UBERON:0000991: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000991
|name=gonad
|namespace=
|def="Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad,...") |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413 | ||
|comment=FMA xref is a 'general anatomical term' | |comment=FMA xref is a 'general anatomical term' | ||
|created_by= | |created_by= | ||
| | |def="Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0005564 | |develops_from=UBERON:0005564 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000991 | |||
|is_a=UBERON:0003133 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0000990 | |name=gonad | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |namespace=FANTOM | ||
|obo_creation_date= | |||
|part_of=UBERON:0000990 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string;;UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string | |||
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core | |||
|synonym="gonada" EXACT [] | |||
|union_of= | |||
|xref=AAO:0000213;;BILA:0000123;;BTO:0000534;;EMAPA:17383;;FBbt:00004858;;FMA:18250;;GAID:368;;HAO:0000379;;MA:0002420;;MESH:A.05.360.576;;ncithesaurus:Gonad;;OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA;;SCTID:304623008;;TAO:0000413;;VHOG:0000397;;WBbt:0005175;;XAO:0003146;;ZFA:0000413 | |||
}} | }} | ||
Latest revision as of 17:13, 12 September 2014
| Name: | gonad | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "gonada" EXACT [] | ||
| Comments: | FMA xref is a 'general anatomical term' | ||
| Alt_id: | UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413 | ||
| Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003133(reproductive organ) |
|---|---|
| develops_from: | UBERON:0005564(gonad primordium) |
| part_of: | UBERON:0000990(reproductive system) |
Children
| is a: | UBERON:0000473 (testis),UBERON:0000992 (female gonad),UBERON:0009117 (indifferent gonad) |
|---|---|
| derives from: | FF:0011282 (mouse gonad- embryo E13 sample) |
| part of: | UBERON:0004909 (epithelium of gonad) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10020-101D2 (ovary, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10693-109F9 (serous cystadenocarcinoma cell line:HTOA)
- 10757-110E1
- 10780-110G6
... further results Mouse (Mus musculus)
- 10020-101D2 (ovary, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10693-109F9 (serous cystadenocarcinoma cell line:HTOA)
- 10757-110E1
- 10780-110G6
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000991 (gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.75e-64 | FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_99caf2582c0b4aed5a3eff985a1635a5 | p7@Tulp2 |
| 6.75e-64 | FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_99caf2582c0b4aed5a3eff985a1635a5 | p7@Tulp2 |
| 1.36e-62 | FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_e520b7855570e7591e70702643c8ce4f | p2@Slc25a31 |
| 1.36e-62 | FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_e520b7855570e7591e70702643c8ce4f | p2@Slc25a31 |
| 1.69e-62 | FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_315168cbf1644941757d214501692eb3 | p1@Asz1 |
| 1.69e-62 | FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_315168cbf1644941757d214501692eb3 | p1@Asz1 |
| 2.43e-62 | FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_3d15f4f8bad301673b7b1691bc39686d | p@chr12:31775417..31775434, - |
| 2.43e-62 | FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_3d15f4f8bad301673b7b1691bc39686d | p@chr12:31775417..31775434, - |
| 6.68e-62 | FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_3b5aaccbffe883066081dc929ac8b891 | p6@Folr1 |
| 6.68e-62 | FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_3b5aaccbffe883066081dc929ac8b891 | p6@Folr1 |
| 4.74e-60 | FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_0d37f8f0421295a08c079d067c0c66ec | p1@Mov10l1 |
| 4.74e-60 | FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_0d37f8f0421295a08c079d067c0c66ec | p1@Mov10l1 |
| 1.66e-59 | FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_4ea8054fc0f4210dcc0f6a31a681d1e7 | p1@Sycp1 |
| 1.66e-59 | FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_4ea8054fc0f4210dcc0f6a31a681d1e7 | p1@Sycp1 |
| 7.89e-59 | FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_c9cf2068d39691c83732a9f3093708f7 | p2@Asz1 |
| 7.89e-59 | FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_c9cf2068d39691c83732a9f3093708f7 | p2@Asz1 |
| 4.05e-58 | FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_bc60249c04882f588853780f7e537d68 | p4@STAR |
| 4.05e-58 | FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_bc60249c04882f588853780f7e537d68 | p4@STAR |
