UBERON:0002539: Difference between revisions
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|located_in= | |located_in= | ||
|name=pharyngeal arch | |name=pharyngeal arch | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0008814;;UBERON:0008816 | |part_of=UBERON:0008814;;UBERON:0008816 | ||
Latest revision as of 17:33, 12 September 2014
| Name: | pharyngeal arch | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch] | ||
| Xrefs: |
| ||
| Synonyms: |
"arcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_arch] "branchial arch" NARROW [BTO:0001785, MP:0002884] "pharyngeal arches" EXACT PLURAL [] "visceral arch" RELATED [] | ||
| Comments: | Numbered cranial to caudal. different in mammals. branchial arch | ||
| Alt_id: | UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray41.png]
200px-Gray41.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000481(multi-tissue structure),UBERON:0002050(embryonic structure),UBERON:0004119(endoderm-derived structure),UBERON:0010188(protuberance),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0008814(pharyngeal arch system),UBERON:0008816(embryonic head) |
Children
| is a: | UBERON:0004362 (pharyngeal arch 1) |
|---|---|
| develops from: | UBERON:0008895 (splanchnocranium) |
| part of: | UBERON:0004363 (pharyngeal arch artery),UBERON:0009494 (pharyngeal arch mesenchymal region) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002539 (pharyngeal arch), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96b | p@chr22:23586671..23586679, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_237655ba90deeb7ab85720c295eea96b | p@chr22:23586671..23586679, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1a | p@chr10:106205565..106205599, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_c43c84b96537d21c400bde770e1edb1a | p@chr10:106205565..106205599, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1a | p@chr9:22256680..22256685, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1a | p1@DEFB4A |
| 2.83e-66 | FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_c43c84b96537d21c400bde770e1edb1a | p1@DEFB4A |
| 2.83e-66 | FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_c43c84b96537d21c400bde770e1edb1a | p@chr9:22256680..22256685, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7b | p@chr10:106205503..106205518, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_d6d236ba8909986e56ebe773fcebdb7b | p@chr10:106205503..106205518, + |
| 9.96e-60 | FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008 | p2@KRT16P1 |
| 9.96e-60 | FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_2391710b468d35d2ef2982079c005008 | p2@KRT16P1 |
| 1.22e-59 | FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58 | p@chr16:80068152..80068165, - |
| 1.22e-59 | FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_cbd9b0d26746ce9feaf6b6ebbaf9fc58 | p@chr16:80068152..80068165, - |
| 5.37e-50 | FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75 | p@chr11:102140952..102140956, + |
| 5.37e-50 | FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_9392d5da9b41dd80ded72661bf2a6a75 | p@chr11:102140952..102140956, + |
| 1.73e-49 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774 | p@chr4:143470541..143470551, + |
| 1.73e-49 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_d7946d8f6d811044a00505a834524774 | p@chr4:143470541..143470551, + |
| 1.22e-44 | FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48 | p@chr16:57954541..57954548, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_b192d503e967e8e88293133546f2ff48 | p@chr16:57954541..57954548, - |
| 3.16e-43 | FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504 | p@chr7:137570496..137570504, - |
| 3.16e-43 | FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_ba2c262e2e09f60f3d88c9d8d2157504 | p@chr7:137570496..137570504, - |
| 3.65e-43 | FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06 | p@chr1:7447129..7447134, + |
| 3.65e-43 | FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_8ff198a4e50b805eec7dd9e5e21b1e06 | p@chr1:7447129..7447134, + |
| 5.62e-43 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200 | p@chr21:44168074..44168079, + |
| 5.62e-43 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_49a2eccaa946ef707a227a6f340bf200 | p@chr21:44168074..44168079, + |
| 5.62e-43 | FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200 | p@chr3:47155553..47155568, - |
| 5.62e-43 | FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_49a2eccaa946ef707a227a6f340bf200 | p@chr3:47155553..47155568, - |
| 6.3e-38 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06 | p@chr10:106205489..106205498, + |
| 6.3e-38 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_8776754d8a78d7eb1cf9dc1ed89efb06 | p@chr10:106205489..106205498, + |
| 1.18e-37 | FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80 | p@chr18:20493912..20493923, + |
| 1.18e-37 | FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_b6a308a60661c0f21362c0d80551bb80 | p@chr18:20493912..20493923, + |
| 1.34e-37 | FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928b | p@chr18:9649081..9649088, + |
| 1.34e-37 | FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_a4f8bc769440371b056ffaf65630928b | p@chr18:9649081..9649088, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr6:21648948..21648949, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:155387574..155387588, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr21:27558561..27558565, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:70707713..70707716, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr8:90366581..90366594, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr6:21648948..21648949, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p14@C17orf67 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:155387574..155387588, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr4:70707713..70707716, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr21:27558561..27558565, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p@chr8:90366581..90366594, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_a60b74b592cb88ba3dccd546c9bc9ef2 | p14@C17orf67 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45 | p@chr9:16094653..16094654, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_cfe2cfa09b3f7ff5199af3b68e906f45 | p@chr9:16094653..16094654, + |
