UBERON:0002405
From FANTOM5_SSTAR
Name: | immune system | |
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Namespace: | FANTOM | |
Definition: | "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] | |
Xrefs: |
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Comments: | This class was created automatically from a combination of ontologies | |
Alt_id: | UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000467(anatomical system) |
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disjoint_from: | UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system),UBERON:0002390 (hematopoietic system) |
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part of: | CL:0000738 (leukocyte),UBERON:0002106 (spleen),UBERON:0002370 (thymus),UBERON:0002371 (bone marrow),UBERON:0002465 (lymphoid system),UBERON:0005057 (immune organ),UBERON:0005562 (thymus primordium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10261-104C9
... further results Mouse (Mus musculus)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10261-104C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002405 (immune system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data