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{{CL
{{CL
|id=CL:0000234
|alt_id=
|name=phagocyte
|namespace=cell
|def="Any cell capable of ingesting particulate matter via phagocytosis." [GOC:add, ISBN:0721601464]
|xref=BTO:0001044;;FMA:83806
|is_a=CL:0000219;;CL:0000325;;CL:0000473
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Any cell capable of ingesting particulate matter via phagocytosis." [GOC:add, ISBN:0721601464]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000234
|is_a=CL:0000219 ;;CL:0000325 ;;CL:0000473
|is_obsolete=
|located_in=
|located_in=
|name=phagocyte
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001044;;FMA:83806
}}
}}

Revision as of 10:16, 12 September 2014

Name:phagocyte
Namespace:cell
Definition:"Any cell capable of ingesting particulate matter via phagocytosis." [GOC:add, ISBN:0721601464]
Xrefs:
links:

BTO:0001044

FMA:83806


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000219(motile cell),CL:0000325(stuff accumulating cell),CL:0000473(defensive cell)



Children


is a:CL:0000235 (macrophage),CL:0000860 (classical monocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000234 (phagocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.0e-160FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_ef0d6277fa06a47eb00b57b38c76a60cp@chrX:37664331..37664352, +
3.0e-160FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_ef0d6277fa06a47eb00b57b38c76a60cp@chrX:37664331..37664352, +
1.12e-152FFCP PHASE1:Hg19::chr17:72606825..72606838,-#_94a2caeb1e07ad9ef7b268d43c7adc43p@chr17:72606825..72606838, -
1.12e-152FFCP PHASE2:Hg19::chr17:72606825..72606838,-#_94a2caeb1e07ad9ef7b268d43c7adc43p@chr17:72606825..72606838, -
4.58e-152FFCP PHASE1:Hg19::chr11:58979924..58979941,-#_81fb6ce1c01983ccda75623f18dabb8bp4@MPEG1
4.58e-152FFCP PHASE2:Hg19::chr11:58979924..58979941,-#_81fb6ce1c01983ccda75623f18dabb8bp4@MPEG1
5.71e-152FFCP PHASE1:Hg19::chr8:71452856..71452863,+#_3b673a96577752718359b19c4bc39745p@chr8:71452856..71452863, +
5.71e-152FFCP PHASE2:Hg19::chr8:71452856..71452863,+#_3b673a96577752718359b19c4bc39745p@chr8:71452856..71452863, +
2.22e-151FFCP PHASE1:Hg19::chr17:72607351..72607373,-#_844a5d680b5981b40649ce8896ea21fdp@chr17:72607351..72607373, -
2.22e-151FFCP PHASE2:Hg19::chr17:72607351..72607373,-#_844a5d680b5981b40649ce8896ea21fdp@chr17:72607351..72607373, -
2.51e-151FFCP PHASE2:Hg19::chr19:55208119..55208134,+#_7bb64e254b139d1170bfea6d28d13609p1@LILRP1
2.51e-151FFCP PHASE1:Hg19::chr19:55208119..55208134,+#_7bb64e254b139d1170bfea6d28d13609p1@LILRP1
6.02e-151FFCP PHASE1:Hg19::chr4:185314351..185314392,+#_fcdb331d732e14989ebece6eb78d2458p@chr4:185314351..185314392, +
6.02e-151FFCP PHASE2:Hg19::chr4:185314351..185314392,+#_fcdb331d732e14989ebece6eb78d2458p@chr4:185314351..185314392, +
1.13e-150FFCP PHASE1:Hg19::chr7:44661060..44661101,-#_65c3b72e0909343115429fae7015ccc0p@chr7:44661060..44661101, -
1.13e-150FFCP PHASE2:Hg19::chr7:44661060..44661101,-#_65c3b72e0909343115429fae7015ccc0p@chr7:44661060..44661101, -
2.0e-150FFCP PHASE1:Hg19::chr17:72628050..72628077,-#_fb31185eb98dcdc705119d05919f0acfp@chr17:72628050..72628077, -
2.0e-150FFCP PHASE2:Hg19::chr17:72628050..72628077,-#_fb31185eb98dcdc705119d05919f0acfp@chr17:72628050..72628077, -
