UBERON:0001434: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 | ||
| | |anatomical_img_id=FMA:23875 | ||
|comment=Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates | |comment=Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates | ||
|created_by= | |created_by= | ||
| | |def="Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0001474;;UBERON:0002204;;UBERON:0002294;;UBERON:0002330;;UBERON:0002390;;UBERON:0002405;;UBERON:0002416;;UBERON:0002423;;UBERON:0004456 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001434 | |||
|is_a=UBERON:0000467 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=skeletal system | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002204 | |part_of=UBERON:0002204 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001016;;UBPROP:0000001 "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string;;UBPROP:0000001 "System that provides physical support to the organism.[AAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="set of all bones and joints" NARROW SENSU [];;"skeleton system" EXACT [];;"Skelettsystem" RELATED [BTO:0001486] | |||
|union_of= | |||
|xref=AAO:0000566;;BTO:0001486;;EFO:0000806;;EHDAA2:0003168;;FMA:23881;;MA:0000018;;ncithesaurus:Skeletal_System;;OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA;;TAO:0000434;;VHOG:0001254;;VSAO:0000027;;XAO:0003060;;ZFA:0000434 | |||
}} | }} |
Latest revision as of 17:18, 12 September 2014
Name: | skeletal system | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA] | ||
Xrefs: |
| ||
Synonyms: |
"set of all bones and joints" NARROW SENSU [] "skeleton system" EXACT [] "Skelettsystem" RELATED [BTO:0001486] | ||
Comments: | Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates | ||
Alt_id: | UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000467(anatomical system) |
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disjoint_from: | UBERON:0001474(bone element),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
part_of: | UBERON:0002204(musculoskeletal system) |
Children
disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system) |
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part of: | UBERON:0000075 (subdivision of skeletal system),UBERON:0001474 (bone element),UBERON:0004288 (skeleton),UBERON:0004765 (skeletal element),UBERON:0004770 (articular system),UBERON:0008846 (skeletal ligament) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10195-103E6 (olfactory region, adult)
- 10264-104D3
- 10267-104D6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10320-105A5
- 10323-105A8
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10195-103E6 (olfactory region, adult)
- 10264-104D3
- 10267-104D6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10320-105A5
- 10323-105A8
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001434 (skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "System that provides physical support to the organism.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.