:0000312,2.08e-27,5;CL:0000240,4.86e-23,6;CL:0000311,4.86e-23,6;CL:0000079,4.86e-23,6;CL:0000237,4.86e-23,6;CL:0000036,4.86e-23,6;CL:0000357,4.86e-23,6;CL:0000114,4.86e-23,6;CL:0002535,5.48e-18,2;CL:0000362,9.73e-16,9;CL:0002159,1.72e-10,14;CL:0002077,1.72e-09,34;CL:0000095,5.54e-08,17;CL:0000123,5.54e-08,17;CL:0002322,7.49e-08,5;CL:0000333,1.19e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000357;4.86e-23;6!CL:0000114;4.86e-23;6 | |||
|ontology_enrichment_disease=DOID:3095!4.14e-26!22;DOID:2994!4.14e-26!22;DOID:0050687!5.90e-12!143;DOID:305!1.22e-09!106;DOID:1799!8.36e-09!1;DOID:10165!8.36e-09!1;DOID:1798!8.36e-09!1;DOID:1793!2.07e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:4362;5.35e-08;5!DOID:3095;5.82e-07;22!DOID:2994;5.82e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.00e-08,106;DOID:4362,5.35e-08,5;DOID:3095,5.74e-07,22;DOID:2994,5.74e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.87e-23!8;UBERON:0003135!1.27e-16!11;UBERON:0000991!3.32e-12!21;UBERON:0009196!3.32e-12!21;UBERON:0009117!3.32e-12!21;UBERON:0005564!3.32e-12!21;UBERON:0004176!1.25e-11!22;UBERON:0002323!3.26e-09!46;UBERON:0003133!8.66e-09!48;UBERON:0004458!1.39e-08!49;UBERON:0003101!3.14e-08!22;UBERON:0000079!3.14e-08!22;UBERON:0005156!6.00e-07!59;UBERON:0000990!6.00e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;5.48e-18;2!UBERON:0004801;5.48e-18;2!UBERON:0001003;7.41e-10;15!UBERON:0007376;7.41e-10;15!UBERON:0000002;7.17e-07;6!UBERON:0001560;7.17e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,5.48e-18,2;UBERON:0004801,5.48e-18,2;UBERON:0001003,7.41e-10,15;UBERON:0007376,7.41e-10,15;UBERON:0007383,7.41e-10,15;UBERON:0000002,7.17e-07,6;UBERON:0001560,7.17e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.69716365721711,0.414644220061482,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.6662163154677,0,0,0,0,0,0,0,0,0,0,0,0,0.7812832832557,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0.69169171316418,0.897576444097721,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74667924645505,10.4343140599794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630832124175395,1.52971800749174,0,0.917899467677836,0.26721740526556,2.11358268930143,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:13165707..13165731,- | |||
}} |
Revision as of 18:39, 20 January 2014
Short description: | p@chr18:13165707..13165731, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:13165707..13165731, - |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.45e-66 | 2 |
keratinocyte | 2.08e-27 | 5 |
stratified squamous epithelial cell | 4.86e-23 | 6 |
keratin accumulating cell | 4.86e-23 | 6 |
stratified epithelial cell | 4.86e-23 | 6 |
keratinizing barrier epithelial cell | 4.86e-23 | 6 |
epithelial fate stem cell | 4.86e-23 | 6 |
stratified epithelial stem cell | 4.86e-23 | 6 |
surface ectodermal cell | 4.86e-23 | 6 |
epithelial cell of cervix | 5.48e-18 | 2 |
epidermal cell | 9.73e-16 | 9 |
general ecto-epithelial cell | 1.72e-10 | 14 |
ecto-epithelial cell | 1.72e-09 | 34 |
neuron associated cell | 5.54e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.54e-08 | 17 |
embryonic stem cell | 7.49e-08 | 5 |
migratory neural crest cell | 1.19e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 5.48e-18 | 2 |
cervix epithelium | 5.48e-18 | 2 |
skin epidermis | 7.41e-10 | 15 |
outer epithelium | 7.41e-10 | 15 |
enveloping layer of ectoderm | 7.41e-10 | 15 |
uterine cervix | 7.17e-07 | 6 |
neck of organ | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.00e-08 | 106 |
cervical cancer | 5.35e-08 | 5 |
germ cell and embryonal cancer | 5.74e-07 | 22 |
germ cell cancer | 5.74e-07 | 22 |