CL:0000049: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment=CMP are reportedly CD38-positive, CD45RA-negative, and CD123-positive. | |comment=CMP are reportedly CD38-positive, CD45RA-negative, and CD123-positive. | ||
|created_by= | |created_by= | ||
| | |def="A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. These cells are CD34-positive, and express Gata-1, Gata2, C/EBPa, and Pu.1." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0878932437, MESH:D023461, PMCID:PMC2212039, PMID:10724173, PMID:16551251] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=CL:0000050;;CL:0000051;;CL:0000557 | |||
|has_quality= | |has_quality= | ||
|id=CL:0000049 | |||
|is_a=CL:0002032 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=common myeloid progenitor | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym="cfu-gemm" RELATED [ISBN:0878932437];;"CFU-S" RELATED [ISBN:0878932437];;"CMP" EXACT [ISBN:0878932437];;"colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ISBN:0878932437];;"common myeloid precursor" EXACT [];;"multipotential myeloid stem cell" RELATED [ISBN:0878932437];;"myeloid stem cell" RELATED [ISBN:0878932437];;"pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437] | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:28, 12 September 2014
| Name: | common myeloid progenitor |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. These cells are CD34-positive, and express Gata-1, Gata2, C/EBPa, and Pu.1." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0878932437, MESH:D023461, PMCID:PMC2212039, PMID:10724173, PMID:16551251] |
| Synonyms: |
"cfu-gemm" RELATED [ISBN:0878932437] "CFU-S" RELATED [ISBN:0878932437] "CMP" EXACT [ISBN:0878932437] "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ISBN:0878932437] "common myeloid precursor" EXACT [] "multipotential myeloid stem cell" RELATED [ISBN:0878932437] "myeloid stem cell" RELATED [ISBN:0878932437] "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437] |
| Comments: | CMP are reportedly CD38-positive, CD45RA-negative, and CD123-positive. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002032(hematopoietic oligopotent progenitor cell) |
|---|---|
| disjoint_from: | CL:0000050(megakaryocyte-erythroid progenitor cell),CL:0000051(common lymphoid progenitor),CL:0000557(granulocyte monocyte progenitor cell) |
Children
| derives from: | FF:0000041 (common myeloid progenitor sample) |
|---|---|
| develops from: | CL:0000050 (megakaryocyte-erythroid progenitor cell),CL:0000557 (granulocyte monocyte progenitor cell),CL:0000763 (myeloid cell),CL:0000766 (myeloid leukocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12122-128C7 (common myeloid progenitor CMP, biol_rep1)
- 12125-128D1 (common myeloid progenitor CMP, biol_rep2)
- 12128-128D4 (common myeloid progenitor CMP, biol_rep3)
- 12130-128D6 (common myeloid progenitor CMP, donor1)
- 12134-128E1 (common myeloid progenitor CMP, donor2)
- 12138-128E5
Mouse (Mus musculus)
