Personal tools

UBERON:0000020: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000020
|alt_id=
|name=sense organ
|namespace=
|def="An organ that is part of a sense organ system." [UBERON:cjm]
|xref=AEO:0000094;;BTO:0000202;;EHDAA2:0001824;;EHDAA:500;;EMAPA:16192;;FBbt:00005155;;GAID:63;;HAO:0000930;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png;;MA:0000017;;MESH:A.09;;ncithesaurus:Organ_of_the_Special_Sense;;SCTID:244485009;;VHOG:0001407;;WBbt:0006929
|is_a=UBERON:0000062
|synonym="organ of sense organ system" EXACT [OBOL:automatic];;"organ of sensory organ system" EXACT [OBOL:automatic];;"organ of sensory system" EXACT [OBOL:automatic];;"sense organ system organ" EXACT [OBOL:automatic];;"sensillum" NARROW [WBbt:0006929];;"sensor" RELATED [];;"sensory organ" EXACT [];;"sensory organ system organ" EXACT [OBOL:automatic];;"sensory system organ" EXACT [OBOL:automatic];;"Sinnesorgan" RELATED [BTO:0000202]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that is part of a sense organ system." [UBERON:cjm]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000020
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=sense organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001032
|part_of=UBERON:0001032
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="organ of sense organ system" EXACT [OBOL:automatic];;"organ of sensory organ system" EXACT [OBOL:automatic];;"organ of sensory system" EXACT [OBOL:automatic];;"sense organ system organ" EXACT [OBOL:automatic];;"sensillum" NARROW [WBbt:0006929];;"sensor" RELATED [];;"sensory organ" EXACT [];;"sensory organ system organ" EXACT [OBOL:automatic];;"sensory system organ" EXACT [OBOL:automatic];;"Sinnesorgan" RELATED [BTO:0000202]
|union_of=
|xref=AEO:0000094;;BTO:0000202;;EHDAA2:0001824;;EHDAA:500;;EMAPA:16192;;FBbt:00005155;;GAID:63;;HAO:0000930;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png;;MA:0000017;;MESH:A.09;;ncithesaurus:Organ_of_the_Special_Sense;;SCTID:244485009;;VHOG:0001407;;WBbt:0006929
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:sense organ
Namespace:FANTOM
Definition:"An organ that is part of a sense organ system." [UBERON:cjm]
Xrefs:
links:

AEO:0000094
BTO:0000202
EHDAA2:0001824
EHDAA:500
EMAPA:16192
FBbt:00005155
GAID:63
HAO:0000930
[ 200px-Gray722.png 200px-Gray722.png]
MA:0000017
MESH:A.09
ncithesaurus:Organ_of_the_Special_Sense
SCTID:244485009
VHOG:0001407

WBbt:0006929
Synonyms: "organ of sense organ system" EXACT [OBOL:automatic]
"organ of sensory organ system" EXACT [OBOL:automatic]
"organ of sensory system" EXACT [OBOL:automatic]
"sense organ system organ" EXACT [OBOL:automatic]
"sensillum" NARROW [WBbt:0006929]
"sensor" RELATED []
"sensory organ" EXACT []
"sensory organ system organ" EXACT [OBOL:automatic]
"sensory system organ" EXACT [OBOL:automatic]
"Sinnesorgan" RELATED [BTO:0000202]
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0001032(sensory system)



