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{{UBERON
{{UBERON
|id=UBERON:0002539
|name=pharyngeal arch
|namespace=
|def="One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch]
|xref=AAO:0010359;;BTO:0001785;;EFO:0000959;;EHDAA:571;;EMAPA:16117;;GAID:1292;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png;;MAT:0000242;;MESH:A.16.254.160;;MIAA:0000242;;ncithesaurus:Pharyngeal_Arch;;SCTID:308766004;;TAO:0001306;;VAO:0000149;;VHOG:0000155;;XAO:0000096;;ZFA:0001306
|is_a=UBERON:0000481;;UBERON:0010188
|synonym="branchial arch" NARROW [BTO:0001785, MP:0002884];;"pharyngeal arches" EXACT PLURAL [];;"visceral arch" RELATED []
|comment=Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering
|alt_id=UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
|alt_id=UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
|disjoint_from=
|comment=Numbered cranial to caudal. different in mammals. branchial arch
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002539
|is_a=UBERON:0000481 ;;UBERON:0002050 ;;UBERON:0004119 ;;UBERON:0010188 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal arch
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0008814;;UBERON:0008816
|part_of=UBERON:0008814;;UBERON:0008816
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="arcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_arch];;"branchial arch" NARROW [BTO:0001785, MP:0002884];;"pharyngeal arches" EXACT PLURAL [];;"visceral arch" RELATED []
|union_of=
|xref=AAO:0010359;;BTO:0001785;;EFO:0000959;;EHDAA:571;;EMAPA:16117;;GAID:1292;;http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png;;MAT:0000242;;MESH:A.16.254.160;;MIAA:0000242;;ncithesaurus:Pharyngeal_Arch;;SCTID:308766004;;TAO:0001306;;VHOG:0000155;;XAO:0000096;;ZFA:0001306
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:pharyngeal arch
Namespace:FANTOM
Definition:"One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch]
Xrefs:
links:

AAO:0010359
BTO:0001785
EFO:0000959
EHDAA:571
EMAPA:16117
GAID:1292
[ Gray41.png Gray41.png]
[ 200px-Gray41.png 200px-Gray41.png]
MAT:0000242
MESH:A.16.254.160
MIAA:0000242
ncithesaurus:Pharyngeal_Arch
SCTID:308766004
TAO:0001306
VHOG:0000155
XAO:0000096

ZFA:0001306
Synonyms: "arcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_arch]
"branchial arch" NARROW [BTO:0001785, MP:0002884]
"pharyngeal arches" EXACT PLURAL []
"visceral arch" RELATED []
Comments:Numbered cranial to caudal. different in mammals. branchial arch
Alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0002050(embryonic structure),UBERON:0004119(endoderm-derived structure),UBERON:0010188(protuberance),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0008814(pharyngeal arch system),UBERON:0008816(embryonic head)



