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{{DOID
{{DOID
|id=DOID:3905
|alt_id=
|name=lung carcinoma
|namespace=disease_ontology
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
|is_a=DOID:1324
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3905
|is_a=DOID:1324
|is_obsolete=
|located_in=
|located_in=
|name=lung carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|union_of=
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_ff13f51a990286586a726a44f2e602cap@chr13:25269257..25269262, +
2.62e-23FFCP PHASE2:Hg19::chr7:120381610..120381618,+#_ff13f51a990286586a726a44f2e602cap@chr7:120381610..120381618, +
2.62e-23FFCP PHASE2:Hg19::chr2:97626185..97626188,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626185..97626188, -
2.62e-23FFCP PHASE2:Hg19::chr11:20538015..20538023,-#_ff13f51a990286586a726a44f2e602cap@chr11:20538015..20538023, -
2.62e-23FFCP PHASE1:Hg19::chr4:41749788..41749795,-#_ff13f51a990286586a726a44f2e602cap10@PHOX2B
2.62e-23FFCP PHASE2:Hg19::chr7:95766200..95766209,-#_ff13f51a990286586a726a44f2e602cap@chr7:95766200..95766209, -
2.62e-23FFCP PHASE2:Hg19::chr4:6324309..6324314,-#_ff13f51a990286586a726a44f2e602cap43@PPP2R2C
2.62e-23FFCP PHASE2:Hg19::chr2:222160741..222160750,+#_ff13f51a990286586a726a44f2e602cap@chr2:222160741..222160750, +
2.62e-23FFCP PHASE2:Hg19::chr2:103235132..103235142,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235132..103235142, +
2.62e-23FFCP PHASE2:Hg19::chr13:76688920..76688924,+#_ff13f51a990286586a726a44f2e602cap@chr13:76688920..76688924, +
2.62e-23FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000420691
2.62e-23FFCP PHASE1:Hg19::chr18:6928495..6928520,-#_ff13f51a990286586a726a44f2e602cap2@LOC400643
2.62e-23FFCP PHASE2:Hg19::chr11:69640133..69640140,+#_ff13f51a990286586a726a44f2e602cap@chr11:69640133..69640140, +
2.62e-23FFCP PHASE1:Hg19::chr7:26590606..26590616,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590606..26590616, -
2.62e-23FFCP PHASE1:Hg19::chr12:79756349..79756364,-#_ff13f51a990286586a726a44f2e602cap@chr12:79756349..79756364, -
2.62e-23FFCP PHASE2:Hg19::chr6:45399278..45399287,+#_ff13f51a990286586a726a44f2e602cap@chr6:45399278..45399287, +
2.62e-23FFCP PHASE2:Hg19::chr19:46531064..46531073,+#_ff13f51a990286586a726a44f2e602cap@chr19:46531064..46531073, +
2.62e-23FFCP PHASE1:Hg19::chrX:135761931..135761934,-#_ff13f51a990286586a726a44f2e602cap@chrX:135761931..135761934, -
2.62e-23FFCP PHASE1:Hg19::chr10:29212181..29212188,+#_ff13f51a990286586a726a44f2e602cap@chr10:29212181..29212188, +
2.62e-23FFCP PHASE2:Hg19::chr7:68735078..68735090,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735078..68735090, +
2.62e-23FFCP PHASE2:Hg19::chr17:79974020..79974025,+#_ff13f51a990286586a726a44f2e602cap@chr17:79974020..79974025, +
2.62e-23FFCP PHASE1:Hg19::chr14:57127818..57127825,+#_ff13f51a990286586a726a44f2e602cap@chr14:57127818..57127825, +
2.62e-23FFCP PHASE1:Hg19::chr7:120383546..120383560,+#_ff13f51a990286586a726a44f2e602cap@chr7:120383546..120383560, +
2.62e-23FFCP PHASE2:Hg19::chr5:28571974..28571978,-#_ff13f51a990286586a726a44f2e602cap@chr5:28571974..28571978, -
2.62e-23FFCP PHASE2:Hg19::chr2:220594691..220594695,+#_ff13f51a990286586a726a44f2e602cap4@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr18:33311016..33311032,-#_ff13f51a990286586a726a44f2e602cap@chr18:33311016..33311032, -
2.62e-23FFCP PHASE2:Hg19::chr12:40426483..40426524,-#_ff13f51a990286586a726a44f2e602cap@chr12:40426483..40426524, -
2.62e-23FFCP PHASE1:Hg19::chr8:72275738..72275747,-#_ff13f51a990286586a726a44f2e602cap@chr8:72275738..72275747, -
2.62e-23FFCP PHASE1:Hg19::chr6:22113639..22113643,+#_ff13f51a990286586a726a44f2e602cap@chr6:22113639..22113643, +
