FFCP PHASE1:Hg19::chr5:52633861..52633877,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:52633861..52633877,+ | |||
|id=chr5:52633861..52633877,+ | |||
|ontology_enrichment_celltype=CL:0002076!8.50e-26!43;CL:0000223!1.55e-20!59;CL:0002368!1.70e-20!13;CL:0002621!6.03e-17!3;CL:0000066!5.39e-16!254;CL:0000240!5.22e-15!6;CL:0000311!5.22e-15!6;CL:0000079!5.22e-15!6;CL:0000237!5.22e-15!6;CL:0000036!5.22e-15!6;CL:0000357!5.22e-15!6;CL:0000114!5.22e-15!6;CL:0002159!1.10e-14!13;CL:0000076!2.15e-12!62;CL:0002251!7.55e-12!21;CL:0000312!1.03e-10!5;CL:0002202!3.05e-10!9;CL:0002632!3.05e-10!9;CL:0002077!1.63e-09!33;CL:0000220!1.77e-09!246;CL:0002321!2.33e-09!248;CL:0000068!1.13e-08!3;CL:0000069!1.13e-08!3;CL:0000307!1.13e-08!3;CL:0000377!1.13e-08!3;CL:0002328!2.55e-08!3;CL:0002166!4.55e-08!3;CL:0000221!6.48e-07!71;CL:0000362!7.45e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.71e-25;13!CL:0000307;9.93e-19;3!CL:0002076;1.52e-18;42!CL:0002202;7.35e-14;9!CL:0002632;7.35e-14;9!CL:0000312;1.46e-11;5!CL:0000240;8.66e-10;6!CL:0000311;8.66e-10;6!CL:0000079;8.66e-10;6!CL:0000237;8.66e-10;6!CL:0002535;5.01e-08;2!CL:0000362;8.22e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.36e-25,13;CL:0002076,1.44e-24,42;CL:0000068,7.94e-19,3;CL:0000069,7.94e-19,3;CL:0000307,7.94e-19,3;CL:0000377,7.94e-19,3;CL:0000223,1.49e-17,58;CL:0002202,5.90e-14,9;CL:0002632,5.90e-14,9;CL:0000312,1.50e-11,5;CL:0000066,3.03e-10,253;CL:0000076,8.83e-10,63;CL:0000240,8.86e-10,6;CL:0000311,8.86e-10,6;CL:0000079,8.86e-10,6;CL:0000237,8.86e-10,6;CL:0000036,8.86e-10,6;CL:0000357,8.86e-10,6;CL:0000114,8.86e-10,6;CL:0002535,5.37e-08,2;CL:0000362,8.34e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;9.93e-19;3!CL:0000223;5.79e-13;58!CL:0000357;8.66e-10;6!CL:0000114;8.66e-10;6!UBERON:0008814;4.09e-08;2!UBERON:0010056;4.09e-08;2 | |||
|ontology_enrichment_disease=DOID:1749!2.66e-24!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.40e-24;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.14e-23,14 | |||
|ontology_enrichment_uberon=UBERON:0001949!6.03e-17!3;UBERON:0003729!1.25e-10!5;UBERON:0001004!8.63e-09!72;UBERON:0004815!2.55e-08!3;UBERON:0002031!2.55e-08!3;UBERON:0000997!5.26e-07!1;UBERON:0005056!5.26e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000997;1.97e-14;1!UBERON:0005056;1.97e-14;1!UBERON:0004176;1.97e-14;1!UBERON:0003343;2.67e-14;4!UBERON:0004785;2.67e-14;4!UBERON:0000974;7.59e-10;6!UBERON:0003729;8.92e-10;13!UBERON:0003126;1.45e-08;7!UBERON:0001005;1.45e-08;7!UBERON:0007196;1.52e-08;15!UBERON:0001558;1.52e-08;15!UBERON:0006955;5.01e-08;2!UBERON:0004801;5.01e-08;2!UBERON:0001004;1.27e-07;65!UBERON:0000161;7.49e-07;19!UBERON:0000166;7.49e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000997,1.84e-14,1;UBERON:0005056,1.84e-14,1;UBERON:0003343,3.16e-14,4;UBERON:0004785,3.16e-14,4;UBERON:0001004,1.04e-10,74;UBERON:0003729,1.07e-09,13;UBERON:0000065,1.27e-08,54;UBERON:0003126,1.32e-08,7;UBERON:0001005,1.32e-08,7;UBERON:0007196,1.33e-08,15;UBERON:0001558,1.33e-08,15;UBERON:0006955,5.37e-08,2;UBERON:0004801,5.37e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,2.51322431029077,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56537681191024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15699440752685,0.960950336825531,7.52915003718046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36777394539292,1.34060455107157,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17590876897253,2.26353937109047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979156554036111,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10057159113007,3.23471865220947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,3.17605384544123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:52633861..52633877,+ | |||
}} |
Revision as of 05:22, 22 January 2014
Short description: | p@chr5:52633861..52633877, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:52633861..52633877, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.36e-25 | 13 |
endo-epithelial cell | 1.44e-24 | 42 |
duct epithelial cell | 7.94e-19 | 3 |
branched duct epithelial cell | 7.94e-19 | 3 |
tracheal epithelial cell | 7.94e-19 | 3 |
tracheoblast | 7.94e-19 | 3 |
endodermal cell | 1.49e-17 | 58 |
epithelial cell of tracheobronchial tree | 5.90e-14 | 9 |
epithelial cell of lower respiratory tract | 5.90e-14 | 9 |
keratinocyte | 1.50e-11 | 5 |
epithelial cell | 3.03e-10 | 253 |
squamous epithelial cell | 8.83e-10 | 63 |
stratified squamous epithelial cell | 8.86e-10 | 6 |
keratin accumulating cell | 8.86e-10 | 6 |
stratified epithelial cell | 8.86e-10 | 6 |
keratinizing barrier epithelial cell | 8.86e-10 | 6 |
epithelial fate stem cell | 8.86e-10 | 6 |
stratified epithelial stem cell | 8.86e-10 | 6 |
surface ectodermal cell | 8.86e-10 | 6 |
epithelial cell of cervix | 5.37e-08 | 2 |
epidermal cell | 8.34e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mammalian vulva | 1.84e-14 | 1 |
external female genitalia | 1.84e-14 | 1 |
mucosa of oral region | 3.16e-14 | 4 |
respiratory system mucosa | 3.16e-14 | 4 |
respiratory system | 1.04e-10 | 74 |
mouth mucosa | 1.07e-09 | 13 |
respiratory tract | 1.27e-08 | 54 |
trachea | 1.32e-08 | 7 |
respiratory airway | 1.32e-08 | 7 |
tracheobronchial tree | 1.33e-08 | 15 |
lower respiratory tract | 1.33e-08 | 15 |
uterine epithelium | 5.37e-08 | 2 |
cervix epithelium | 5.37e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.14e-23 | 14 |