| 6.72e-34 | FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669 | p@chr1:116072140..116072172, + |
| 6.72e-34 | FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_cd4e5165078ccddfe9e4a7e35cb5b669 | p@chr1:116072140..116072172, + |
| 8.35e-34 | FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10 | p5@IFNK |
| 8.35e-34 | FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_a78f9f49139288100605eaf7a95f9e10 | p5@IFNK |
| 1.05e-33 | FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567b | p@chr14:81221483..81221489, + |
| 1.05e-33 | FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_02d8804805c328834cb69bf6f279567b | p@chr14:81221483..81221489, + |
| 1.31e-33 | FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743 | p36@PTK2 |
| 1.31e-33 | FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_cd78868b41f8ba0bfd10081e2cc53743 | p36@PTK2 |
| 1.86e-30 | FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19 | p@chr12:98739159..98739191, - |
| 1.86e-30 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19 | p@chr18:20493879..20493891, + |
| 1.86e-30 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_0402dccb970a23821c73fb645f4c6f19 | p@chr18:20493879..20493891, + |
| 1.86e-30 | FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_0402dccb970a23821c73fb645f4c6f19 | p@chr12:98739159..98739191, - |
| 2.28e-30 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dc | p@chr8:124850358..124850380, + |
| 2.28e-30 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_bbca7e07b73b4e1029a54ede89b1e4dc | p@chr8:124850358..124850380, + |
| 4.1e-28 | FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3 | p23@ODZ2 |
| 4.1e-28 | FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_63a7e0ecfb8c0fda08206b718889baa3 | p23@ODZ2 |
| 4.92e-28 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78 | p@chr13:30259768..30259777, + |
| 4.92e-28 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_f105ff9300428ed875b5f574efa71f78 | p@chr13:30259768..30259777, + |
| 7.1e-28 | FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526 | p@chr16:57954525..57954533, - |
| 7.1e-28 | FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_f71b0dfeed31e1ad8352ae669b307526 | p@chr16:57954525..57954533, - |
| 1.76e-27 | FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.76e-27 | FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_434eb88d31b782d5adfd672a8616ae52 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.82e-27 | FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8 | p20@CCDC91 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_ba2d192b515f38d019b4d4a3a4b7b6b8 | p20@CCDC91 |
| 2.32e-27 | FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65 | p@chr5:167247103..167247112, + |
| 2.32e-27 | FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1064acb45eb730ec564ae34ae4b8fe65 | p@chr5:167247103..167247112, + |
| 4.06e-27 | FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019 | p8@TOP1MT |
| 4.06e-27 | FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_f0cc7061d3128eeae56eb474329eb019 | p8@TOP1MT |
| 1.09e-26 | FFCP PHASE2:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7 | p11@C9orf46 |
| 1.09e-26 | FFCP PHASE1:Hg19::chr9:5436634..5436659,-#_2e1e7317bed6768ef50e96fdd27028e7 | p11@C9orf46 |
| 1.19e-25 | FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9d | p@chr12:28116496..28116507, - |
| 1.19e-25 | FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_f0ac3837ca61483269cebeaa9f55fd9d | p@chr12:28116496..28116507, - |
| 7.24e-24 | FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392 | p@chr7:137570475..137570486, - |
| 7.24e-24 | FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_b7fbd63bfca2a06bc79e9df8b1a4f392 | p@chr7:137570475..137570486, - |
| 9.87e-24 | FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041 | p1@ANXA8L2 |
| 9.87e-24 | FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_1d722e39c2c1b66799d9d06e56553041 | p1@ANXA8L2 |
| 1.57e-23 | FFCP PHASE2:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191 | p@chr5:56248155..56248156, + |
| 1.57e-23 | FFCP PHASE1:Hg19::chr5:56248155..56248156,+#_5e12e04b0d98430adfe6dcf67431f191 | p@chr5:56248155..56248156, + |
| 4.34e-23 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3 | p4@IFNK |
| 4.34e-23 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_afee7865abce0c0cd3b5c471d5d08ce3 | p4@IFNK |
| 6.78e-23 | FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02 | p1@KRT16P1 |
| 6.78e-23 | FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02 | p@chr4:71388662..71388695, + |
| 6.78e-23 | FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_a5b123ad78119b1ddb4fb3b722827e02 | p@chr4:71388662..71388695, + |
| 6.78e-23 | FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_a5b123ad78119b1ddb4fb3b722827e02 | p1@KRT16P1 |
| 2.83e-22 | FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980 | p@chr18:9617195..9617198, - |
| 2.83e-22 | FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_ba0cf6d509d62c7a31b987c9dbcdf980 | p@chr18:9617195..9617198, - |
| 3.78e-22 | FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4 | p@chr11:13073062..13073067, + |
| 3.78e-22 | FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_85b733fb39c7a7f30a765551d35bd7b4 | p@chr11:13073062..13073067, + |
| 4.36e-22 | FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456 | p2@HEPHL1 |
| 4.36e-22 | FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456 | p@chr12:47182487..47182490, - |
| 4.36e-22 | FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_4aca3ccdb469ac4c17739a7e2bff9456 | p@chr12:47182487..47182490, - |
| 4.36e-22 | FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_4aca3ccdb469ac4c17739a7e2bff9456 | p2@HEPHL1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