Children

is a:UBERON:0000970 (eye),UBERON:0001690 (ear),UBERON:0001723 (tongue),UBERON:0002227 (spiral organ of cochlea),UBERON:0002268 (olfactory organ),UBERON:0004637 (otic capsule),UBERON:0010230 (eyeball of camera-type eye)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000020 (sense organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.42e-69FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_307f254ee2c7ea454828e9ec745386b9p10@SIX3
4.42e-69FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_307f254ee2c7ea454828e9ec745386b9p10@SIX3
5.33e-65FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31815126..31815139, -
5.33e-65FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_3e8ed763c6bdc0e31bd24fc54536d581p5@Zfp365
5.33e-65FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:77532283..77532316, -
5.33e-65FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_3e8ed763c6bdc0e31bd24fc54536d581p1@Mir184
5.33e-65FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr16:21743134..21743139, -
5.33e-65FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_3e8ed763c6bdc0e31bd24fc54536d581p8@Osbp2
5.33e-65FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr3:129525389..129525400, -
5.33e-65FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31815126..31815139, -
5.33e-65FFCP PHASE1:Mm9::chr11:5876195..5876219,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:5876195..5876219, -
5.33e-65FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31818106..31818119, +
5.33e-65FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr3:129525389..129525400, -
5.33e-65FFCP PHASE2:Mm9::chr11:5876195..5876219,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:5876195..5876219, -
5.33e-65FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31817987..31818013, +
5.33e-65FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31818263..31818276, +
5.33e-65FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_3e8ed763c6bdc0e31bd24fc54536d581p3@Osbp2
5.33e-65FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:77532391..77532408, -
5.33e-65FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_3e8ed763c6bdc0e31bd24fc54536d581p4@Dct
5.33e-65FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_3e8ed763c6bdc0e31bd24fc54536d581p4@Dct
5.33e-65FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31817987..31818013, +
5.33e-65FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_3e8ed763c6bdc0e31bd24fc54536d581p1@Mir184
5.33e-65FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_3e8ed763c6bdc0e31bd24fc54536d581p6@Celf1
5.33e-65FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_3e8ed763c6bdc0e31bd24fc54536d581p8@Osbp2
5.33e-65FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_3e8ed763c6bdc0e31bd24fc54536d581p6@Celf1
5.33e-65FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr10:127668442..127668453, +
5.33e-65FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:77532391..77532408, -
5.33e-65FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31818106..31818119, +
5.33e-65FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_3e8ed763c6bdc0e31bd24fc54536d581p5@Zfp365
5.33e-65FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr10:127668442..127668453, +
5.33e-65FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_3e8ed763c6bdc0e31bd24fc54536d581p3@Osbp2
5.33e-65FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_3e8ed763c6bdc0e31bd24fc54536d581p1@E130218I03Rik
5.33e-65FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_3e8ed763c6bdc0e31bd24fc54536d581p@chr17:31818263..31818276, +
5.33e-65FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr11:77532283..77532316, -
5.33e-65FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_3e8ed763c6bdc0e31bd24fc54536d581p@chr16:21743134..21743139, -
5.33e-65FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_3e8ed763c6bdc0e31bd24fc54536d581p1@E130218I03Rik
7.33e-60FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_7487f95bebf004314f7491e4e7567fadp1@ENST00000456467
7.33e-60FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_7487f95bebf004314f7491e4e7567fadp1@ENST00000456467
9.27e-59FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_5b6e1fcbf326ed22204afda7d2cb3d12p3@LOC100504989, p3@Timeless
9.27e-59FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_5b6e1fcbf326ed22204afda7d2cb3d12p@chr7:64675015..64675028, +
9.27e-59FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_5b6e1fcbf326ed22204afda7d2cb3d12p3@LOC100504989, p3@Timeless
9.27e-59FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_5b6e1fcbf326ed22204afda7d2cb3d12p@chr7:64675015..64675028, +
1.08e-58FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_979bff8c42323e8a3a93154f612638d5p6@Pax6
1.08e-58FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_979bff8c42323e8a3a93154f612638d5p@chr6:97891135..97891147, +
1.08e-58FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_979bff8c42323e8a3a93154f612638d5p@chr6:97891135..97891147, +
1.08e-58FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_979bff8c42323e8a3a93154f612638d5p6@Pax6
1.26e-58FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_ef4b2cda3bea49aa2a5f543128ce6dd8p1@4933429O19Rik
1.26e-58FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_ef4b2cda3bea49aa2a5f543128ce6dd8p1@4933429O19Rik
3.92e-58FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_f2a553deb516cb1d920036e9c5cc218cp1@ENST00000448923
3.92e-58FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_f2a553deb516cb1d920036e9c5cc218cp1@ENST00000448923
5.97e-58FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_e71959c7dcdabc412f23078e80805186p11@SIX3
5.97e-58FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_e71959c7dcdabc412f23078e80805186p11@SIX3