2.62e-23FFCP PHASE1:Hg19::chr14:60194267..60194275,-#_ff13f51a990286586a726a44f2e602cap20@RTN1
2.62e-23FFCP PHASE2:Hg19::chr7:158225991..158225999,+#_ff13f51a990286586a726a44f2e602cap@chr7:158225991..158225999, +
2.62e-23FFCP PHASE2:Hg19::chr3:95401565..95401581,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000463799
2.62e-23FFCP PHASE2:Hg19::chr14:60194318..60194325,-#_ff13f51a990286586a726a44f2e602cap22@RTN1
2.62e-23FFCP PHASE2:Hg19::chr10:129704395..129704457,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704395..129704457, +
2.62e-23FFCP PHASE1:Hg19::chr8:116215608..116215615,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215608..116215615, +
2.62e-23FFCP PHASE2:Hg19::chr8:97961686..97961696,-#_ff13f51a990286586a726a44f2e602cap@chr8:97961686..97961696, -
2.62e-23FFCP PHASE2:Hg19::chr6:125378772..125378777,+#_ff13f51a990286586a726a44f2e602cap@chr6:125378772..125378777, +
2.62e-23FFCP PHASE2:Hg19::chr3:150914241..150914244,+#_ff13f51a990286586a726a44f2e602cap@chr3:150914241..150914244, +
2.62e-23FFCP PHASE1:Hg19::chrX:10852011..10852021,-#_ff13f51a990286586a726a44f2e602cap27@MID1
2.62e-23FFCP PHASE1:Hg19::chr10:129704562..129704569,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704562..129704569, +
2.62e-23FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_ff13f51a990286586a726a44f2e602cap1@ENST00000418699, p1@ENST00000432330
2.62e-23FFCP PHASE1:Hg19::chr1:188874798..188874820,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000445072
2.62e-23FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_ff13f51a990286586a726a44f2e602cap@chr19:46763326..46763349, +
2.62e-23FFCP PHASE2:Hg19::chr4:157516018..157516023,+#_ff13f51a990286586a726a44f2e602cap@chr4:157516018..157516023, +
2.62e-23FFCP PHASE2:Hg19::chr16:7428243..7428259,+#_ff13f51a990286586a726a44f2e602cap@chr16:7428243..7428259, +
2.62e-23FFCP PHASE2:Hg19::chr12:84664596..84664600,+#_ff13f51a990286586a726a44f2e602cap@chr12:84664596..84664600, +
2.62e-23FFCP PHASE1:Hg19::chr6:145434485..145434492,+#_ff13f51a990286586a726a44f2e602cap@chr6:145434485..145434492, +
2.62e-23FFCP PHASE2:Hg19::chr6:154858693..154858698,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858693..154858698, +
2.62e-23FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_ff13f51a990286586a726a44f2e602cap@chr1:100110807..100110818, +
2.62e-23FFCP PHASE2:Hg19::chr2:202413051..202413061,-#_ff13f51a990286586a726a44f2e602cap@chr2:202413051..202413061, -
2.62e-23FFCP PHASE2:Hg19::chr18:10085799..10085809,+#_ff13f51a990286586a726a44f2e602cap@chr18:10085799..10085809, +
2.62e-23FFCP PHASE2:Hg19::chr17:39140424..39140431,-#_ff13f51a990286586a726a44f2e602cap4@KRT40
2.62e-23FFCP PHASE2:Hg19::chr12:15722105..15722121,+#_ff13f51a990286586a726a44f2e602cap@chr12:15722105..15722121, +
2.62e-23FFCP PHASE1:Hg19::chr5:33619084..33619089,-#_ff13f51a990286586a726a44f2e602cap@chr5:33619084..33619089, -
2.62e-23FFCP PHASE1:Hg19::chr2:97626580..97626585,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626580..97626585, -
2.62e-23FFCP PHASE1:Hg19::chr2:220594730..220594748,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000442416
2.62e-23FFCP PHASE1:Hg19::chr1:144618112..144618116,+#_ff13f51a990286586a726a44f2e602cap4@NBPF8
2.62e-23FFCP PHASE1:Hg19::chr18:37331745..37331763,-#_ff13f51a990286586a726a44f2e602cap@chr18:37331745..37331763, -
2.62e-23FFCP PHASE1:Hg19::chr14:58448696..58448733,-#_ff13f51a990286586a726a44f2e602cap9@SLC35F4
2.62e-23FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_ff13f51a990286586a726a44f2e602cap@chr13:76563913..76563916, +

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