CL:0000147: Difference between revisions
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|located_in= | |located_in= | ||
|name=pigment cell | |name=pigment cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:30, 12 September 2014
| Name: | pigment cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A pigment cell is a cell that contains pigment granules." [GOC:tfm] |
| Synonyms: |
"chromatocyte" EXACT [] "chromatophore" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000325(stuff accumulating cell) |
|---|
Children
| is a: | CL:0000148 (melanocyte),CL:0000149 (visual pigment cell),CL:0000342 (pigment cell (sensu Vertebrata)) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11274-116H5 (Melanocyte - light, donor1)
- 11351-117H1 (Melanocyte - light, donor2)
- 11423-118G1 (Melanocyte - light, donor3)
- 11502-119F8 (Melanocyte - dark, donor1)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11581-120F6
- 11582-120F7 (Melanocyte - dark, donor2)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000147 (pigment cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.97e-100 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25 | p2@SLC45A2 |
| 5.97e-100 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25 | p2@SLC45A2 |
| 1.79e-99 | FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dba | p6@GPR143 |
| 1.79e-99 | FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dba | p6@GPR143 |
| 2.98e-99 | FFCP PHASE2:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7 | p@chr12:56349406..56349415, - |
| 2.98e-99 | FFCP PHASE1:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7 | p@chr12:56349406..56349415, - |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12708060..12708071, - |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12702367..12702377, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12708978..12708990, + |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1 | p33@TYRP1 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1 | p1@AK129493 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr16:89986251..89986268, + |
| 4.6e-98 | FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1 | p7@MFSD12 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12709332..12709345, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1 | p33@TYRP1 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12708060..12708071, - |
| 4.6e-98 | FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr16:89986251..89986268, + |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1 | p24@TYRP1 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1 | p1@AK129493 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1 | p1@ENST00000380106 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12708978..12708990, + |
| 4.6e-98 | FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1 | p11@IL6R |
| 4.6e-98 | FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1 | p7@MFSD12 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12702367..12702377, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1 | p24@TYRP1 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1 | p1@ENST00000380106 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1 | p11@IL6R |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1 | p@chr9:12709332..12709345, + |
| 1.93e-94 | FFCP PHASE2:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1ba | p7@PMEL |
| 1.93e-94 | FFCP PHASE1:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1ba | p7@PMEL |
| 1.9e-89 | FFCP PHASE2:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8 | p8@PMEL |
| 1.9e-89 | FFCP PHASE1:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8 | p8@PMEL |
| 2.14e-89 | FFCP PHASE1:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661 | p9@PMEL |
| 2.14e-89 | FFCP PHASE2:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661 | p9@PMEL |
| 1.08e-87 | FFCP PHASE1:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5 | p1@SLC45A2 |
| 1.08e-87 | FFCP PHASE2:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5 | p1@SLC45A2 |
| 6.07e-87 | FFCP PHASE2:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905 | p3@RAB27A |
| 6.07e-87 | FFCP PHASE1:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905 | p3@RAB27A |
| 5.51e-86 | FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23 | p2@AK129493 |
| 5.51e-86 | FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23 | p8@MFSD12 |
| 5.51e-86 | FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23 | p2@AK129493 |
| 5.51e-86 | FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23 | p8@MFSD12 |
| 6.25e-86 | FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703 | p22@TYRP1 |
| 6.25e-86 | FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703 | p12@uc003lyl.3 |
| 6.25e-86 | FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703 | p19@TYRP1 |
| 6.25e-86 | FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703 | p@chr9:12704349..12704362, + |
| 6.25e-86 | FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703 | p27@TYRP1 |
| 6.25e-86 | FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703 | p22@TYRP1 |
| 6.25e-86 | FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703 | p12@uc003lyl.3 |
| 6.25e-86 | FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703 | p@chr9:12704349..12704362, + |
| 6.25e-86 | FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703 | p27@TYRP1 |
| 6.25e-86 | FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703 | p19@TYRP1 |
| 7.09e-86 | FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fed | p@chr9:12704539..12704547, + |
| 7.09e-86 | FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fed | p2@OCA2 |
| 7.09e-86 | FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fed | p@chr9:12704539..12704547, + |
| 7.09e-86 | FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fed | p2@OCA2 |
| 8.04e-86 | FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faa | p36@TYRP1 |
| 8.04e-86 | FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faa | p36@TYRP1 |
| 9.12e-86 | FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309 | p@chr12:56351078..56351092, - |
| 9.12e-86 | FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309 | p@chr12:56351078..56351092, - |
| 2.84e-84 | FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12704666..12704671, + |
| 2.84e-84 | FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43 | p@chr15:28360793..28360804, - |
| 2.84e-84 | FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43 | p3@AK129493 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43 | p@chr3:69951861..69951868, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43 | p@chr1:212594718..212594723, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43 | p@chr17:77923816..77923828, - |
| 2.84e-84 | FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43 | p39@LIMS2 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43 | p4@AK129493 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43 | p41@MED15 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12709019..12709029, + |
| 2.84e-84 | FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43 | p@chr17:77923816..77923828, - |
| 2.84e-84 | FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12709200..12709209, + |
| 2.84e-84 | FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43 | p9@MFSD12 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43 | p@chr3:69951861..69951868, + |
| 2.84e-84 | FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43 | p@chr1:212594718..212594723, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43 | p16@CAPN3 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43 | p39@LIMS2 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43 | p4@AK129493 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43 | p@chr15:28360857..28360860, - |
| 2.84e-84 | FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43 | p34@TYRP1 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43 | p2@ENST00000380106 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43 | p13@SLC22A18 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43 | p13@SLC22A18 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12709019..12709029, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12704666..12704671, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43 | p@chr15:28360793..28360804, - |
| 2.84e-84 | FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43 | p34@TYRP1 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43 | p2@ENST00000380106 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43 | p3@AK129493 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43 | p16@CAPN3 |
| 2.84e-84 | FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43 | p@chr11:48066945..48066951, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43 | p@chr9:12709200..12709209, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43 | p@chr11:48066945..48066951, + |
| 2.84e-84 | FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43 | p@chr17:77925869..77925876, - |
| 2.84e-84 | FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43 | p41@MED15 |
| 2.84e-84 | FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43 | p@chr15:28360857..28360860, - |
| 2.84e-84 | FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43 | p@chr17:77925869..77925876, - |
| 2.84e-84 | FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43 | p9@MFSD12 |
| 1.19e-81 | FFCP PHASE2:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083 | p@chr12:56350929..56350943, - |
| 1.19e-81 | FFCP PHASE1:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083 | p@chr12:56350929..56350943, - |