| 5.06e-58 | FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_3c2b0ca4bbc7dfd772ed6fbf124b3b62 | p@chr15:102277099..102277126, + |
| 5.06e-58 | FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_3c2b0ca4bbc7dfd772ed6fbf124b3b62 | p@chr15:102277099..102277126, + |
| 5.18e-58 | FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_4a05efd1d49c534220a4065c7bfebfc8 | p1@Mael |
| 5.18e-58 | FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_4a05efd1d49c534220a4065c7bfebfc8 | p1@Mael |
| 1.46e-57 | FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_0ba2aa6d042f23fe7fc3df38a9efcc62 | p3@Cst9 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_0ba2aa6d042f23fe7fc3df38a9efcc62 | p3@Cst9 |
| 1.46e-57 | FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_0ba2aa6d042f23fe7fc3df38a9efcc62 | p22@Rgs3 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_0ba2aa6d042f23fe7fc3df38a9efcc62 | p22@Rgs3 |
| 1.91e-57 | FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_cf7288aaf43bf431622f052605bf4617 | p1@Fkbp6 |
| 1.91e-57 | FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_cf7288aaf43bf431622f052605bf4617 | p@chr7:149469129..149469146, + |
| 1.91e-57 | FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_cf7288aaf43bf431622f052605bf4617 | p1@Fkbp6 |
| 1.91e-57 | FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_cf7288aaf43bf431622f052605bf4617 | p@chr7:149469129..149469146, + |
| 2.3e-57 | FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_c48fd97d031df295921f43f7b77c06fa | p1@Mir202 |
| 2.3e-57 | FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_c48fd97d031df295921f43f7b77c06fa | p1@Mir202 |
| 1.44e-56 | FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_77f659026345e48b2e0a4d49ea0307fb | p1@Hormad1 |
| 1.44e-56 | FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_77f659026345e48b2e0a4d49ea0307fb | p1@Hormad1 |
| 1.57e-56 | FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_f693d3a84894dd8625d7f4303b041443 | p1@Hist1h2aa |
| 1.57e-56 | FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_f693d3a84894dd8625d7f4303b041443 | p1@Hist1h2aa |
| 1.84e-56 | FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_3e81a36e9cfff36d474ce22b0164fe9e | p2@KLF17 |
| 1.84e-56 | FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_3e81a36e9cfff36d474ce22b0164fe9e | p2@KLF17 |
| 1.24e-55 | FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_bf028d3fcef826aad558651a7dc9a306 | p1@Piwil2 |
| 1.24e-55 | FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_bf028d3fcef826aad558651a7dc9a306 | p1@Piwil2 |
| 1.82e-55 | FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_c8d3a80b55cdcdb17b9c623c57096b52 | p1@Tex12 |
| 1.82e-55 | FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_c8d3a80b55cdcdb17b9c623c57096b52 | p1@Tex12 |
| 1.99e-55 | FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_dc06bc085a612954171baa1e17b13ccd | p1@Cst12 |
| 1.99e-55 | FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_dc06bc085a612954171baa1e17b13ccd | p1@Cst12 |
| 2.92e-55 | FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_7e6bbbdb835709a5f996e1308cbb4422 | p1@Gm949 |
| 2.92e-55 | FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_7e6bbbdb835709a5f996e1308cbb4422 | p1@Gm949 |
| 1.21e-54 | FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_044437f7d45772e385589a6bec2009d6 | p1@Fam178b |
| 1.21e-54 | FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_044437f7d45772e385589a6bec2009d6 | p1@Fam178b |
| 2.26e-54 | FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_fc52394e05946040f4cd8199b2bd038f | p1@Dazl |
| 2.26e-54 | FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_fc52394e05946040f4cd8199b2bd038f | p1@Dazl |
| 2.54e-54 | FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_bd810e44725d60bd2ea3cce3fb67de47 | p1@Exoc3l2 |
| 2.54e-54 | FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_bd810e44725d60bd2ea3cce3fb67de47 | p1@Exoc3l2 |
| 6.89e-54 | FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_09657f81a0ca46381fd41e343005e538 | p1@Tdrd12 |
| 6.89e-54 | FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_09657f81a0ca46381fd41e343005e538 | p1@Tdrd12 |
| 7.61e-54 | FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_a5b9128ecbdf06d020fc665167024433 | p4@Taf9b |
| 7.61e-54 | FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_a5b9128ecbdf06d020fc665167024433 | p4@Taf9b |
| 2.73e-53 | FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_b3813ef73b74d1f1369207b0bf17600c | p3@Hsd17b3 |
| 2.73e-53 | FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_b3813ef73b74d1f1369207b0bf17600c | p3@Hsd17b3 |