Children

is a:UBERON:0004362 (pharyngeal arch 1)
develops from:UBERON:0008895 (splanchnocranium)
part of:UBERON:0004363 (pharyngeal arch artery),UBERON:0009494 (pharyngeal arch mesenchymal region)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002539 (pharyngeal arch), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96bp@chr22:23586671..23586679, +
1.83e-98FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96bp@chr22:23586671..23586679, +
2.83e-66FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1ap@chr9:22256680..22256685, +
2.83e-66FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1ap1@DEFB4A
2.83e-66FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1ap1@DEFB4A
2.83e-66FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1ap@chr10:106205565..106205599, +
2.83e-66FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1ap@chr9:22256680..22256685, +
2.83e-66FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1ap@chr10:106205565..106205599, +
8.15e-60FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7bp@chr10:106205503..106205518, +
8.15e-60FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7bp@chr10:106205503..106205518, +
9.96e-60FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008p2@KRT16P1
9.96e-60FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008p2@KRT16P1
1.22e-59FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58p@chr16:80068152..80068165, -
1.22e-59FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58p@chr16:80068152..80068165, -
5.37e-50FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75p@chr11:102140952..102140956, +
5.37e-50FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75p@chr11:102140952..102140956, +
1.73e-49FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774p@chr4:143470541..143470551, +
1.73e-49FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774p@chr4:143470541..143470551, +
1.22e-44FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48p@chr16:57954541..57954548, -
1.22e-44FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48p@chr16:57954541..57954548, -
3.16e-43FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504p@chr7:137570496..137570504, -
3.16e-43FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504p@chr7:137570496..137570504, -
3.65e-43FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06p@chr1:7447129..7447134, +
3.65e-43FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06p@chr1:7447129..7447134, +
5.62e-43FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200p@chr21:44168074..44168079, +
5.62e-43FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200p@chr21:44168074..44168079, +
5.62e-43FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200p@chr3:47155553..47155568, -
5.62e-43FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200p@chr3:47155553..47155568, -
6.3e-38FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06p@chr10:106205489..106205498, +
6.3e-38FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06p@chr10:106205489..106205498, +
1.18e-37FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80p@chr18:20493912..20493923, +
1.18e-37FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80p@chr18:20493912..20493923, +
1.34e-37FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928bp@chr18:9649081..9649088, +
1.34e-37FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928bp@chr18:9649081..9649088, +
4.27e-34FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr4:155387574..155387588, -
4.27e-34FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr21:27558561..27558565, -
4.27e-34FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr4:70707713..70707716, -
4.27e-34FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr8:90366581..90366594, -
4.27e-34FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr6:21648948..21648949, +
4.27e-34FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2p14@C17orf67
4.27e-34FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr4:155387574..155387588, -
4.27e-34FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr4:70707713..70707716, -
4.27e-34FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr21:27558561..27558565, -
4.27e-34FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2p14@C17orf67
4.27e-34FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr8:90366581..90366594, -
4.27e-34FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2p@chr6:21648948..21648949, +
5.98e-34FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45p@chr9:16094653..16094654, +
5.98e-34FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45p@chr9:16094653..16094654, +
6.72e-34FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669p@chr1:116072140..116072172, +
6.72e-34FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669p@chr1:116072140..116072172, +
8.35e-34FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10p5@IFNK
8.35e-34FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10p5@IFNK
1.05e-33FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567bp@chr14:81221483..81221489, +
1.05e-33FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567bp@chr14:81221483..81221489, +
1.31e-33FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743p36@PTK2
1.31e-33FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743p36@PTK2
1.86e-30FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19p@chr18:20493879..20493891, +
1.86e-30FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19p@chr18:20493879..20493891, +
1.86e-30FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19p@chr12:98739159..98739191, -
1.86e-30FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19p@chr12:98739159..98739191, -
2.28e-30FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dcp@chr8:124850358..124850380, +
2.28e-30FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dcp@chr8:124850358..124850380, +
4.1e-28FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3p23@ODZ2
4.1e-28FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3p23@ODZ2
4.92e-28FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78p@chr13:30259768..30259777, +
4.92e-28FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78p@chr13:30259768..30259777, +
7.1e-28FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526p@chr16:57954525..57954533, -
7.1e-28FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526p@chr16:57954525..57954533, -
1.76e-27FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52p1@SPRR2C, p2@SPRR2D, p3@SPRR2A
1.76e-27FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52p1@SPRR2C, p2@SPRR2D, p3@SPRR2A
1.82e-27FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8p20@CCDC91
1.82e-27FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8p20@CCDC91
2.32e-27FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65p@chr5:167247103..167247112, +
2.32e-27FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65p@chr5:167247103..167247112, +
4.06e-27FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019p8@TOP1MT
4.06e-27FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019p8@TOP1MT
1.09e-26FFCP PHASE2:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7p11@C9orf46
1.09e-26FFCP PHASE1:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7p11@C9orf46
1.19e-25FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9dp@chr12:28116496..28116507, -
1.19e-25FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9dp@chr12:28116496..28116507, -
7.24e-24FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392p@chr7:137570475..137570486, -
7.24e-24FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392p@chr7:137570475..137570486, -
9.87e-24FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041p1@ANXA8L2
9.87e-24FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041p1@ANXA8L2
1.57e-23FFCP PHASE2:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191p@chr5:56248155..56248156, +
1.57e-23FFCP PHASE1:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191p@chr5:56248155..56248156, +
4.34e-23FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3p4@IFNK
4.34e-23FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3p4@IFNK
6.78e-23FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02p1@KRT16P1
6.78e-23FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02p@chr4:71388662..71388695, +
6.78e-23FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02p@chr4:71388662..71388695, +
6.78e-23FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02p1@KRT16P1
2.83e-22FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980p@chr18:9617195..9617198, -
2.83e-22FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980p@chr18:9617195..9617198, -
3.78e-22FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4p@chr11:13073062..13073067, +
3.78e-22FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4p@chr11:13073062..13073067, +
4.36e-22FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456p@chr12:47182487..47182490, -
4.36e-22FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456p2@HEPHL1
4.36e-22FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456p@chr12:47182487..47182490, -
4.36e-22FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456p2@HEPHL1










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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