UBERON:0000941
From FANTOM5_SSTAR
Name: | cranial nerve II | ||
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Namespace: | FANTOM | ||
Definition: | "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator] | ||
Xrefs: |
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Synonyms: |
"02 optic nerve" EXACT [AAO:0010345] "CN-II" RELATED [ZFA:0000435] "cranial II" EXACT [] "nervus opticus" EXACT [] "nervus opticus [II]" EXACT [FMA:50863, FMA:TA] "optic II" EXACT [EHDAA2:0001313] "optic II nerve" EXACT [EHDAA2:0001313] "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] "optic nerve [II]" EXACT [] "second cranial nerve" EXACT [] | ||
Comments: | AO notes: (relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon. Structure notes: We are consistent here with the FMA in considering CN-II continuous with the retina. Editor notes: - determine the precise relationship between CN II and the CNS | ||
Alt_id: | UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0001785(cranial nerve),UBERON:0002464(nerve trunk),UBERON:0004121(ectoderm-derived structure),UBERON:0004904(nerve connecting eye with brain) |
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develops_from: | UBERON:0003902(retinal neural layer) |
part_of: | UBERON:0002104(visual system) |
Children
derives from: | FF:0011166 (human optic nerve sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10305-104H8
- 10333-105B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000941 (cranial nerve II), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_b410062e5e3210cec6cadee190efeb01 | p@chr12:57628762..57628773, - |
5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_b410062e5e3210cec6cadee190efeb01 | p@chr12:57628762..57628773, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr18:25161980..25161984, - |
9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr1:62928606..62928608, + |
9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr5:149250331..149250335, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr7:15056365..15056368, - |
9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr4:127394496..127394500, - |
9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr14:105807545..105807554, + |
9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr2:188432107..188432111, + |
9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr18:74702556..74702558, - |
9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr2:60133192..60133194, - |
9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_fb3d956da5b1429f8324104720c91dc1 | p@chr5:151258901..151258902, + |
9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_fb3d956da5b1429f8324104720c91dc1 | p@chr18:25161980..25161984, - |
2.55e-98 | FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_6c40f5564be44919d423f220825d7960 | p@chr6:168558338..168558388, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_6c40f5564be44919d423f220825d7960 | p@chr5:58471631..58471634, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_6c40f5564be44919d423f220825d7960 | p@chr5:1414652..1414695, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_6c40f5564be44919d423f220825d7960 | p@chr14:68527802..68527806, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_6c40f5564be44919d423f220825d7960 | p@chr3:163246025..163246029, + |
2.55e-98 | FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_6c40f5564be44919d423f220825d7960 | p@chr11:57030314..57030346, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_6c40f5564be44919d423f220825d7960 | p7@TMEM88B |
2.55e-98 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_6c40f5564be44919d423f220825d7960 | p@chr18:39859562..39859566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_6c40f5564be44919d423f220825d7960 | p@chr2:97626726..97626741, + |
2.55e-98 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_6c40f5564be44919d423f220825d7960 | p@chr21:45724075..45724081, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_6c40f5564be44919d423f220825d7960 | p@chr1:66713214..66713221, + |
2.55e-98 | FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_6c40f5564be44919d423f220825d7960 | p@chr12:127992016..127992052, + |
2.55e-98 | FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_6c40f5564be44919d423f220825d7960 | p@chr8:126163123..126163134, + |
2.55e-98 | FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_6c40f5564be44919d423f220825d7960 | p@chr4:188536760..188536764, - |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_6c40f5564be44919d423f220825d7960 | p@chr4:139501766..139501798, - |
2.55e-98 | FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_6c40f5564be44919d423f220825d7960 | p@chr9:79519652..79519664, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_6c40f5564be44919d423f220825d7960 | p1@ENST00000510391 |
2.55e-98 | FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_6c40f5564be44919d423f220825d7960 | p25@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_6c40f5564be44919d423f220825d7960 | p@chr7:152790347..152790351, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_6c40f5564be44919d423f220825d7960 | p@chr10:22768515..22768517, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:21277180..21277193,+#_6c40f5564be44919d423f220825d7960 | p@chr2:21277180..21277193, + |
2.55e-98 | FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_6c40f5564be44919d423f220825d7960 | p@chr10:118927879..118927891, + |
2.55e-98 | FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_6c40f5564be44919d423f220825d7960 | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_6c40f5564be44919d423f220825d7960 | p@chr3:39827273..39827281, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_6c40f5564be44919d423f220825d7960 | p@chr2:29645795..29645797, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_6c40f5564be44919d423f220825d7960 | p@chr7:103086717..103086724, + |
2.55e-98 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_6c40f5564be44919d423f220825d7960 | p@chr7:77789390..77789399, - |
2.55e-98 | FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_6c40f5564be44919d423f220825d7960 | p@chr1:203036812..203036840, + |
