FFCP PHASE1:Hg19::chr19:50528706..50528735,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51231 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18996 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IV63,A6NEG5 | |||
|association_with_transcript=69bp_to_ENST00000316763,ENST00000377011,NM_001025778,NM_016440,uc002prh.1,uc002pri.1,uc002prk.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_VRK3_5end | |||
|id=chr19:50528706..50528735,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10!UBERON:0006215;1.96e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0002037;7.01e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0003135,1.62e-15,11;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0002037,6.78e-08,6;UBERON:0006215,6.78e-08,6 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0.767658796194425,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0,0.300353785683013,0.16072558669708,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0,0,0.587237189370939,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,0.795285947051099,0,0.189069634328136,0.221729397462564,0,12.1155644835384,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.535798369704479,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0.570471821544449,0,0,0,0.280901613404497,0,0,0,0,0.247266929278557,0,0.718618141816238,0.168336113954066,0,0,0,0.30648779579902,0,0.226864366320042,0,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0.0920498986422993,0,0,0.403008392910561,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0.8231480226628,0,0,0,0,0.441463099414651,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0,0.1466765716419,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.256686072559497,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.164254312027618,0,0.232420756919918,0,0.40101294060657,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0.501689773854853,0.764628819135115,0,0,0.877039506583738,0.261435451024901,0.512900250232778,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0,0.372158369359667,0,0.38126038784765,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0.421258456238981,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0.578775534266688,0.655894752046633,0,0.92947049429925,0.563391205064483,0.143411352204052,0,0,0.709522128141196,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284567373393656,0.318852545457645,0,0,0,0,0,0,0.156679895773023,0,0.169291777801603,0.481764225311099,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0.278406173895242,0,0,0,0,0,0.146508179271894,0.849523652246594,0.111443384277478,0.284136146806413,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0,0.246169610922139,0,0.359473404589307,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.361789315876224,1.52581736317083,0.110579259931225,0.591095237907095,0.438770794307945,0,0.139423744278603,0.0769502585037971,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0.332423363800313,0.225595660617181,0.19606253431774,0.167821586975843,0.189753732724185,0.158936578980379,0,0,0,0,0,0.0884575645033392,1.22206028986725,0.296521128680622,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0.207376382794494,0,0,0,0,0,0,0,0,0,0.873633341210151,0.51595809741485,0.19351266257817,0,0,0,0.0882561266915003,0,0,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0,0,0,0.114536596165916,0,0.14405479798815,0.124252535565433,0,0.271808412147228,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0.196854963029498,0.0846733320657845,0,0,0.643012593860077,0,0,0,0,0.242998226632099,0,0.0788057072991982,0.157363764404994,0.316801009558219,0,0,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0.170388021785422,0.226624183040251,0.293104467356165,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0.314108192500469,0.886068179966986,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0.28984205722165,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0.168942440653073,0,0,0,0,0,0.132864840313363,0,0,0.245772908753719,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.169732529954025,0.212574920101683,0.123935764259002,0,0.318004350653419,0.0788617450012534,0,0,0,0.0642292250964595,0,0.319267718114302,0.205116364240755,0,0.345786262321089,0.3229512912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| |||
|short_description=p4@VRK3 | |||
}} |
Revision as of 00:36, 21 January 2014
Short description: | p4@VRK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VRK3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 69bp_to_ENST00000316763, ENST00000377011, NM_001025778, NM_016440, uc002prh.1, uc002pri.1, uc002prk.1_5end |
EntrezGene: | VRK3 |
HGNC: | 18996 |
UniProt: | Q8IV63A6NEG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
male reproductive organ | 1.62e-15 | 11 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
cerebellum | 6.78e-08 | 6 |
rhombic lip | 6.78e-08 | 6 |