| 2.73e-53 | FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_b3813ef73b74d1f1369207b0bf17600c | p2@Exoc3l2 |
| 2.73e-53 | FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_b3813ef73b74d1f1369207b0bf17600c | p2@Exoc3l2 |
| 3.37e-53 | FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_95969ea464922fc57ed7bbb65a15af3e | p3@Dmrt1 |
| 3.37e-53 | FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_95969ea464922fc57ed7bbb65a15af3e | p3@Dmrt1 |
| 4.16e-53 | FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_863a3b85163798cb2d36967ef338532d | p1@Tktl1 |
| 4.16e-53 | FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_863a3b85163798cb2d36967ef338532d | p1@Tktl1 |
| 4.63e-53 | FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_b8bec0a872eafeb6b14455f98337d5b0 | p3@Tex12 |
| 4.63e-53 | FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_b8bec0a872eafeb6b14455f98337d5b0 | p3@Tex12 |
| 6.36e-53 | FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_843fb1741a75526626202f746ed13f59 | p@chr5:26334211..26334241, + |
| 6.36e-53 | FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_843fb1741a75526626202f746ed13f59 | p@chr5:26334211..26334241, + |
| 8.31e-53 | FFCP PHASE1:Mm9::chr5:135825912..135825919,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p2@Fkbp6 |
| 8.31e-53 | FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p1@Sohlh1 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p2@Fkbp6 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr11:69431224..69431241, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr8:26314366..26314395, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr16:37843615..37843636, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr7:104599810..104599819,+#_a50daf9cf48be7d4ea7581de4ae398b7 | p3@Kctd14 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p1@Sohlh1 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr16:37843615..37843636, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chr7:104599810..104599819,+#_a50daf9cf48be7d4ea7581de4ae398b7 | p3@Kctd14 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr14:63940369..63940380,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr14:63940369..63940380, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chrX:93160409..93160432, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr11:69431224..69431241, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr8:26314366..26314395, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chrX:93160409..93160432, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr14:63940369..63940380,-#_a50daf9cf48be7d4ea7581de4ae398b7 | p@chr14:63940369..63940380, - |
| 8.63e-53 | FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_3330acc758c81abc7182eff715f21eb8 | p5@Gstm6 |
| 8.63e-53 | FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_3330acc758c81abc7182eff715f21eb8 | p5@Gstm6 |
| 1.03e-52 | FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_0b055f47ee90e4f3e0db051a4d570ee5 | p2@Kctd14 |
| 1.03e-52 | FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_0b055f47ee90e4f3e0db051a4d570ee5 | p2@Kctd14 |
| 1.84e-52 | FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_94bbedfbf98cdd873a7cc72bc9e45c16 | p3@Tulp2 |
| 1.84e-52 | FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_94bbedfbf98cdd873a7cc72bc9e45c16 | p3@Tulp2 |
| 2.15e-52 | FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_86f792817a71e2b07f377e3f0e27fdcd | p3@Fkbp5 |
| 2.15e-52 | FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_86f792817a71e2b07f377e3f0e27fdcd | p3@Fkbp5 |
| 4.88e-52 | FFCP PHASE2:Mm9::chr6:120726529..120726551,+#_46d9cd2942977636027b471af26c2bef | p@chr6:120726529..120726551, + |
| 4.88e-52 | FFCP PHASE1:Mm9::chr6:120726529..120726551,+#_46d9cd2942977636027b471af26c2bef | p@chr6:120726529..120726551, + |
| 1.03e-51 | FFCP PHASE2:Mm9::chr1:182312504..182312531,+#_0223802e4fe605c907b3c6993677a96e | p@chr1:182312504..182312531, + |
| 1.03e-51 | FFCP PHASE1:Mm9::chr1:182312504..182312531,+#_0223802e4fe605c907b3c6993677a96e | p@chr1:182312504..182312531, + |
| 1.67e-51 | FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_ca5b2aae667801792f09384c88af692d | p@chrX:98989738..98989756, - |
| 1.67e-51 | FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_ca5b2aae667801792f09384c88af692d | p@chrX:98989738..98989756, - |
| 7.03e-51 | FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_74f2451273843408feb6b3e7ae1ec967 | p1@Ccdc152 |
| 7.03e-51 | FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_74f2451273843408feb6b3e7ae1ec967 | p1@Ccdc152 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
