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{{UBERON
{{UBERON
|id=UBERON:0002950
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997
|name=regional part of midbrain
|anatomical_img_id=FMA:61997
|namespace=
|def="A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
|xref=FMA:61997;;NIF_GrossAnatomy:birnlex_763
|is_a=UBERON:0002616
|synonym="anatomical structure of brain of midbrain" EXACT [OBOL:automatic];;"biological structure of brain of midbrain" EXACT [OBOL:automatic];;"brain anatomical structure of midbrain" EXACT [OBOL:automatic];;"brain biological structure of midbrain" EXACT [OBOL:automatic];;"midbrain anatomical structure of brain" EXACT [OBOL:automatic];;"midbrain biological structure of brain" EXACT [OBOL:automatic];;"midbrain brain anatomical structure" EXACT [OBOL:automatic];;"midbrain brain biological structure" EXACT [OBOL:automatic];;"midbrain neuraxis segment" EXACT [OBOL:automatic];;"midbrain regional part of brain" EXACT [OBOL:automatic];;"midbrain segment" EXACT [FMA:61997];;"midbrain segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of midbrain" EXACT [OBOL:automatic];;"regional part of brain of midbrain" EXACT [OBOL:automatic];;"segment of brain of midbrain" EXACT [OBOL:automatic];;"segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002950
|is_a=UBERON:0002616
|is_obsolete=
|located_in=
|located_in=
|name=regional part of midbrain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001891
|part_of=UBERON:0001891
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anatomical structure of brain of midbrain" EXACT [OBOL:automatic];;"biological structure of brain of midbrain" EXACT [OBOL:automatic];;"brain anatomical structure of midbrain" EXACT [OBOL:automatic];;"brain biological structure of midbrain" EXACT [OBOL:automatic];;"midbrain anatomical structure of brain" EXACT [OBOL:automatic];;"midbrain biological structure of brain" EXACT [OBOL:automatic];;"midbrain brain anatomical structure" EXACT [OBOL:automatic];;"midbrain brain biological structure" EXACT [OBOL:automatic];;"midbrain neuraxis segment" EXACT [OBOL:automatic];;"midbrain regional part of brain" EXACT [OBOL:automatic];;"midbrain segment" EXACT [FMA:61997];;"midbrain segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of midbrain" EXACT [OBOL:automatic];;"regional part of brain of midbrain" EXACT [OBOL:automatic];;"segment of brain of midbrain" EXACT [OBOL:automatic];;"segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
|union_of=
|xref=FMA:61997;;NIF_GrossAnatomy:birnlex_763
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:regional part of midbrain
Namespace:FANTOM
Definition:"A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:61997

NIF_GrossAnatomy:birnlex_763
Synonyms: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic]
"biological structure of brain of midbrain" EXACT [OBOL:automatic]
"brain anatomical structure of midbrain" EXACT [OBOL:automatic]
"brain biological structure of midbrain" EXACT [OBOL:automatic]
"midbrain anatomical structure of brain" EXACT [OBOL:automatic]
"midbrain biological structure of brain" EXACT [OBOL:automatic]
"midbrain brain anatomical structure" EXACT [OBOL:automatic]
"midbrain brain biological structure" EXACT [OBOL:automatic]
"midbrain neuraxis segment" EXACT [OBOL:automatic]
"midbrain regional part of brain" EXACT [OBOL:automatic]
"midbrain segment" EXACT [FMA:61997]
"midbrain segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of midbrain" EXACT [OBOL:automatic]
"regional part of brain of midbrain" EXACT [OBOL:automatic]
"segment of brain of midbrain" EXACT [OBOL:automatic]
"segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002950 (regional part of midbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebcp5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebcp5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebcp59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebcp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebcp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebcp59@ANK3
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebcp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebcp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebcp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebcp@chr10:68718064..68718067, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1bp@chr5:57935348..57935354, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9p6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9p@chr16:57309513..57309516, -
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624p@chr14:95727527..95727529, -
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31bap8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr9:79516011..79516022, -
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31bap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31bap8@OMG
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31bap@chr9:79516011..79516022, -
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chr9:108178201..108178203, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chrX:28627633..28627642, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205cp@chr9:108178201..108178203, +
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr20:52570026..52570037, -
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr3:50717966..50717971, +
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bbp@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bbp@chr20:52570026..52570037, -
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749p2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749p10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749p10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749p@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749p@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749p@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749p21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749p@chr22:48980473..48980481, +
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749p@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749p@chr17:3479944..3479947, -
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749p2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749p@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749p@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749p@chr1:161275096..161275109, -
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749p@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749p@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749p21@PLEKHG1
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbep@chr19:40804786..40804795, -
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbep@chr19:40804786..40804795, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43p4@C5orf64
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43p@chr4:139891920..139891924, -
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2dp@chr17:71046459..71046462, -
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471dp19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_605c9bbf4e7696c6f9c981d61308471dp4@SLC24A2
2.21e-40FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_605c9bbf4e7696c6f9c981d61308471dp20@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471dp19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_605c9bbf4e7696c6f9c981d61308471dp@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_605c9bbf4e7696c6f9c981d61308471dp@chrX:103046993..103046994, +

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