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UBERON:0000045: Difference between revisions

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|located_in=
|located_in=
|name=ganglion
|name=ganglion
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016

Latest revision as of 17:04, 12 September 2014

Name:ganglion
Namespace:FANTOM
Definition:"A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion]
Xrefs:
links:

AAO:0010426
AEO:0000135
BTO:0000497
EFO:0000899
EHDAA2:0003135
EHDAA:2897
EHDAA:4662
EHDAA:5621
EHDAA:918
EV:0100372
FBbt:00005137
FMA:5884
MA:0002406
MAT:0000207
MAT:0000343
MESH:A.08.340
MIAA:0000207
MIAA:0000343
ncithesaurus:Ganglion
NIF_GrossAnatomy:nlx_anat_100302
TAO:0000190
TGMA:0001016
VHOG:0000156
WBbt:0005189
XAO:0000209

ZFA:0000190
Synonyms: "ganglia" RELATED []
"neural ganglion" RELATED [BTO:0000497]
Comments:TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com).
Alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003714(neural tissue)
disjoint_from:UBERON:0002420(basal ganglion)
develops_from:UBERON:0003869(presumptive ganglion)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0001714 (cranial ganglion),UBERON:0003338 (ganglion of peripheral nervous system)
part of:FF:0000186 (sympathetic ganglia)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000045 (ganglion), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.