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{{DOID
{{DOID
|id=DOID:3905
|name=lung carcinoma
|namespace=
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
|xref=
|is_a=DOID:1324
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|comment=
|alt_id=
|alt_id=
|disjoint_from=
|comment=OMIM mapping confirmed by DO. [SN].
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3905
|is_a=DOID:1324
|is_obsolete=
|located_in=
|located_in=
|name=lung carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|union_of=
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr2:103235329..103235342,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235329..103235342, +
2.62e-23FFCP PHASE2:Hg19::chr13:76755731..76755739,+#_ff13f51a990286586a726a44f2e602cap@chr13:76755731..76755739, +
2.62e-23FFCP PHASE1:Hg19::chr6:31681859..31681865,-#_ff13f51a990286586a726a44f2e602cap3@LY6G6E
2.62e-23FFCP PHASE1:Hg19::chr1:168756303..168756308,+#_ff13f51a990286586a726a44f2e602cap1@MGC4473
2.62e-23FFCP PHASE2:Hg19::chr8:116215335..116215378,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215335..116215378, +
2.62e-23FFCP PHASE1:Hg19::chr14:25326297..25326305,-#_ff13f51a990286586a726a44f2e602cap@chr14:25326297..25326305, -
2.62e-23FFCP PHASE2:Hg19::chr4:107955476..107955508,-#_ff13f51a990286586a726a44f2e602cap@chr4:107955476..107955508, -
2.62e-23FFCP PHASE2:Hg19::chr8:98065877..98065881,-#_ff13f51a990286586a726a44f2e602cap@chr8:98065877..98065881, -
2.62e-23FFCP PHASE2:Hg19::chr1:188861179..188861222,-#_ff13f51a990286586a726a44f2e602cap@chr1:188861179..188861222, -
2.62e-23FFCP PHASE1:Hg19::chr6:64762702..64762707,+#_ff13f51a990286586a726a44f2e602cap@chr6:64762702..64762707, +
2.62e-23FFCP PHASE1:Hg19::chr4:160189282..160189289,+#_ff13f51a990286586a726a44f2e602cap38@RAPGEF2
2.62e-23FFCP PHASE2:Hg19::chr7:68735137..68735150,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735137..68735150, +
2.62e-23FFCP PHASE2:Hg19::chr2:189756256..189756260,+#_ff13f51a990286586a726a44f2e602cap@chr2:189756256..189756260, +
2.62e-23FFCP PHASE1:Hg19::chr8:38459926..38459928,+#_ff13f51a990286586a726a44f2e602cap@chr8:38459926..38459928, +
2.62e-23FFCP PHASE1:Hg19::chr2:91776712..91776739,+#_ff13f51a990286586a726a44f2e602cap@chr2:91776712..91776739, +
2.62e-23FFCP PHASE1:Hg19::chr2:202413051..202413061,-#_ff13f51a990286586a726a44f2e602cap@chr2:202413051..202413061, -
2.62e-23FFCP PHASE1:Hg19::chr18:10085817..10085825,+#_ff13f51a990286586a726a44f2e602cap@chr18:10085817..10085825, +
2.62e-23FFCP PHASE2:Hg19::chr6:166582133..166582149,-#_ff13f51a990286586a726a44f2e602cap1@T
2.62e-23FFCP PHASE2:Hg19::chr2:97626375..97626385,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626375..97626385, -
2.62e-23FFCP PHASE1:Hg19::chr3:86701885..86701893,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701885..86701893, -
2.62e-23FFCP PHASE2:Hg19::chr7:95776211..95776254,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776211..95776254, -
2.62e-23FFCP PHASE2:Hg19::chr2:222160774..222160804,+#_ff13f51a990286586a726a44f2e602cap@chr2:222160774..222160804, +
2.62e-23FFCP PHASE1:Hg19::chr14:60194318..60194325,-#_ff13f51a990286586a726a44f2e602cap22@RTN1
2.62e-23FFCP PHASE1:Hg19::chr10:129704473..129704478,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704473..129704478, +
2.62e-23FFCP PHASE2:Hg19::chr7:158242968..158242975,+#_ff13f51a990286586a726a44f2e602cap@chr7:158242968..158242975, +
2.62e-23FFCP PHASE2:Hg19::chr3:95401928..95401936,-#_ff13f51a990286586a726a44f2e602cap3@ENST00000494840, p3@uc003dro.1
2.62e-23FFCP PHASE2:Hg19::chr1:168756079..168756087,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000420691
2.62e-23FFCP PHASE2:Hg19::chr14:60194446..60194457,-#_ff13f51a990286586a726a44f2e602cap16@RTN1