9.24e-150FFCP PHASE1:Hg19::chr14:55249943..55249971,+#_92035a3c61c01821f8a4361f054aab90p@chr14:55249943..55249971, +
9.24e-150FFCP PHASE2:Hg19::chr14:55249943..55249971,+#_92035a3c61c01821f8a4361f054aab90p@chr14:55249943..55249971, +
1.2e-149FFCP PHASE2:Hg19::chr7:151503418..151503445,+#_703c5ed030d2abdf2b8bbec1138f6b78p1@ENST00000481153
1.2e-149FFCP PHASE1:Hg19::chr7:151503418..151503445,+#_703c5ed030d2abdf2b8bbec1138f6b78p1@ENST00000481153
5.67e-149FFCP PHASE2:Hg19::chr17:72607002..72607029,+#_940c173dfa29dfa85df9a9cbade38accp@chr17:72607002..72607029, +
5.67e-149FFCP PHASE1:Hg19::chr17:72607002..72607029,+#_940c173dfa29dfa85df9a9cbade38accp@chr17:72607002..72607029, +
6.94e-148FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_08cf4c942ebfac7521e2baeb4ac7caf0p@chr17:7482481..7482508, -
6.94e-148FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_08cf4c942ebfac7521e2baeb4ac7caf0p@chr17:7482481..7482508, -
1.27e-147FFCP PHASE2:Hg19::chr8:11755021..11755054,+#_a489bef66c7d32c898d88be7de24d8ccp@chr8:11755021..11755054, +
1.27e-147FFCP PHASE1:Hg19::chr8:11755021..11755054,+#_a489bef66c7d32c898d88be7de24d8ccp@chr8:11755021..11755054, +
1.17e-146FFCP PHASE1:Hg19::chr3:128943968..128943986,+#_cf2e14c310c320b3a4135a6927f01cd8p@chr3:128943968..128943986, +
1.17e-146FFCP PHASE2:Hg19::chr3:128943968..128943986,+#_cf2e14c310c320b3a4135a6927f01cd8p@chr3:128943968..128943986, +
1.84e-146FFCP PHASE1:Hg19::chr2:143623608..143623622,-#_3822c7c66fbaf70c4e5836f8b8f51c31p@chr2:143623608..143623622, -
1.84e-146FFCP PHASE2:Hg19::chr2:143623608..143623622,-#_3822c7c66fbaf70c4e5836f8b8f51c31p@chr2:143623608..143623622, -
8.93e-146FFCP PHASE1:Hg19::chr19:51625943..51625962,+#_8e7e1f4812236ee0e0906174b5ad7728p@chr19:51625943..51625962, +
8.93e-146FFCP PHASE2:Hg19::chr19:51625943..51625962,+#_8e7e1f4812236ee0e0906174b5ad7728p@chr19:51625943..51625962, +
1.23e-145FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_a0cefbdff86ea2dfd4f1b641b10631cfp@chr1:161188746..161188758, +
1.23e-145FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_a0cefbdff86ea2dfd4f1b641b10631cfp@chr1:161188746..161188758, +
2.49e-145FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_b1b6db011bfbeac5cff3aff2ce389879p@chr19:51625924..51625942, +
2.49e-145FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_b1b6db011bfbeac5cff3aff2ce389879p@chr19:51625924..51625942, +
2.76e-145FFCP PHASE1:Hg19::chr1:111182849..111182891,+#_e19ddb5c53d581a6b46b628c9fae70fep@chr1:111182849..111182891, +
2.76e-145FFCP PHASE2:Hg19::chr1:111182849..111182891,+#_e19ddb5c53d581a6b46b628c9fae70fep@chr1:111182849..111182891, +
4.97e-145FFCP PHASE2:Hg19::chr17:72607152..72607174,-#_925d4ae1e0059d480dd56f31928b61cfp@chr17:72607152..72607174, -
4.97e-145FFCP PHASE1:Hg19::chr17:72607152..72607174,-#_925d4ae1e0059d480dd56f31928b61cfp@chr17:72607152..72607174, -
5.74e-145FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_4066d31d7ac9276101b09ca65a8d60a5p@chr7:77050554..77050601, +
5.74e-145FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_4066d31d7ac9276101b09ca65a8d60a5p@chr7:77050554..77050601, +
8.55e-145FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_745b530a6a3548551a84cc50f7115233p2@ZEB2-AS1
