FFCP PHASE1:Hg19::chr3:104164216..104164229,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:104164216..104164229,- | |||
|id=chr3:104164216..104164229,- | |||
|ontology_enrichment_celltype=CL:0000066!1.00e-12!254;CL:0002149!5.95e-09!6;CL:0002255!5.95e-09!6;CL:0000243!4.09e-08!15;CL:0000125!4.09e-08!15;CL:0000030!4.09e-08!15;CL:0000339!4.09e-08!15;CL:0002573!5.22e-08!2;CL:0000064!5.82e-08!3;CL:0005012!5.82e-08!3;CL:0000067!5.82e-08!3;CL:0002304!5.82e-08!3;CL:1001319!2.22e-07!1;CL:1000600!2.22e-07!1;CL:0000095!3.12e-07!17;CL:0000123!3.12e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:1001319;6.44e-16;1!CL:1000600;6.44e-16;1!CL:0000243;4.48e-08;15!CL:0000125;4.48e-08;15!CL:0000095;2.80e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,6.44e-16,1;CL:1000600,6.44e-16,1;CL:0000243,4.01e-08,15;CL:0000125,4.01e-08,15;CL:0000030,4.01e-08,15;CL:0000339,4.01e-08,15;CL:0000095,2.54e-07,17;CL:0000123,2.54e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006238;3.58e-12;10!CL:0000339;4.48e-08;15 | |||
|ontology_enrichment_disease=DOID:305!1.50e-25!106;DOID:0050687!3.05e-21!143;DOID:299!9.21e-21!25;DOID:1749!7.65e-19!14;DOID:14566!7.25e-18!239;DOID:162!1.19e-15!235;DOID:3493!1.18e-12!2;DOID:3001!5.95e-09!6;DOID:6193!2.36e-07!1;DOID:3111!5.69e-07!1;DOID:3603!5.69e-07!1;DOID:3112!8.02e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:6193;7.45e-16;1!DOID:3093;3.30e-11;11!DOID:1749;1.09e-09;14!DOID:3350;1.39e-08;2!DOID:3493;1.67e-08;2!DOID:4468;2.48e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,7.46e-16,1;DOID:3093,2.82e-11,11;DOID:305,5.70e-10,106;DOID:1749,1.32e-09,14;DOID:0050687,6.60e-09,143;DOID:162,7.39e-09,235;DOID:14566,1.21e-08,239;DOID:3350,1.39e-08,2;DOID:3493,1.61e-08,2;DOID:4468,2.31e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!4.11e-13!4;UBERON:0004785!4.11e-13!4;UBERON:0000344!1.22e-11!12;UBERON:0003729!1.36e-10!5;UBERON:0001778!5.82e-08!3;UBERON:0001775!5.82e-08!3;UBERON:0004645!2.22e-07!1;UBERON:0001256!2.22e-07!1;UBERON:0001259!2.22e-07!1;UBERON:0000997!4.25e-07!1;UBERON:0005056!4.25e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;6.44e-16;1!UBERON:0001256;6.44e-16;1!UBERON:0001259;6.44e-16;1!UBERON:0000997;2.38e-15;1!UBERON:0005056;2.38e-15;1!UBERON:0004176;2.38e-15;1!UBERON:0001255;1.29e-08;2!UBERON:0001556;1.29e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,6.44e-16,1;UBERON:0001256,6.44e-16,1;UBERON:0001259,6.44e-16,1;UBERON:0000997,3.17e-15,1;UBERON:0005056,3.17e-15,1;UBERON:0001255,1.29e-08,2;UBERON:0001556,1.29e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,1.27390116638691,0,0,4.29965081179041,0,0,0,0,0,0,0,0,0,0,0.64127056201227,0,0,0,0,0,0,0.621262677827163,0,2.58217991539867,1.569042694685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,1.49976489554528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3503982678964,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,0.589848616738702,0.366857197043358,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11989233812105,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0.170426809518315,0,0,0.62041277132864,2.8666168169323,0,0.687051635306701,2.8041122745922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07132363163395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57050398082063,0,0,0.628776414746108,0,0,0,0,0,0 | |||
|short_description=p@chr3:104164216..104164229,- | |||
}} |
Revision as of 20:18, 21 January 2014
Short description: | p@chr3:104164216..104164229, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:104164216..104164229, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 6.44e-16 | 1 |
lower urinary tract cell | 6.44e-16 | 1 |
glial cell (sensu Vertebrata) | 4.01e-08 | 15 |
glial cell | 4.01e-08 | 15 |
glioblast | 4.01e-08 | 15 |
glioblast (sensu Vertebrata) | 4.01e-08 | 15 |
neuron associated cell | 2.54e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.54e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 6.44e-16 | 1 |
wall of urinary bladder | 6.44e-16 | 1 |
mucosa of urinary bladder | 6.44e-16 | 1 |
mammalian vulva | 3.17e-15 | 1 |
external female genitalia | 3.17e-15 | 1 |
urinary bladder | 1.29e-08 | 2 |
lower urinary tract | 1.29e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 7.46e-16 | 1 |
nervous system cancer | 2.82e-11 | 11 |
carcinoma | 5.70e-10 | 106 |
squamous cell carcinoma | 1.32e-09 | 14 |
cell type cancer | 6.60e-09 | 143 |
cancer | 7.39e-09 | 235 |
disease of cellular proliferation | 1.21e-08 | 239 |
mesenchymal cell neoplasm | 1.39e-08 | 2 |
signet ring cell adenocarcinoma | 1.61e-08 | 2 |
clear cell adenocarcinoma | 2.31e-08 | 2 |