2.55e-98 | FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_6c40f5564be44919d423f220825d7960 | p@chr17:12935401..12935405, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_6c40f5564be44919d423f220825d7960 | p@chr5:109466651..109466653, + |
2.55e-98 | FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_6c40f5564be44919d423f220825d7960 | p@chr2:171939999..171940009, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_6c40f5564be44919d423f220825d7960 | p@chr14:37227792..37227796, - |
2.55e-98 | FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_6c40f5564be44919d423f220825d7960 | p@chr8:130597061..130597068, + |
2.55e-98 | FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_6c40f5564be44919d423f220825d7960 | p@chr5:103200303..103200307, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_6c40f5564be44919d423f220825d7960 | p4@ENST00000415637 |
2.55e-98 | FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_6c40f5564be44919d423f220825d7960 | p@chr17:47107522..47107524, + |
2.55e-98 | FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_6c40f5564be44919d423f220825d7960 | p@chr7:88535666..88535671, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_6c40f5564be44919d423f220825d7960 | p@chr14:85119696..85119699, + |
2.55e-98 | FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_6c40f5564be44919d423f220825d7960 | p@chr18:61506836..61506840, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_6c40f5564be44919d423f220825d7960 | p@chr4:130221053..130221071, + |
2.55e-98 | FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_6c40f5564be44919d423f220825d7960 | p@chr21:22483836..22483880, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_6c40f5564be44919d423f220825d7960 | p@chr1:154942133..154942148, - |
2.55e-98 | FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_6c40f5564be44919d423f220825d7960 | p@chr14:88034381..88034386, - |
2.55e-98 | FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_6c40f5564be44919d423f220825d7960 | p@chr3:77060783..77060789, + |
2.55e-98 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_6c40f5564be44919d423f220825d7960 | p@chr18:39859562..39859566, + |
2.55e-98 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_6c40f5564be44919d423f220825d7960 | p@chr3:13992334..13992338, - |
2.55e-98 | FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_6c40f5564be44919d423f220825d7960 | p@chr16:51174920..51174928, - |
2.55e-98 | FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_6c40f5564be44919d423f220825d7960 | p22@SOX2-OT |
2.55e-98 | FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_6c40f5564be44919d423f220825d7960 | p@chr1:66713214..66713221, + |
2.55e-98 | FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_6c40f5564be44919d423f220825d7960 | p@chr14:68589926..68589929, + |
2.55e-98 | FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_6c40f5564be44919d423f220825d7960 | p7@TMEM88B |
2.55e-98 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_6c40f5564be44919d423f220825d7960 | p3@ENST00000558781 |
2.55e-98 | FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_6c40f5564be44919d423f220825d7960 | p@chr13:64423563..64423566, + |
2.55e-98 | FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_6c40f5564be44919d423f220825d7960 | p@chr4:139590958..139590961, - |
2.55e-98 | FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_6c40f5564be44919d423f220825d7960 | p@chr11:2435409..2435443, - |
2.55e-98 | FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_6c40f5564be44919d423f220825d7960 | p59@ANK3 |
2.55e-98 | FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_6c40f5564be44919d423f220825d7960 | p@chr15:36402459..36402465, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_6c40f5564be44919d423f220825d7960 | p10@ALK |
2.55e-98 | FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_6c40f5564be44919d423f220825d7960 | p@chr17:12935401..12935405, - |
2.55e-98 | FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_6c40f5564be44919d423f220825d7960 | p@chr11:79291300..79291301, + |
2.55e-98 | FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_6c40f5564be44919d423f220825d7960 | p@chr9:74167667..74167687, - |
2.55e-98 | FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_6c40f5564be44919d423f220825d7960 | p@chr8:133945378..133945386, + |
2.55e-98 | FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_6c40f5564be44919d423f220825d7960 | p@chr19:20382476..20382481, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_6c40f5564be44919d423f220825d7960 | p10@PPAP2A |
2.55e-98 | FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_6c40f5564be44919d423f220825d7960 | p@chr8:90420477..90420478, - |
2.55e-98 | FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_6c40f5564be44919d423f220825d7960 | p@chr9:19514976..19514978, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_6c40f5564be44919d423f220825d7960 | p@chr14:68527802..68527806, + |
2.55e-98 | FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_6c40f5564be44919d423f220825d7960 | p@chr10:37679189..37679193, + |
2.55e-98 | FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_6c40f5564be44919d423f220825d7960 | p2@ATAD3B |
2.55e-98 | FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_6c40f5564be44919d423f220825d7960 | p@chr2:134472430..134472432, + |
2.55e-98 | FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_6c40f5564be44919d423f220825d7960 | p@chr6:121951983..121951986, + |
2.55e-98 | FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_6c40f5564be44919d423f220825d7960 | p@chr11:30166055..30166059, - |
2.55e-98 | FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_6c40f5564be44919d423f220825d7960 | p@chr14:88034381..88034386, - |
2.55e-98 | FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_6c40f5564be44919d423f220825d7960 | p@chr8:22000519..22000525, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_6c40f5564be44919d423f220825d7960 | p@chr1:218214846..218214850, - |
2.55e-98 | FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_6c40f5564be44919d423f220825d7960 | p@chr2:133035182..133035195, - |
2.55e-98 | FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_6c40f5564be44919d423f220825d7960 | p18@TGFB3 |
2.55e-98 | FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_6c40f5564be44919d423f220825d7960 | p@chr22:30951607..30951613, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.