- 12122-128C7 (common myeloid progenitor CMP, biol_rep1)
- 12125-128D1 (common myeloid progenitor CMP, biol_rep2)
- 12128-128D4 (common myeloid progenitor CMP, biol_rep3)
- 12130-128D6 (common myeloid progenitor CMP, donor1)
- 12134-128E1 (common myeloid progenitor CMP, donor2)
- 12138-128E5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000049 (common myeloid progenitor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.01e-115 | FFCP PHASE2:Hg19::chr11:47399920..47399931,-#_ff91f69b80faddf40a72d418d9d734ee | p7@SPI1 |
| 5.01e-115 | FFCP PHASE1:Hg19::chr11:47399920..47399931,-#_ff91f69b80faddf40a72d418d9d734ee | p7@SPI1 |
| 6.88e-112 | FFCP PHASE2:Hg19::chr11:47400045..47400060,-#_b166924bb2708eb64809f70108a53ff6 | p6@SPI1 |
| 6.88e-112 | FFCP PHASE1:Hg19::chr11:47400045..47400060,-#_b166924bb2708eb64809f70108a53ff6 | p6@SPI1 |
| 1.87e-103 | FFCP PHASE2:Hg19::chr8:55074639..55074655,+#_1aaa639b43f39dce40f2491b419ff92a | p@chr8:55074639..55074655, + |
| 1.87e-103 | FFCP PHASE1:Hg19::chr8:55074639..55074655,+#_1aaa639b43f39dce40f2491b419ff92a | p@chr8:55074639..55074655, + |
| 5.28e-102 | FFCP PHASE2:Hg19::chr2:109204876..109204889,+#_819a6d242b10279ffe482258ace6a4de | p7@LIMS1 |
| 5.28e-102 | FFCP PHASE1:Hg19::chr2:109204876..109204889,+#_819a6d242b10279ffe482258ace6a4de | p7@LIMS1 |
| 3.01e-101 | FFCP PHASE1:Hg19::chr19:54876689..54876707,-#_9f6008e81733936df6eae75167c16e5a | p6@LAIR1 |
| 3.01e-101 | FFCP PHASE2:Hg19::chr19:54876689..54876707,-#_9f6008e81733936df6eae75167c16e5a | p6@LAIR1 |
| 2.92e-100 | FFCP PHASE2:Hg19::chr17:72528538..72528554,+#_9fa64b1836d74fc90c49be3d8e67787d | p@chr17:72528538..72528554, + |
| 2.92e-100 | FFCP PHASE1:Hg19::chr17:72528538..72528554,+#_9fa64b1836d74fc90c49be3d8e67787d | p@chr17:72528538..72528554, + |
| 1.71e-99 | FFCP PHASE2:Hg19::chr11:47400032..47400043,-#_af45ee27a78c925df11cb84f0c24aaee | p5@SPI1 |
| 1.71e-99 | FFCP PHASE1:Hg19::chr11:47400032..47400043,-#_af45ee27a78c925df11cb84f0c24aaee | p5@SPI1 |
| 3.09e-99 | FFCP PHASE2:Hg19::chr6:137105174..137105195,+#_3482a2c63c5d8544b35169c61c018282 | p@chr6:137105174..137105195, + |
| 3.09e-99 | FFCP PHASE1:Hg19::chr6:137105174..137105195,+#_3482a2c63c5d8544b35169c61c018282 | p@chr6:137105174..137105195, + |
| 3.6e-99 | FFCP PHASE1:Hg19::chr19:55084438..55084495,+#_abb6ab241e216fff5d2650b235745aa5 | p2@LILRA2 |
| 3.6e-99 | FFCP PHASE2:Hg19::chr19:55084438..55084495,+#_abb6ab241e216fff5d2650b235745aa5 | p2@LILRA2 |
| 5.23e-99 | FFCP PHASE1:Hg19::chr12:118796868..118796885,-#_67603e375b75dbd9c5fa3b7b80f90509 | p6@TAOK3 |
| 5.23e-99 | FFCP PHASE2:Hg19::chr12:118796868..118796885,-#_67603e375b75dbd9c5fa3b7b80f90509 | p6@TAOK3 |
| 2.14e-98 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_7c02bd86410cc8960ada083d58df4976 | p7@EMILIN2 |
| 2.14e-98 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_7c02bd86410cc8960ada083d58df4976 | p7@EMILIN2 |
| 2.31e-97 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_50a164d97b97576a171afabd1e32db33 | p@chr15:65174546..65174583, - |
