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UBERON:0002405

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Name:immune system
Namespace:FANTOM
Definition:"Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system]
Xrefs:
links:

AAO:0011003
BILA:0000104
FMA:9825
GAID:328
MA:0002711
MESH:A.15.382
ncithesaurus:Immune_System
OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA
SCTID:362590003
TAO:0001159
VHOG:0001247
XAO:0003152

ZFA:0001159
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system),UBERON:0002390 (hematopoietic system)
part of:CL:0000738 (leukocyte),UBERON:0002106 (spleen),UBERON:0002370 (thymus),UBERON:0002371 (bone marrow),UBERON:0002465 (lymphoid system),UBERON:0005057 (immune organ),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002405 (immune system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data