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|located_in=
|located_in=
|name=nerve trunk
|name=nerve trunk
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016

Latest revision as of 17:32, 12 September 2014

Name:nerve trunk
Namespace:FANTOM
Xrefs:
links:

BTO:0000927
EHDAA:4675
EMAPA:16986
FMA:5913

MA:0002408
Synonyms: "trunk of nerve" EXACT []
Alt_id: UBERON:MA_0002408-FMA_5913

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004732(segmental subdivision of nervous system)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000941 (cranial nerve II)
disjoint from:UBERON:0002100 (trunk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002464 (nerve trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_35e10b4b069cbc4f49e47305940c0a7fp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_35e10b4b069cbc4f49e47305940c0a7fp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_9f523b8f96fbfe172c7b991302138538p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_9f523b8f96fbfe172c7b991302138538p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_9f523b8f96fbfe172c7b991302138538p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_9f523b8f96fbfe172c7b991302138538p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_9f523b8f96fbfe172c7b991302138538p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_9f523b8f96fbfe172c7b991302138538p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_9f523b8f96fbfe172c7b991302138538p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_9f523b8f96fbfe172c7b991302138538p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_9f523b8f96fbfe172c7b991302138538p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_9f523b8f96fbfe172c7b991302138538p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_9f523b8f96fbfe172c7b991302138538p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_9f523b8f96fbfe172c7b991302138538p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_9f523b8f96fbfe172c7b991302138538p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_9f523b8f96fbfe172c7b991302138538p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_9f523b8f96fbfe172c7b991302138538p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_9f523b8f96fbfe172c7b991302138538p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_9f523b8f96fbfe172c7b991302138538p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_9f523b8f96fbfe172c7b991302138538p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_9f523b8f96fbfe172c7b991302138538p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_9f523b8f96fbfe172c7b991302138538p@chr14:105807545..105807554, +
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_b1e373c761adc4d957320c4c6e1ab920p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_b1e373c761adc4d957320c4c6e1ab920p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_b1e373c761adc4d957320c4c6e1ab920p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_b1e373c761adc4d957320c4c6e1ab920p@chr2:192696669..192696673, +
2.55e-98FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:203036812..203036840, +
2.55e-98FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_b1e373c761adc4d957320c4c6e1ab920p4@ENST00000415637
2.55e-98FFCP PHASE2:Hg19::chr1:169073323..169073334,+#_b1e373c761adc4d957320c4c6e1ab920p4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_b1e373c761adc4d957320c4c6e1ab920p@chr18:61506836..61506840, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_b1e373c761adc4d957320c4c6e1ab920p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_b1e373c761adc4d957320c4c6e1ab920p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_b1e373c761adc4d957320c4c6e1ab920p@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_b1e373c761adc4d957320c4c6e1ab920p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_b1e373c761adc4d957320c4c6e1ab920p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_b1e373c761adc4d957320c4c6e1ab920p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_b1e373c761adc4d957320c4c6e1ab920p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_b1e373c761adc4d957320c4c6e1ab920p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_b1e373c761adc4d957320c4c6e1ab920p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_b1e373c761adc4d957320c4c6e1ab920p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_b1e373c761adc4d957320c4c6e1ab920p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_b1e373c761adc4d957320c4c6e1ab920p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_b1e373c761adc4d957320c4c6e1ab920p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_b1e373c761adc4d957320c4c6e1ab920p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_b1e373c761adc4d957320c4c6e1ab920p1@ENST00000510391
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_b1e373c761adc4d957320c4c6e1ab920p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_b1e373c761adc4d957320c4c6e1ab920p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_b1e373c761adc4d957320c4c6e1ab920p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_b1e373c761adc4d957320c4c6e1ab920p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_b1e373c761adc4d957320c4c6e1ab920p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_b1e373c761adc4d957320c4c6e1ab920p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_b1e373c761adc4d957320c4c6e1ab920p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_b1e373c761adc4d957320c4c6e1ab920p@chr11:30166055..30166059, -
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_b1e373c761adc4d957320c4c6e1ab920p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_b1e373c761adc4d957320c4c6e1ab920p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_b1e373c761adc4d957320c4c6e1ab920p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_b1e373c761adc4d957320c4c6e1ab920p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_b1e373c761adc4d957320c4c6e1ab920p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_b1e373c761adc4d957320c4c6e1ab920p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_b1e373c761adc4d957320c4c6e1ab920p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_b1e373c761adc4d957320c4c6e1ab920p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_b1e373c761adc4d957320c4c6e1ab920p3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_b1e373c761adc4d957320c4c6e1ab920p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_b1e373c761adc4d957320c4c6e1ab920p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_b1e373c761adc4d957320c4c6e1ab920p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_b1e373c761adc4d957320c4c6e1ab920p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_b1e373c761adc4d957320c4c6e1ab920p@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_b1e373c761adc4d957320c4c6e1ab920p@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_b1e373c761adc4d957320c4c6e1ab920p22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_b1e373c761adc4d957320c4c6e1ab920p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_b1e373c761adc4d957320c4c6e1ab920p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_b1e373c761adc4d957320c4c6e1ab920p10@ALK
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_b1e373c761adc4d957320c4c6e1ab920p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_b1e373c761adc4d957320c4c6e1ab920p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_b1e373c761adc4d957320c4c6e1ab920p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_b1e373c761adc4d957320c4c6e1ab920p@chr15:36402459..36402465, -

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