FFCP PHASE1:Hg19::chr20:43514320..43514425,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7529 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12849 | |||
|TSSclassifier=strong | |||
|UniProt=P31946,Q4VY19,Q4VY20 | |||
|association_with_transcript=0bp_to_ENST00000372839,ENST00000428262,ENST00000445830,ENST00000479421,NM_003404,NM_139323,uc002xmt.2,uc002xmu.2_5end | |||
|description=CAGE_peak_1_at_YWHAB_5end | |||
|id=chr20:43514320..43514425,+ | |||
|ontology_enrichment_celltype=CL:0000003!4.02e-12!722;CL:0000222!2.44e-10!119;CL:0002194!2.38e-09!63;CL:0000576!2.38e-09!63;CL:0000040!2.38e-09!63;CL:0000559!2.38e-09!63;CL:0000766!5.52e-09!76;CL:0002009!6.56e-09!65;CL:0002371!2.70e-08!591;CL:0000860!1.40e-07!45;CL:0000220!2.08e-07!246;CL:0000548!2.40e-07!679;CL:0000004!2.40e-07!679;CL:0000255!2.40e-07!679;CL:0000144!4.56e-07!625;CL:0002321!5.01e-07!248;CL:0000359!5.66e-07!32;CL:0002057!6.05e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.16e-10,121;CL:0000473,3.12e-09,48;CL:0000234,3.12e-09,48;CL:0002194,7.09e-09,59;CL:0000576,7.09e-09,59;CL:0000040,7.09e-09,59;CL:0000559,7.09e-09,59;CL:0000766,1.66e-08,72;CL:0002009,1.96e-08,61;CL:0002321,4.17e-07,250;CL:0000359,5.66e-07,32;CL:0000860,6.05e-07,42;CL:0002057,6.05e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!4.30e-10!42;UBERON:0003509!4.30e-10!42;UBERON:0004572!4.30e-10!42;UBERON:0000055!3.69e-09!69;UBERON:0001981!3.81e-09!60;UBERON:0007500!3.81e-09!60;UBERON:0004537!3.81e-09!60;UBERON:0006965!3.81e-09!60;UBERON:0002204!2.43e-08!167;UBERON:0003081!3.95e-08!216;UBERON:0002049!4.44e-08!79;UBERON:0007798!4.44e-08!79;UBERON:0004573!1.34e-07!33;UBERON:0004571!1.34e-07!33;UBERON:0000914!2.76e-07!83;UBERON:0002329!2.76e-07!83;UBERON:0003077!2.76e-07!83;UBERON:0003059!2.76e-07!83;UBERON:0007282!2.76e-07!83;UBERON:0009618!2.76e-07!83;UBERON:0007285!2.76e-07!83;UBERON:0004535!4.35e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.23e-07;42!UBERON:0003509;1.23e-07;42!UBERON:0004572;1.23e-07;42!UBERON:0004573;6.97e-07;33!UBERON:0004571;6.97e-07;33!UBERON:0007500;8.45e-07;56!UBERON:0001981;8.45e-07;56!UBERON:0004537;8.45e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.30e-10,42;UBERON:0003509,4.30e-10,42;UBERON:0004572,4.30e-10,42;UBERON:0007500,2.55e-09,59;UBERON:0001981,2.55e-09,59;UBERON:0004537,2.55e-09,59;UBERON:0006965,2.55e-09,59;UBERON:0000055,2.59e-09,68;UBERON:0002049,3.37e-08,78;UBERON:0007798,3.37e-08,78;UBERON:0002204,5.21e-08,167;UBERON:0004573,1.34e-07,33;UBERON:0004571,1.34e-07,33;UBERON:0003081,3.01e-07,203;UBERON:0004535,3.62e-07,109 | |||
|phase1_expression=191.125654992626,184.340551070136,195.362804077016,196.143664772136,147.497161161005,165.74431957907,113.98494517574,179.40844405322,152.532406868706,159.481324789479,152.818455785962,209.485275872835,179.889079151805,176.862118379907,165.698687863958,198.335918203274,192.862248967673,197.183724404591,184.438597942812,133.709469071392,131.988447235032,126.008798034191,138.824453758562,190.939822976673,136.088221320766,138.155437592296,152.132392250749,153.17118043642,209.663159560466,174.258546736135,197.855005597945,148.026817141107,189.458522911519,190.053561225729,116.898005675675,111.176339805164,132.707398579351,152.902732754798,153.617046762129,146.4823377332,167.936605679943,158.7078963493,194.727129131445,170.552134088429,157.196392574545,183.878718380365,210.813136473456,184.203213833778,203.477085678083,233.893914957908,185.20419082054,220.63792048605,184.438939194091,145.879538489945,132.717956862455,189.748278258946,174.659936037021,191.239685262767,238.439352156933,176.831893918928,205.866554507291,206.816765217071,174.131773103685,185.833991232255,273.667312026755,263.266744256689,278.401545301022,206.275154175786,173.653811833927,162.240066994722,238.527404037547,210.654807784887,215.827348234683,315.615397750041,289.354452252424,298.973228494944,293.851699079231,284.585211934654,271.94769269146,288.432896666144,300.960932602223,295.915929098707,239.354892467399,203.163563389513,201.029091373163,121.618113431455,193.391261738394,204.037116183842,184.431519506977,197.48912718882,95.0585658412779,124.494284146639,123.856525912574,80.6245104332058,87.9998443881012,114.835460961934,165.432916665734,120.654304163994,212.180746967493,217.342444007882,219.67160771104,195.06049596271,183.137124703437,226.274637933788,374.149502493043,322.553350513752,302.487915825522,186.629052840309,180.262255717991,164.437904603676,192.615962396736,204.311175443212,208.194334679533,184.068089725723,177.710390468461,222.199621029927,235.680603565182,229