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{{UBERON
{{UBERON
|id=UBERON:0001280
|alt_id=UBERON:0003223;;UBERON:FMA_17540-MA_0000366
|name=liver parenchyma
|namespace=
|def="the functional units of the liver including the lobules." [MP:0008986]
|xref=AAO:0010405;;EHDAA2:0001004;;EHDAA:2201;;EMAPA:17203;;FMA:17540;;MA:0000366;;SCTID:363535004;;VHOG:0000539;;XAO:0000454
|is_a=UBERON:0000353;;UBERON:0004119
|synonym="hepatic parenchyma" EXACT [FMA:17540];;"hepatic parenchyme" RELATED [VHOG:0000539];;"liver parenchyme" EXACT [XAO:0000454];;"parenchyma of liver" EXACT [FMA:17540]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:0003223;;UBERON:FMA_17540-MA_0000366
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the functional units of the liver including the lobules." [MP:0008986]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0005171;;UBERON:0008835
|develops_from=UBERON:0005171;;UBERON:0008835
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001280
|is_a=UBERON:0000353 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=liver parenchyma
|namespace=
|obo_creation_date=
|part_of=UBERON:0002107
|part_of=UBERON:0002107
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="hepatic parenchyma" EXACT [FMA:17540];;"hepatic parenchyme" RELATED [VHOG:0000539];;"liver parenchyme" EXACT [XAO:0000454];;"parenchyma of liver" EXACT [FMA:17540]
|union_of=
|xref=AAO:0010405;;EHDAA2:0001004;;EHDAA:2201;;EMAPA:17203;;FMA:17540;;MA:0000366;;SCTID:363535004;;VHOG:0000539;;XAO:0000454
}}
}}

Revision as of 11:02, 12 September 2014

Name:liver parenchyma
Definition:"the functional units of the liver including the lobules." [MP:0008986]
Xrefs:
links:

AAO:0010405
EHDAA2:0001004
EHDAA:2201
EMAPA:17203
FMA:17540
MA:0000366
SCTID:363535004
VHOG:0000539

XAO:0000454
Synonyms: "hepatic parenchyma" EXACT [FMA:17540]
"hepatic parenchyme" RELATED [VHOG:0000539]
"liver parenchyme" EXACT [XAO:0000454]
"parenchyma of liver" EXACT [FMA:17540]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003223
UBERON:FMA_17540-MA_0000366

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000353(parenchyma),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0005171(hepatic duct),UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0002107(liver)



Children

part of:UBERON:0001171 (portal lobule),UBERON:0004647 (liver lobule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001280 (liver parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
9.74e-88FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:48685851..48685860, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_103e79e5a3c1e504c4a5bd9b992197fap4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_103e79e5a3c1e504c4a5bd9b992197fap8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_103e79e5a3c1e504c4a5bd9b992197fap4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:62199266..62199267, +
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_103e79e5a3c1e504c4a5bd9b992197fap6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_103e79e5a3c1e504c4a5bd9b992197fap6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:137570295..137570315, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_103e79e5a3c1e504c4a5bd9b992197fap@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:32178407..32178408, -

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