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{{CL
{{CL
|id=CL:0000359
|alt_id=
|name=vascular associated smooth muscle cell
|namespace=cell
|def="A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm]
|xref=
|is_a=CL:0000192
|synonym="vascular smooth muscle cell" EXACT [];;"VSMC" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000359
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=vascular associated smooth muscle cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002049
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="vascular smooth muscle cell" EXACT [];;"VSMC" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:33, 12 September 2014

Name:vascular associated smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm]
Synonyms: "vascular smooth muscle cell" EXACT []
"VSMC" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0002049(vasculature)



Children


is a:CL:0002539 (aortic smooth muscle cell),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002589 (smooth muscle cell of the brachiocephalic vasculature),CL:0002590 (smooth muscle cell of the brain vasculature),CL:0002591 (smooth muscle cell of the pulmonary artery),CL:0002592 (smooth muscle cell of the coronary artery),CL:0002594 (smooth muscle cell of the umbilical artery),CL:0002595 (smooth muscle cell of the subclavian artery),CL:0002596 (smooth muscle cell of the carotid artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results Mouse (Mus musculus)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000359 (vascular associated smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.38e-95FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_9ab53d05419d0af5bf33aed6e36051c6p@chr6:53359400..53359406, +
5.38e-95FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_9ab53d05419d0af5bf33aed6e36051c6p@chr6:53359400..53359406, +
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_a0f90605a77bcc42b09e129dc098421dp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_a0f90605a77bcc42b09e129dc098421dp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_a0f90605a77bcc42b09e129dc098421dp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_a0f90605a77bcc42b09e129dc098421dp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_a0f90605a77bcc42b09e129dc098421dp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_a0f90605a77bcc42b09e129dc098421dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_a0f90605a77bcc42b09e129dc098421dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_a0f90605a77bcc42b09e129dc098421dp5@Adamts2
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_a0f90605a77bcc42b09e129dc098421dp5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_a0f90605a77bcc42b09e129dc098421dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_a0f90605a77bcc42b09e129dc098421dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_a0f90605a77bcc42b09e129dc098421dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_a0f90605a77bcc42b09e129dc098421dp@chr2:112043522..112043530, -
2.3e-72FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_60ffac95fdd82899c361bef5158ed515p@chr4:74703497..74703511, +
2.3e-72FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_60ffac95fdd82899c361bef5158ed515p@chr4:74703497..74703511, +
3.38e-72FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_3d0bdc305f01acc9779f43f83eedc906p@chr4:7846444..7846449, -
3.38e-72FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_3d0bdc305f01acc9779f43f83eedc906p@chr4:7846444..7846449, -
8.96e-67FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_f6d8802bbb533f518d4b74fd31ae3b6ap@chr11:102661517..102661541, -
8.96e-67FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_f6d8802bbb533f518d4b74fd31ae3b6ap@chr11:102661517..102661541, -
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_2e9b248b59526b8d37b7263b96780175p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_2e9b248b59526b8d37b7263b96780175p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_2e9b248b59526b8d37b7263b96780175p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_2e9b248b59526b8d37b7263b96780175p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_2e9b248b59526b8d37b7263b96780175p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_2e9b248b59526b8d37b7263b96780175p6@Npy1r
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_2e9b248b59526b8d37b7263b96780175p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_2e9b248b59526b8d37b7263b96780175p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_2e9b248b59526b8d37b7263b96780175p@chrX:160840025..160840037, +
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_5866c60d8be3f7cc97427622e317e0ccp1@ENSMUST00000150529
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_5866c60d8be3f7cc97427622e317e0ccp1@ENSMUST00000150529
2.31e-64FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_bbd24c603ba84263ec3989d49216a742p@chr2:134548872..134548879, -
2.31e-64FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_bbd24c603ba84263ec3989d49216a742p@chr2:134548872..134548879, -
7.84e-64FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_bda5c86ef80f11ad326ac731baf6c3b3p@chr4:74703963..74703975, +
7.84e-64FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_bda5c86ef80f11ad326ac731baf6c3b3p@chr4:74703963..74703975, +
3.26e-60FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_2ac31ea89e8d660eed5df217b4db83f2p@chr3:106484411..106484418, +
3.26e-60FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_2ac31ea89e8d660eed5df217b4db83f2p@chr3:106484411..106484418, +
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp8@Vit
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp12@Gpr39
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp8@Vit
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr8:69857155..69857159, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_f8f3e3e47884a9cdc5a0113dff8c29fcp@chr10:96946110..96946113, +
7.95e-58FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_de2d77139faed1fd606be91901dbbc32p3@CXCL6
7.95e-58FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_de2d77139faed1fd606be91901dbbc32p3@CXCL6
2.3e-56FFCP PHASE1:Hg19::chr11:102661008..102661029,-#_a42b79300800b4827977fb1c49290c2dp@chr11:102661008..102661029, -
2.3e-56FFCP PHASE2:Hg19::chr11:102661008..102661029,-#_a42b79300800b4827977fb1c49290c2dp@chr11:102661008..102661029, -
2.36e-55FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_f6a65b35be9dcbee70bb5cfea0b0a408p@chr8:90556171..90556173, +
2.36e-55FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_f6a65b35be9dcbee70bb5cfea0b0a408p@chr8:90556171..90556173, +
3.26e-55FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_aa33e114ca55a403d596be06faec69bbp8@MICAL2
3.26e-55FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_aa33e114ca55a403d596be06faec69bbp8@MICAL2
1.96e-53FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_839cdf666b4a5e7b9c899024fa92f40ep4@ARHGAP22
1.96e-53FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_839cdf666b4a5e7b9c899024fa92f40ep4@ARHGAP22
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_96f42b384acb46afe83ca4ff9b594f15p5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_96f42b384acb46afe83ca4ff9b594f15p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_96f42b384acb46afe83ca4ff9b594f15p5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_96f42b384acb46afe83ca4ff9b594f15p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_96f42b384acb46afe83ca4ff9b594f15p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_96f42b384acb46afe83ca4ff9b594f15p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_96f42b384acb46afe83ca4ff9b594f15p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_96f42b384acb46afe83ca4ff9b594f15p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_96f42b384acb46afe83ca4ff9b594f15p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_96f42b384acb46afe83ca4ff9b594f15p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_96f42b384acb46afe83ca4ff9b594f15p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_96f42b384acb46afe83ca4ff9b594f15p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_96f42b384acb46afe83ca4ff9b594f15p@chr14:24251717..24251731, +
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_91163fccf0d053cf86fd2e19a2d6cb4dp11@Svep1
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_91163fccf0d053cf86fd2e19a2d6cb4dp11@Svep1
8.3e-53FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_f657530c5b76afa3d385f7bca11b5900p@chr22:21138313..21138336, +
8.3e-53FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_f657530c5b76afa3d385f7bca11b5900p@chr22:21138313..21138336, +
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_2cfddd2790937b7964de5402122fc7a9p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_2cfddd2790937b7964de5402122fc7a9p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_db00ec93d7f736f48c7c94db79e5d5ffp5@Phlda3
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_db00ec93d7f736f48c7c94db79e5d5ffp5@Phlda3
2.71e-52FFCP PHASE1:Hg19::chr4:74736382..74736398,+#_2ef6f9ce46b8c0a8905593bfdccac379p@chr4:74736382..74736398, +
2.71e-52FFCP PHASE2:Hg19::chr4:74736382..74736398,+#_2ef6f9ce46b8c0a8905593bfdccac379p@chr4:74736382..74736398, +

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