| 2.31e-97 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_50a164d97b97576a171afabd1e32db33 | p@chr15:65174546..65174583, - |
| 4.87e-97 | FFCP PHASE2:Hg19::chr20:35202667..35202682,+#_5bb00fbfdad797f66bdf9648a196668a | p4@C20orf24 |
| 4.87e-97 | FFCP PHASE1:Hg19::chr20:35202667..35202682,+#_5bb00fbfdad797f66bdf9648a196668a | p4@C20orf24 |
| 1.04e-96 | FFCP PHASE1:Hg19::chr13:108922429..108922446,+#_d5ccc8537118e0ab09dc79401ebf4a57 | p6@TNFSF13B |
| 1.04e-96 | FFCP PHASE2:Hg19::chr13:108922429..108922446,+#_d5ccc8537118e0ab09dc79401ebf4a57 | p6@TNFSF13B |
| 1.68e-96 | FFCP PHASE1:Hg19::chr11:47399947..47399961,-#_f78ceee86c1622760e6350ae45b711ca | p3@SPI1 |
| 1.68e-96 | FFCP PHASE2:Hg19::chr11:47399947..47399961,-#_f78ceee86c1622760e6350ae45b711ca | p3@SPI1 |
| 3.76e-96 | FFCP PHASE2:Hg19::chr17:72709134..72709145,-#_c71d0bddb4cb17b2a162481174cc59f4 | p2@CD300LF |
| 3.76e-96 | FFCP PHASE1:Hg19::chr17:72709134..72709145,-#_c71d0bddb4cb17b2a162481174cc59f4 | p2@CD300LF |
| 6.69e-96 | FFCP PHASE1:Hg19::chr19:36400209..36400286,-#_f831fb44455df1488bf3f582893c40d1 | p@chr19:36400209..36400286, - |
| 6.69e-96 | FFCP PHASE2:Hg19::chr19:36400209..36400286,-#_f831fb44455df1488bf3f582893c40d1 | p@chr19:36400209..36400286, - |
| 7.75e-96 | FFCP PHASE1:Hg19::chr11:70161074..70161080,-#_eef6a0c70f85208f39092b065d43c48e | p@chr11:70161074..70161080, - |
| 7.75e-96 | FFCP PHASE2:Hg19::chr11:70161074..70161080,-#_eef6a0c70f85208f39092b065d43c48e | p@chr11:70161074..70161080, - |
| 7.57e-95 | FFCP PHASE1:Hg19::chr2:109204909..109204928,+#_81abc69b3f1f31b9556e9f965855f93f | p3@LIMS1 |
| 7.57e-95 | FFCP PHASE2:Hg19::chr2:109204909..109204928,+#_81abc69b3f1f31b9556e9f965855f93f | p3@LIMS1 |
| 1.23e-94 | FFCP PHASE1:Hg19::chr6:36665587..36665612,+#_b608be6e801b88228ed4f8795401b8eb | p1@uc010jwl.1 |
| 1.23e-94 | FFCP PHASE2:Hg19::chr6:36665587..36665612,+#_b608be6e801b88228ed4f8795401b8eb | p1@uc010jwl.1 |
| 4.83e-94 | FFCP PHASE2:Hg19::chr22:46998103..46998127,-#_5ebe20ccb7ebcdd3caebf5435894e827 | p@chr22:46998103..46998127, - |
| 4.83e-94 | FFCP PHASE1:Hg19::chr22:46998103..46998127,-#_5ebe20ccb7ebcdd3caebf5435894e827 | p@chr22:46998103..46998127, - |
| 6.81e-94 | FFCP PHASE1:Hg19::chr5:57787254..57787271,+#_7b14e423478a122547e34f55a1bc06be | p2@GAPT |
| 6.81e-94 | FFCP PHASE2:Hg19::chr5:57787254..57787271,+#_7b14e423478a122547e34f55a1bc06be | p2@GAPT |
| 2.22e-93 | FFCP PHASE1:Hg19::chr6:31583632..31583651,+#_a97a7a02049a0e1902d60e4faa9f567b | p5@AIF1 |
| 2.22e-93 | FFCP PHASE2:Hg19::chr6:31583632..31583651,+#_a97a7a02049a0e1902d60e4faa9f567b | p5@AIF1 |
| 6.0e-93 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_1cc73dca6693892dcd653bf303855aa2 | p@chr16:50313426..50313459, + |
| 6.0e-93 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_1cc73dca6693892dcd653bf303855aa2 | p@chr16:50313426..50313459, + |
| 7.03e-93 | FFCP PHASE2:Hg19::chr11:47399996..47400014,-#_a8efabdefd98260c3cdd23affc67d900 | p4@SPI1 |