8.55e-145FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_745b530a6a3548551a84cc50f7115233p2@ZEB2-AS1
9.86e-145FFCP PHASE2:Hg19::chr11:68847043..68847057,+#_c62c72fcdd6e034652865fa2c2a992c7p@chr11:68847043..68847057, +
9.86e-145FFCP PHASE1:Hg19::chr11:68847043..68847057,+#_c62c72fcdd6e034652865fa2c2a992c7p@chr11:68847043..68847057, +
1.43e-144FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_abaa05b4d566d3f6d67fdbdd5d176152p@chr1:161188661..161188679, +
1.43e-144FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_abaa05b4d566d3f6d67fdbdd5d176152p@chr1:161188661..161188679, +
1.93e-144FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_21f22ef6302f1d04f91c8703add34c82p1@ENST00000425320
1.93e-144FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_21f22ef6302f1d04f91c8703add34c82p1@ENST00000425320
5.05e-144FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_ad42d8c23ff6b66c1770866d5eefbd0ap5@IFI30
5.05e-144FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_ad42d8c23ff6b66c1770866d5eefbd0ap5@IFI30
2.75e-143FFCP PHASE2:Hg19::chr1:120593738..120593745,+#_0905f34aa1d89314f3145a791b7c0edap@chr1:120593738..120593745, +
2.75e-143FFCP PHASE1:Hg19::chr1:120593738..120593745,+#_0905f34aa1d89314f3145a791b7c0edap@chr1:120593738..120593745, +
3.2e-143FFCP PHASE2:Hg19::chr1:27943424..27943442,-#_a9b4b589d0255068806fa8f947c28052p@chr1:27943424..27943442, -
3.2e-143FFCP PHASE1:Hg19::chr1:27943424..27943442,-#_a9b4b589d0255068806fa8f947c28052p@chr1:27943424..27943442, -
5.48e-143FFCP PHASE1:Hg19::chr7:48009999..48010016,+#_46f548382fd45ada24a66bb26cfbd286p@chr7:48009999..48010016, +
5.48e-143FFCP PHASE2:Hg19::chr7:48009999..48010016,+#_46f548382fd45ada24a66bb26cfbd286p@chr7:48009999..48010016, +
9.17e-143FFCP PHASE2:Hg19::chr16:82229835..82229848,+#_eae7b083be4b2fe7b01fd85e44840401p@chr16:82229835..82229848, +
9.17e-143FFCP PHASE1:Hg19::chr16:82229835..82229848,+#_eae7b083be4b2fe7b01fd85e44840401p@chr16:82229835..82229848, +
2.09e-142FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_f1a6a35fb706c5834489f59b2299eab3p@chr2:129283966..129283970, +
2.09e-142FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_f1a6a35fb706c5834489f59b2299eab3p@chr2:129283966..129283970, +
2.81e-142FFCP PHASE2:Hg19::chr15:59469817..59469836,+#_d6bbc7b281487e5c7c9bd7ac78bfdabbp@chr15:59469817..59469836, +
2.81e-142FFCP PHASE1:Hg19::chr15:59469817..59469836,+#_d6bbc7b281487e5c7c9bd7ac78bfdabbp@chr15:59469817..59469836, +
3.09e-142FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_7991bf8865e24dc04d581fb2987e358dp@chr2:145429606..145429658, +
3.09e-142FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_7991bf8865e24dc04d581fb2987e358dp@chr2:145429606..145429658, +
3.6e-142FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_a461cbcf7db050f9608e084d1859e1cbp@chr10:73648356..73648408, -
3.6e-142FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_a461cbcf7db050f9608e084d1859e1cbp@chr10:73648356..73648408, -
4.15e-142FFCP PHASE2:Hg19::chr4:159731607..159731627,+#_862e19e4cf08da19043fde0f3dd66b6dp@chr4:159731607..159731627, +
4.15e-142FFCP PHASE1:Hg19::chr4:159731607..159731627,+#_862e19e4cf08da19043fde0f3dd66b6dp@chr4:159731607..159731627, +
9.43e-142FFCP PHASE1:Hg19::chr8:11754835..11754867,-#_2d531752de6bb2a5dff24eadf4bd4821p1@ENST00000525252