7.26e-58FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_57338d7655c57a304efa288c52c6529bp1@Gm4792
7.26e-58FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_57338d7655c57a304efa288c52c6529bp@chr5:112686483..112686494, +
7.26e-58FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_57338d7655c57a304efa288c52c6529bp1@Opn4
7.26e-58FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_57338d7655c57a304efa288c52c6529bp@chr5:112698505..112698537, -
7.26e-58FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_57338d7655c57a304efa288c52c6529bp@chr1:65147201..65147212, -
7.26e-58FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_57338d7655c57a304efa288c52c6529bp1@Rpgrip1
7.26e-58FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_57338d7655c57a304efa288c52c6529bp@chr1:65147224..65147236, -
7.26e-58FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_57338d7655c57a304efa288c52c6529bp@chr10:127668480..127668491, +
7.26e-58FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_57338d7655c57a304efa288c52c6529bp1@ENSMUST00000173365
7.26e-58FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_57338d7655c57a304efa288c52c6529bp1@Impg2
7.26e-58FFCP PHASE2:Mm9::chr6:3944001..3944016,+#_57338d7655c57a304efa288c52c6529bp1@Gngt1
7.26e-58FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_57338d7655c57a304efa288c52c6529bp1@ENSMUST00000173365
7.26e-58FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_57338d7655c57a304efa288c52c6529bp1@Impg2
7.26e-58FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_57338d7655c57a304efa288c52c6529bp@chr5:113507470..113507483, -
7.26e-58FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_57338d7655c57a304efa288c52c6529bp@chr5:113507470..113507483, -
7.26e-58FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_57338d7655c57a304efa288c52c6529bp@chr17:31817947..31817965, +
7.26e-58FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_57338d7655c57a304efa288c52c6529bp@chr5:112686483..112686494, +
7.26e-58FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_57338d7655c57a304efa288c52c6529bp@chr5:113506006..113506025, -
7.26e-58FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_57338d7655c57a304efa288c52c6529bp@chr5:112675556..112675574, -
7.26e-58FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_57338d7655c57a304efa288c52c6529bp2@Cryga
7.26e-58FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_57338d7655c57a304efa288c52c6529bp@chr5:112696408..112696421, -
7.26e-58FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_57338d7655c57a304efa288c52c6529bp11@Rnf123
7.26e-58FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_57338d7655c57a304efa288c52c6529bp2@Hsd17b12
7.26e-58FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_57338d7655c57a304efa288c52c6529bp@chr5:112690963..112690994, +
7.26e-58FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_57338d7655c57a304efa288c52c6529bp@chr5:113504891..113504916, -
7.26e-58FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_57338d7655c57a304efa288c52c6529bp@chr1:38092602..38092616, +
7.26e-58FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_57338d7655c57a304efa288c52c6529bp@chr5:113506190..113506202, -
7.26e-58FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_57338d7655c57a304efa288c52c6529bp3@Gngt2
7.26e-58FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_57338d7655c57a304efa288c52c6529bp@chr5:112675556..112675574, -
7.26e-58FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_57338d7655c57a304efa288c52c6529bp3@Gngt2
7.26e-58FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_57338d7655c57a304efa288c52c6529bp@chr1:38092538..38092550, +
7.26e-58FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_57338d7655c57a304efa288c52c6529bp@chr1:65147224..65147236, -
7.26e-58FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_57338d7655c57a304efa288c52c6529bp6@Fbxo27
7.26e-58FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_57338d7655c57a304efa288c52c6529bp@chr5:112691047..112691066, +
7.26e-58FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_57338d7655c57a304efa288c52c6529bp@chr5:112692580..112692595, +
7.26e-58FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_57338d7655c57a304efa288c52c6529bp@chr14:49501519..49501530, -
7.26e-58FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_57338d7655c57a304efa288c52c6529bp@chr5:113506190..113506202, -
7.26e-58FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_57338d7655c57a304efa288c52c6529bp@chr1:65146997..65147021, -
7.26e-58FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_57338d7655c57a304efa288c52c6529bp@chr5:112690729..112690741, +
7.26e-58FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_57338d7655c57a304efa288c52c6529bp@chr8:77582172..77582183, +
7.26e-58FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_57338d7655c57a304efa288c52c6529bp6@Fbxo27
7.26e-58FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_57338d7655c57a304efa288c52c6529bp1@Rpgrip1
7.26e-58FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_57338d7655c57a304efa288c52c6529bp@chr5:112681470..112681483, -
7.26e-58FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_57338d7655c57a304efa288c52c6529bp@chr17:31817947..31817965, +
7.26e-58FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_57338d7655c57a304efa288c52c6529bp4@LOC100504989, p4@Timeless
7.26e-58FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_57338d7655c57a304efa288c52c6529bp@chr17:31818629..31818644, +
7.26e-58FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_57338d7655c57a304efa288c52c6529bp1@Rrh
7.26e-58FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_57338d7655c57a304efa288c52c6529bp@chr15:36655026..36655032, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000020&oldid=3277035"