2.62e-23FFCP PHASE2:Hg19::chr10:129704512..129704515,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704512..129704515, +
2.62e-23FFCP PHASE2:Hg19::chr8:97964849..97964868,-#_ff13f51a990286586a726a44f2e602cap@chr8:97964849..97964868, -
2.62e-23FFCP PHASE2:Hg19::chr2:241625475..241625482,+#_ff13f51a990286586a726a44f2e602cap8@ENST00000407635
2.62e-23FFCP PHASE2:Hg19::chr14:88452922..88452929,-#_ff13f51a990286586a726a44f2e602cap@chr14:88452922..88452929, -
2.62e-23FFCP PHASE1:Hg19::chr2:33589897..33589917,+#_ff13f51a990286586a726a44f2e602cap@chr2:33589897..33589917, +
2.62e-23FFCP PHASE1:Hg19::chr19:46763803..46763808,-#_ff13f51a990286586a726a44f2e602cap@chr19:46763803..46763808, -
2.62e-23FFCP PHASE2:Hg19::chr8:129431377..129431384,-#_ff13f51a990286586a726a44f2e602cap@chr8:129431377..129431384, -
2.62e-23FFCP PHASE1:Hg19::chr10:66459172..66459188,-#_ff13f51a990286586a726a44f2e602cap@chr10:66459172..66459188, -
2.62e-23FFCP PHASE2:Hg19::chr21:16662950..16662957,-#_ff13f51a990286586a726a44f2e602cap@chr21:16662950..16662957, -
2.62e-23FFCP PHASE2:Hg19::chr16:83649482..83649491,+#_ff13f51a990286586a726a44f2e602cap@chr16:83649482..83649491, +
2.62e-23FFCP PHASE2:Hg19::chr12:84664687..84664694,+#_ff13f51a990286586a726a44f2e602cap4@ENST00000547882
2.62e-23FFCP PHASE1:Hg19::chr6:154710410..154710428,-#_ff13f51a990286586a726a44f2e602cap@chr6:154710410..154710428, -
2.62e-23FFCP PHASE1:Hg19::chr2:192805223..192805230,+#_ff13f51a990286586a726a44f2e602cap@chr2:192805223..192805230, +
2.62e-23FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_ff13f51a990286586a726a44f2e602cap@chr3:77129779..77129782, +
2.62e-23FFCP PHASE1:Hg19::chr15:96959907..96959930,+#_ff13f51a990286586a726a44f2e602cap@chr15:96959907..96959930, +
2.62e-23FFCP PHASE1:Hg19::chr12:40426483..40426524,-#_ff13f51a990286586a726a44f2e602cap@chr12:40426483..40426524, -
2.62e-23FFCP PHASE1:Hg19::chr11:42142040..42142055,+#_ff13f51a990286586a726a44f2e602cap@chr11:42142040..42142055, +
2.62e-23FFCP PHASE2:Hg19::chr5:33619040..33619056,-#_ff13f51a990286586a726a44f2e602cap@chr5:33619040..33619056, -
2.62e-23FFCP PHASE2:Hg19::chr4:41749788..41749795,-#_ff13f51a990286586a726a44f2e602cap10@PHOX2B
2.62e-23FFCP PHASE2:Hg19::chr2:220594710..220594720,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr12:41194014..41194019,+#_ff13f51a990286586a726a44f2e602cap@chr12:41194014..41194019, +
2.62e-23FFCP PHASE1:Hg19::chr5:79097476..79097484,+#_ff13f51a990286586a726a44f2e602cap@chr5:79097476..79097484, +
2.62e-23FFCP PHASE1:Hg19::chr3:115898365..115898379,+#_ff13f51a990286586a726a44f2e602cap@chr3:115898365..115898379, +
2.62e-23FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_ff13f51a990286586a726a44f2e602cap12@CLEC16A
2.62e-23FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_ff13f51a990286586a726a44f2e602cap13@CPXM1
2.62e-23FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_ff13f51a990286586a726a44f2e602cap@chr17:63511856..63511858, -
2.62e-23FFCP PHASE1:Hg19::chr16:50553120..50553126,-#_ff13f51a990286586a726a44f2e602cap@chr16:50553120..50553126, -
2.62e-23FFCP PHASE2:Hg19::chr2:23850222..23850227,+#_ff13f51a990286586a726a44f2e602cap@chr2:23850222..23850227, +
2.62e-23FFCP PHASE1:Hg19::chr8:98014001..98014041,-#_ff13f51a990286586a726a44f2e602cap@chr8:98014001..98014041, -
2.62e-23FFCP PHASE1:Hg19::chr2:241625621..241625629,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000407635
2.62e-23FFCP PHASE2:Hg19::chr5:134907210..134907215,-#_ff13f51a990286586a726a44f2e602cap@chr5:134907210..134907215, -
2.62e-23FFCP PHASE2:Hg19::chr12:79756320..79756329,-#_ff13f51a990286586a726a44f2e602cap@chr12:79756320..79756329, -

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