.543133582397,256.561967707776,213.438827597145,224.623791580464,242.365271334335,158.706175507973,173.037898280774,254.858682166786,228.963602726564,234.842607119419,156.245225999168,103.231915572434,124.114514127559,221.864248345705,191.82044587524,230.919786689416,171.322158230284,163.4361588673,168.311655032477,140.765612628045,105.599766855672,140.100599037149,160.753813160359,151.075831392177,107.926758210115,164.661470308229,180.572023636017,184.667466989515,186.318818910216,172.845348674525,108.751724683236,165.878524126237,123.323890441416,259.186179206183,231.403106083547,308.607905929151,267.390656530057,177.02876208058,245.68041145248,222.78863432824,183.217482251054,176.460066292608,163.343659029159,194.969389480827,236.444624878457,151.318475679865,245.966600751386,205.776054761967,164.400799770991,197.810377283656,227.587802056794,219.242791576213,223.07742999851,188.514594504389,370.302972995338,507.992146034306,179.234655430582,149.588557460291,223.502853087983,190.934038732662,144.852493478151,170.240823455211,201.843936051231,289.2897784275,158.607233632234,169.298803257473,184.284199391333,194.029278995676,163.617379284171,161.3292588544,182.302073966694,190.105486789665,279.53119255678,188.454786175821,217.606125986896,232.449548112637,235.536002839671,158.627791065052,198.991594045064,163.564711601237,194.832468594257,190.890069403046,181.122111025667,204.087552275812,207.053420163501,205.694846669509,199.486163148612,194.467086050211,232.011261419858,173.374719978213,261.120885634368,152.122411064155,164.652746779115,197.944395683031,156.347461059974,190.338021503397,204.824229336275,211.056515080023,146.329080053178,207.638257998514,177.713377067857,185.020296271022,156.796675114248,140.938808229096,191.630490828972,240.776041080892,259.742586651471,218.196896472668,265.581055330218,107.824756218562,131.469530174913,119.331179326995,111.020989921462,154.168039885009,105.478456772915,197.126410735568,207.766823036302,221.015874163969,148.597736970233,172.529196119031,189.40918686379,182.408634664506,173.527941516107,198.418856945577,179.968420820327,189.104683431544,192.808770669035,173.067332240555,188.910854060678,159.441578198924,137.436938327377,165.864326566554,138.188188702409,97.6013768128098,108.110993834539,96.8895446957503,209.694972221959,290.006738084662,189.239294759274,213.903306261411,261.896085090254,201.359531740497,162.863075033854,207.214082177367,177.828848282808,183.300804372097,155.810464286503,226.598779875136,199.081331462521,231.029770775729,210.040584066996,131.17393006124,141.650216745654,286.350378079643,259.276725774275,228.000202950909,269.953441881918,220.728516453301,233.645360255453,186.281727221924,204.896926652343,189.391043507614,120.20983004661,94.2118243941519,57.8445442358754,53.0361428574418,43.5536395321011,168.967896711462,181.444502140182,159.415728205664,183.047517244295,186.940381734642,221.052490573123,155.775405783665,193.089727242711,153.021984160481,211.067586592694,112.20784927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| |||
|short_description=p1@YWHAB | |||
}} |
Revision as of 11:23, 21 January 2014
Short description: | p1@YWHAB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YWHAB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372839, ENST00000428262, ENST00000445830, ENST00000479421, NM_003404, NM_139323, uc002xmt.2, uc002xmu.2_5end |
EntrezGene: | YWHAB |
HGNC: | 12849 |
UniProt: | P31946Q4VY19Q4VY20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.16e-10 | 121 |
defensive cell | 3.12e-09 | 48 |
phagocyte | 3.12e-09 | 48 |
monopoietic cell | 7.09e-09 | 59 |
monocyte | 7.09e-09 | 59 |
monoblast | 7.09e-09 | 59 |
promonocyte | 7.09e-09 | 59 |
myeloid leukocyte | 1.66e-08 | 72 |
macrophage dendritic cell progenitor | 1.96e-08 | 61 |
embryonic cell | 4.17e-07 | 250 |
vascular associated smooth muscle cell | 5.66e-07 | 32 |
classical monocyte | 6.05e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.05e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
artery | 4.30e-10 | 42 |
arterial blood vessel | 4.30e-10 | 42 |
arterial system | 4.30e-10 | 42 |
epithelial tube open at both ends | 2.55e-09 | 59 |
blood vessel | 2.55e-09 | 59 |
blood vasculature | 2.55e-09 | 59 |
vascular cord | 2.55e-09 | 59 |
vessel | 2.59e-09 | 68 |
vasculature | 3.37e-08 | 78 |
vascular system | 3.37e-08 | 78 |
musculoskeletal system | 5.21e-08 | 167 |
systemic artery | 1.34e-07 | 33 |
systemic arterial system | 1.34e-07 | 33 |
lateral plate mesoderm | 3.01e-07 | 203 |
cardiovascular system | 3.62e-07 | 109 |