| 7.03e-93 | FFCP PHASE1:Hg19::chr11:47399996..47400014,-#_a8efabdefd98260c3cdd23affc67d900 | p4@SPI1 |
| 9.92e-93 | FFCP PHASE2:Hg19::chr17:4642716..4642727,-#_474a199f0e3212d66f1383b0ec19ada8 | p7@CXCL16 |
| 9.92e-93 | FFCP PHASE1:Hg19::chr17:4642716..4642727,-#_474a199f0e3212d66f1383b0ec19ada8 | p7@CXCL16 |
| 1.41e-92 | FFCP PHASE1:Hg19::chr3:98482159..98482172,+#_55fe533bf4b903fa1502293556a7be94 | p5@ST3GAL6 |
| 1.41e-92 | FFCP PHASE2:Hg19::chr3:98482159..98482172,+#_55fe533bf4b903fa1502293556a7be94 | p5@ST3GAL6 |
| 1.63e-92 | FFCP PHASE1:Hg19::chr6:137105206..137105220,+#_4b9a3102c375d0de25b54e8f896ede32 | p@chr6:137105206..137105220, + |
| 1.63e-92 | FFCP PHASE2:Hg19::chr6:137105206..137105220,+#_4b9a3102c375d0de25b54e8f896ede32 | p@chr6:137105206..137105220, + |
| 2.56e-92 | FFCP PHASE1:Hg19::chr13:108922478..108922493,+#_d29a143ad6df6c2dbb87df043bfcb15d | p5@TNFSF13B |
| 2.56e-92 | FFCP PHASE2:Hg19::chr13:108922478..108922493,+#_d29a143ad6df6c2dbb87df043bfcb15d | p5@TNFSF13B |
| 6.37e-92 | FFCP PHASE1:Hg19::chr22:37257098..37257115,+#_ad20e568cbb4a19f7e08f45503cdbdf0 | p3@NCF4 |
| 6.37e-92 | FFCP PHASE2:Hg19::chr22:37257098..37257115,+#_ad20e568cbb4a19f7e08f45503cdbdf0 | p3@NCF4 |
| 7.64e-92 | FFCP PHASE2:Hg19::chr19:36398154..36398173,-#_e76d86c2e49def309b276313a3a70c7d | p@chr19:36398154..36398173, - |
| 7.64e-92 | FFCP PHASE1:Hg19::chr19:36398154..36398173,-#_e76d86c2e49def309b276313a3a70c7d | p@chr19:36398154..36398173, - |
| 1.22e-91 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_b616d7edcb62cfbfd11b1d28b876e9b5 | p@chr7:2832730..2832791, + |
| 1.22e-91 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_b616d7edcb62cfbfd11b1d28b876e9b5 | p@chr7:2832730..2832791, + |
| 2.01e-91 | FFCP PHASE1:Hg19::chr17:9923211..9923249,-#_fb0e4c54e2e46764aea3310e6cacdb89 | p10@GAS7 |
| 2.01e-91 | FFCP PHASE2:Hg19::chr17:9923211..9923249,-#_fb0e4c54e2e46764aea3310e6cacdb89 | p10@GAS7 |
| 4.57e-91 | FFCP PHASE2:Hg19::chr5:176936817..176936841,-#_d5348db828f6813c8ef605bda471fd7f | p2@DOK3 |
| 4.57e-91 | FFCP PHASE1:Hg19::chr5:176936817..176936841,-#_d5348db828f6813c8ef605bda471fd7f | p2@DOK3 |
| 1.8e-90 | FFCP PHASE2:Hg19::chr22:37257002..37257013,+#_3e77a1d8cbc1375069f5f8ea7547e424 | p4@NCF4 |
| 1.8e-90 | FFCP PHASE1:Hg19::chr22:37257002..37257013,+#_3e77a1d8cbc1375069f5f8ea7547e424 | p4@NCF4 |
| 2.43e-90 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_7815d7c2e39a54a31b6db622dfbc8776 | p@chr19:18286116..18286156, + |
| 2.43e-90 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_7815d7c2e39a54a31b6db622dfbc8776 | p@chr19:18286116..18286156, + |
| 3.13e-90 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_7dca599d70c41e2441fc1e939159c681 | p@chr1:161188661..161188679, + |
| 3.13e-90 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_7dca599d70c41e2441fc1e939159c681 | p@chr1:161188661..161188679, + |
| 9.35e-90 | FFCP PHASE2:Hg19::chr6:31554766..31554777,+#_94eb06ec747184c56e7dc7505bc6a511 | p8@LST1 |