9.43e-142FFCP PHASE2:Hg19::chr8:11754835..11754867,-#_2d531752de6bb2a5dff24eadf4bd4821p1@ENST00000525252
1.12e-141FFCP PHASE1:Hg19::chr20:2191870..2191909,-#_3d37cb2751102604946efb51d8785d00p@chr20:2191870..2191909, -
1.12e-141FFCP PHASE2:Hg19::chr20:2191870..2191909,-#_3d37cb2751102604946efb51d8785d00p@chr20:2191870..2191909, -
1.17e-141FFCP PHASE1:Hg19::chr1:161188022..161188042,+#_e5767a8d8f1d6ab39a0ada5fae743391p@chr1:161188022..161188042, +
1.17e-141FFCP PHASE2:Hg19::chr1:161188022..161188042,+#_e5767a8d8f1d6ab39a0ada5fae743391p@chr1:161188022..161188042, +
3.2e-141FFCP PHASE1:Hg19::chr17:72606678..72606702,-#_298a3252b9164472fe7ea30067bde1a7p@chr17:72606678..72606702, -
3.2e-141FFCP PHASE2:Hg19::chr17:72606678..72606702,-#_298a3252b9164472fe7ea30067bde1a7p@chr17:72606678..72606702, -
3.49e-141FFCP PHASE1:Hg19::chr22:17717917..17717939,-#_d58d5d97c3098684c75cbbe8bd9f0593p@chr22:17717917..17717939, -
3.49e-141FFCP PHASE2:Hg19::chr22:17717917..17717939,-#_d58d5d97c3098684c75cbbe8bd9f0593p@chr22:17717917..17717939, -
4.64e-141FFCP PHASE2:Hg19::chr6:46698996..46699019,+#_d42a47c0be519839efcbc85e10d4a585p@chr6:46698996..46699019, +
4.64e-141FFCP PHASE1:Hg19::chr6:46698996..46699019,+#_d42a47c0be519839efcbc85e10d4a585p@chr6:46698996..46699019, +
5.93e-141FFCP PHASE2:Hg19::chr2:143623546..143623573,-#_3c0eca9bc284ebedffbfddbf46d3e24bp@chr2:143623546..143623573, -
5.93e-141FFCP PHASE1:Hg19::chr2:143623546..143623573,-#_3c0eca9bc284ebedffbfddbf46d3e24bp@chr2:143623546..143623573, -
6.3e-141FFCP PHASE2:Hg19::chr12:125197870..125197907,+#_ebb581f60e0ae1b28048a6c4f652fb1cp@chr12:125197870..125197907, +
6.3e-141FFCP PHASE1:Hg19::chr12:125197870..125197907,+#_ebb581f60e0ae1b28048a6c4f652fb1cp@chr12:125197870..125197907, +
6.36e-141FFCP PHASE2:Hg19::chr20:2191845..2191866,-#_682feac869d988ddabdfddca140debecp@chr20:2191845..2191866, -
6.36e-141FFCP PHASE1:Hg19::chr20:2191845..2191866,-#_682feac869d988ddabdfddca140debecp@chr20:2191845..2191866, -
6.5e-141FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_85227248866cc855eb5e47dd701387bbp1@CYP1B1-AS1
6.5e-141FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_85227248866cc855eb5e47dd701387bbp1@CYP1B1-AS1
7.62e-141FFCP PHASE1:Hg19::chr5:156534439..156534470,+#_402df730c0b1142f74e5178c3f0ffd0bp@chr5:156534439..156534470, +
7.62e-141FFCP PHASE2:Hg19::chr5:156534439..156534470,+#_402df730c0b1142f74e5178c3f0ffd0bp@chr5:156534439..156534470, +
1.24e-140FFCP PHASE1:Hg19::chr2:145421047..145421067,+#_016a655d778fdc779826b747a2a14faap@chr2:145421047..145421067, +
1.24e-140FFCP PHASE2:Hg19::chr2:145421047..145421067,+#_016a655d778fdc779826b747a2a14faap@chr2:145421047..145421067, +
1.97e-140FFCP PHASE1:Hg19::chr9:137300477..137300490,+#_ac5cd495f26599f02083e0a45e97d748p@chr9:137300477..137300490, +
1.97e-140FFCP PHASE2:Hg19::chr9:137300477..137300490,+#_ac5cd495f26599f02083e0a45e97d748p@chr9:137300477..137300490, +
3.85e-140FFCP PHASE2:Hg19::chr10:106006943..106006961,+#_a51eac3f6b9ce41562e7888b3f40ad10p@chr10:106006943..106006961, +
3.85e-140FFCP PHASE1:Hg19::chr10:106006943..106006961,+#_a51eac3f6b9ce41562e7888b3f40ad10p@chr10:106006943..106006961, +

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