FFCP PHASE1:Hg19::chr6:54172621..54172634,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27283 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14599 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-22bp_to_ENST00000486436_5end | |||
|description=CAGE_peak_3_at_TINAG_5end | |||
|id=chr6:54172621..54172634,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.29e-19!18;CL:0002518!1.29e-19!18;CL:1000507!3.42e-17!12;CL:1000494!3.42e-17!12;CL:1000449!9.36e-13!16;CL:0002681!3.86e-11!13;CL:0002584!3.86e-11!13;CL:0000239!6.40e-09!3;CL:1000615!6.40e-09!3;CL:0002306!6.40e-09!3;CL:0000313!7.29e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.05e-09;10!CL:1000494;1.05e-09;10!CL:0000945;5.28e-09;24!CL:0000239;1.35e-08;3!CL:1000615;1.35e-08;3!CL:0002306;1.35e-08;3!CL:1000449;9.09e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.15e-09,10;CL:1000494,1.15e-09,10;CL:0000945,4.86e-09,24;CL:0000826,4.86e-09,24;CL:0000239,1.40e-08,3;CL:1000615,1.40e-08,3;CL:0002306,1.40e-08,3;CL:1000449,9.64e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:4468!7.54e-13!2;DOID:299!8.96e-08!25;DOID:2152!7.29e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:4468;3.06e-12;2!DOID:3493;3.06e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.59e-12,2;DOID:4468,2.90e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0002113!8.12e-20!27;UBERON:0003918!8.12e-20!27;UBERON:0005095!8.12e-20!27;UBERON:0007687!8.12e-20!27;UBERON:0009773!3.42e-17!12;UBERON:0001231!3.42e-17!12;UBERON:0004810!3.42e-17!12;UBERON:0000489!1.94e-16!32;UBERON:0005172!3.60e-15!55;UBERON:0005173!3.60e-15!55;UBERON:0002417!2.02e-13!61;UBERON:0000916!2.02e-13!61;UBERON:0004211!9.36e-13!16;UBERON:0001285!9.36e-13!16;UBERON:0007684!9.36e-13!16;UBERON:0003220!9.36e-13!16;UBERON:0004208!9.36e-13!16;UBERON:0006555!5.70e-12!17;UBERON:0005103!5.70e-12!17;UBERON:0000083!5.70e-12!17;UBERON:0009201!5.70e-12!17;UBERON:0004819!5.70e-12!17;UBERON:0006553!5.70e-12!17;UBERON:0003074!5.70e-12!17;UBERON:0003060!5.70e-12!17;UBERON:0006554!1.83e-11!44;UBERON:0000080!2.84e-11!18;UBERON:0002120!2.84e-11!18;UBERON:0004875!2.84e-11!18;UBERON:0005721!2.84e-11!18;UBERON:0005754!2.84e-11!18;UBERON:0007297!2.84e-11!18;UBERON:0001008!3.60e-11!45;UBERON:0001225!3.86e-11!13;UBERON:0008987!3.86e-11!13;UBERON:0005177!2.16e-10!107;UBERON:0000058!2.66e-10!26;UBERON:0004876!4.35e-10!20;UBERON:0003887!1.40e-09!21;UBERON:0001851!5.29e-09!16;UBERON:0006853!6.40e-09!3;UBERON:0007685!6.40e-09!3;UBERON:0004134!6.40e-09!3;UBERON:0000353!1.86e-08!17;UBERON:0003103!3.90e-08!69;UBERON:0003886!2.19e-07!63;UBERON:0009569!3.50e-07!113;UBERON:0004911!7.29e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.05e-09;10!UBERON:0009773;1.05e-09;10!UBERON:0001231;1.05e-09;10!UBERON:0004810;1.05e-09;10!UBERON:0002113;6.75e-09;24!UBERON:0011143;6.75e-09;24!UBERON:0006853;1.35e-08;3!UBERON:0007685;1.35e-08;3!UBERON:0004134;1.35e-08;3!UBERON:0000489;1.82e-07;29!UBERON:0006554;3.10e-07;30!UBERON:0001008;3.10e-07;30!UBERON:0002394;7.27e-07;4!UBERON:0003928;7.27e-07;4!UBERON:0006555;9.09e-07;15!UBERON:0004819;9.09e-07;15!UBERON:0001285;9.09e-07;15!UBERON:0007684;9.09e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.15e-09,10;UBERON:0006853,1.40e-08,3;UBERON:0007685,1.40e-08,3;UBERON:0004134,1.40e-08,3;UBERON:0002113,3.24e-08,26;UBERON:0003918,3.24e-08,26;UBERON:0011143,3.24e-08,26;UBERON:0005095,3.24e-08,26;UBERON:0007687,3.24e-08,26;UBERON:0000489,5.52e-07,31;UBERON:0004211,9.64e-07,15;UBERON:0009773,9.64e-07,15;UBERON:0001231,9.64e-07,15;UBERON:0001285,9.64e-07,15;UBERON:0007684,9.64e-07,15;UBERON:0004208,9.64e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75088260692625,2.95562122019805,2.2826126580967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.308061348417659,0,0,1.26661954671451,0,0,0,0,0,0.501689773854853,0,1.66215201785745,0.671624264166535,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14825409610731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68798451622422,0.326465616318295,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.885847333632739,0,0,0,0,0,0,0,0,0,0,2.12775409707835,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76872455576384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,1.95068679971631,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286888821570705,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p3@TINAG | |||
}} |
Revision as of 12:22, 22 January 2014
Short description: | p3@TINAG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TINAG_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENST00000486436_5end |
EntrezGene: | TINAG |
HGNC: | 14599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.15e-09 | 10 |
nephron tubule epithelial cell | 1.15e-09 | 10 |
lymphocyte of B lineage | 4.86e-09 | 24 |
pro-B cell | 4.86e-09 | 24 |
brush border epithelial cell | 1.40e-08 | 3 |
kidney cortex tubule cell | 1.40e-08 | 3 |
epithelial cell of proximal tubule | 1.40e-08 | 3 |
epithelial cell of nephron | 9.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.15e-09 | 10 |
renal cortex tubule | 1.40e-08 | 3 |
region of nephron tubule | 1.40e-08 | 3 |
proximal tubule | 1.40e-08 | 3 |
kidney | 3.24e-08 | 26 |
kidney mesenchyme | 3.24e-08 | 26 |
upper urinary tract | 3.24e-08 | 26 |
kidney rudiment | 3.24e-08 | 26 |
kidney field | 3.24e-08 | 26 |
cavitated compound organ | 5.52e-07 | 31 |
nephron epithelium | 9.64e-07 | 15 |
renal tubule | 9.64e-07 | 15 |
nephron tubule | 9.64e-07 | 15 |
nephron | 9.64e-07 | 15 |
uriniferous tubule | 9.64e-07 | 15 |
nephrogenic mesenchyme | 9.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.59e-12 | 2 |
clear cell adenocarcinoma | 2.90e-12 | 2 |