| 9.35e-90 | FFCP PHASE1:Hg19::chr6:31554766..31554777,+#_94eb06ec747184c56e7dc7505bc6a511 | p8@LST1 |
| 9.81e-90 | FFCP PHASE2:Hg19::chr17:6916789..6916808,+#_6a8bf50d8670c7c63c59f22aac823552 | p10@C17orf49 |
| 9.81e-90 | FFCP PHASE1:Hg19::chr17:6916789..6916808,+#_6a8bf50d8670c7c63c59f22aac823552 | p10@C17orf49 |
| 1.04e-89 | FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_e5caa461a0cac533e5679411e3953994 | p@chr14:103587759..103587770, + |
| 1.04e-89 | FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_e5caa461a0cac533e5679411e3953994 | p@chr14:103587759..103587770, + |
| 2.62e-89 | FFCP PHASE2:Hg19::chr19:51714319..51714374,+#_18d43a20622fac8d6a2abd423ba9fe55 | p@chr19:51714319..51714374, + |
| 2.62e-89 | FFCP PHASE1:Hg19::chr19:51714319..51714374,+#_18d43a20622fac8d6a2abd423ba9fe55 | p@chr19:51714319..51714374, + |
| 4.84e-89 | FFCP PHASE1:Hg19::chr6:137105237..137105263,+#_e34872376821a1eb6cef179d4a049d52 | p@chr6:137105237..137105263, + |
| 4.84e-89 | FFCP PHASE2:Hg19::chr6:137105237..137105263,+#_e34872376821a1eb6cef179d4a049d52 | p@chr6:137105237..137105263, + |
| 4.9e-89 | FFCP PHASE2:Hg19::chr5:176936844..176936870,-#_80bf5ff7cedadd82ab6d23ef3cc3569c | p3@DOK3 |
| 4.9e-89 | FFCP PHASE1:Hg19::chr5:176936844..176936870,-#_80bf5ff7cedadd82ab6d23ef3cc3569c | p3@DOK3 |
| 7.3e-89 | FFCP PHASE2:Hg19::chr22:32034409..32034470,-#_7d06bc3b9ba53d55a080a157a50a6e6e | p4@PISD |
| 7.3e-89 | FFCP PHASE1:Hg19::chr22:32034409..32034470,-#_7d06bc3b9ba53d55a080a157a50a6e6e | p4@PISD |
| 8.29e-89 | FFCP PHASE2:Hg19::chr1:161039459..161039478,-#_e3c66d369948d842e941c3ff4071a774 | p4@ARHGAP30 |
| 8.29e-89 | FFCP PHASE1:Hg19::chr1:161039459..161039478,-#_e3c66d369948d842e941c3ff4071a774 | p4@ARHGAP30 |
| 9.58e-89 | FFCP PHASE2:Hg19::chr1:161475228..161475239,+#_844734e02afa9411b245a643fd5a029d | p3@FCGR2A |
| 9.58e-89 | FFCP PHASE1:Hg19::chr1:161475228..161475239,+#_844734e02afa9411b245a643fd5a029d | p3@FCGR2A |
| 1.26e-88 | FFCP PHASE2:Hg19::chr18:5466317..5466374,-#_aaef8446aadaa0689253acae7fd02239 | p@chr18:5466317..5466374, - |
| 1.26e-88 | FFCP PHASE1:Hg19::chr18:5466317..5466374,-#_aaef8446aadaa0689253acae7fd02239 | p@chr18:5466317..5466374, - |
| 1.34e-88 | FFCP PHASE1:Hg19::chr16:8738211..8738249,+#_45b772e189991236f5b2dc43b2f01304 | p@chr16:8738211..8738249, + |
| 1.34e-88 | FFCP PHASE2:Hg19::chr16:8738211..8738249,+#_45b772e189991236f5b2dc43b2f01304 | p@chr16:8738211..8738249, + |
| 2.3e-88 | FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_f26640c6fc84b8e62b664d90cb65d940 | p@chr19:18285955..18285972, + |
| 2.3e-88 | FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_f26640c6fc84b8e62b664d90cb65d940 | p@chr19:18285955..18285972, + |
| 3.13e-88 | FFCP PHASE2:Hg19::chr1:28211791..28211853,+#_951ca276c82ad32910ebaa613359df18 | p@chr1:28211791..28211853, + |
| 3.13e-88 | FFCP PHASE1:Hg19::chr1:28211791..28211853,+#_951ca276c82ad32910ebaa613359df18 | p@chr1:28211791..28211853, + |
