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{{UBERON
{{UBERON
|id=UBERON:0003069
|alt_id=UBERON:XAO_0000223-ZFA_0000138
|name=otic placode
|namespace=
|def="A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175]
|xref=AAO:0011079;;EFO:0003429;;EHDAA:506;;EHDAA2:0001339;;EMAPA:16195;;ncithesaurus:Otic_Placodes;;TAO:0000138;;VHOG:0000235;;XAO:0000223;;ZFA:0000138
|is_a=UBERON:0003067;;UBERON:0005085
|synonym="auditory placode" RELATED [];;"ear placode" RELATED [];;"ear/otic placode" RELATED []
|comment=With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175]
|comment=With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175]
|alt_id=UBERON:XAO_0000223-ZFA_0000138
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003069
|is_a=UBERON:0003067
|is_obsolete=
|located_in=
|located_in=
|name=otic placode
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001690
|part_of=UBERON:0001690
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="auditory placode" RELATED [];;"ear placode" RELATED [];;"ear/otic placode" RELATED []
|union_of=
|xref=AAO:0011079;;EFO:0003429;;EHDAA2:0001339;;EHDAA:506;;EMAPA:16195;;ncithesaurus:Otic_Placodes;;TAO:0000138;;VHOG:0000235;;XAO:0000223;;ZFA:0000138
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:otic placode
Namespace:FANTOM
Definition:"A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175]
Xrefs:
links:

AAO:0011079
EFO:0003429
EHDAA2:0001339
EHDAA:506
EMAPA:16195
ncithesaurus:Otic_Placodes
TAO:0000138
VHOG:0000235
XAO:0000223

ZFA:0000138
Synonyms: "auditory placode" RELATED []
"ear placode" RELATED []
"ear/otic placode" RELATED []
Comments:With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175]
Alt_id: UBERON:XAO_0000223-ZFA_0000138
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003067(dorsolateral placode)
part_of:UBERON:0001690(ear)



Children

develops from:UBERON:0009123 (otic cup)
part of:UBERON:0003249 (epithelium of otic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003069 (otic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_79a6708211b885bd34d9bea04e5ffea8p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_79a6708211b885bd34d9bea04e5ffea8p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_79a6708211b885bd34d9bea04e5ffea8p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_79a6708211b885bd34d9bea04e5ffea8p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_79a6708211b885bd34d9bea04e5ffea8p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_79a6708211b885bd34d9bea04e5ffea8p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_79a6708211b885bd34d9bea04e5ffea8p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_79a6708211b885bd34d9bea04e5ffea8p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_79a6708211b885bd34d9bea04e5ffea8p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_79a6708211b885bd34d9bea04e5ffea8p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_79a6708211b885bd34d9bea04e5ffea8p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_79a6708211b885bd34d9bea04e5ffea8p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_79a6708211b885bd34d9bea04e5ffea8p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_79a6708211b885bd34d9bea04e5ffea8p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_79a6708211b885bd34d9bea04e5ffea8p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_79a6708211b885bd34d9bea04e5ffea8p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_79a6708211b885bd34d9bea04e5ffea8p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_79a6708211b885bd34d9bea04e5ffea8p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_79a6708211b885bd34d9bea04e5ffea8p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_79a6708211b885bd34d9bea04e5ffea8p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_79a6708211b885bd34d9bea04e5ffea8p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_79a6708211b885bd34d9bea04e5ffea8p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_79a6708211b885bd34d9bea04e5ffea8p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_79a6708211b885bd34d9bea04e5ffea8p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_79a6708211b885bd34d9bea04e5ffea8p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_79a6708211b885bd34d9bea04e5ffea8p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_79a6708211b885bd34d9bea04e5ffea8p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_79a6708211b885bd34d9bea04e5ffea8p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_79a6708211b885bd34d9bea04e5ffea8p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_79a6708211b885bd34d9bea04e5ffea8p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_79a6708211b885bd34d9bea04e5ffea8p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_79a6708211b885bd34d9bea04e5ffea8p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_79a6708211b885bd34d9bea04e5ffea8p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_79a6708211b885bd34d9bea04e5ffea8p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_79a6708211b885bd34d9bea04e5ffea8p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_79a6708211b885bd34d9bea04e5ffea8p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_79a6708211b885bd34d9bea04e5ffea8p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_79a6708211b885bd34d9bea04e5ffea8p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_79a6708211b885bd34d9bea04e5ffea8p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_79a6708211b885bd34d9bea04e5ffea8p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_79a6708211b885bd34d9bea04e5ffea8p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_79a6708211b885bd34d9bea04e5ffea8p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_79a6708211b885bd34d9bea04e5ffea8p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_79a6708211b885bd34d9bea04e5ffea8p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_79a6708211b885bd34d9bea04e5ffea8p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_79a6708211b885bd34d9bea04e5ffea8p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_79a6708211b885bd34d9bea04e5ffea8p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_79a6708211b885bd34d9bea04e5ffea8p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_79a6708211b885bd34d9bea04e5ffea8p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_79a6708211b885bd34d9bea04e5ffea8p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_79a6708211b885bd34d9bea04e5ffea8p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_79a6708211b885bd34d9bea04e5ffea8p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_79a6708211b885bd34d9bea04e5ffea8p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_79a6708211b885bd34d9bea04e5ffea8p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_79a6708211b885bd34d9bea04e5ffea8p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_79a6708211b885bd34d9bea04e5ffea8p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_79a6708211b885bd34d9bea04e5ffea8p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_79a6708211b885bd34d9bea04e5ffea8p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_79a6708211b885bd34d9bea04e5ffea8p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_79a6708211b885bd34d9bea04e5ffea8p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_79a6708211b885bd34d9bea04e5ffea8p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_79a6708211b885bd34d9bea04e5ffea8p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_79a6708211b885bd34d9bea04e5ffea8p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_79a6708211b885bd34d9bea04e5ffea8p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_79a6708211b885bd34d9bea04e5ffea8p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_79a6708211b885bd34d9bea04e5ffea8p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_79a6708211b885bd34d9bea04e5ffea8p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_79a6708211b885bd34d9bea04e5ffea8p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_79a6708211b885bd34d9bea04e5ffea8p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_79a6708211b885bd34d9bea04e5ffea8p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_79a6708211b885bd34d9bea04e5ffea8p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_79a6708211b885bd34d9bea04e5ffea8p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_79a6708211b885bd34d9bea04e5ffea8p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_79a6708211b885bd34d9bea04e5ffea8p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_79a6708211b885bd34d9bea04e5ffea8p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_79a6708211b885bd34d9bea04e5ffea8p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_79a6708211b885bd34d9bea04e5ffea8p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_79a6708211b885bd34d9bea04e5ffea8p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_79a6708211b885bd34d9bea04e5ffea8p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_79a6708211b885bd34d9bea04e5ffea8p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_79a6708211b885bd34d9bea04e5ffea8p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_79a6708211b885bd34d9bea04e5ffea8p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_79a6708211b885bd34d9bea04e5ffea8p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_79a6708211b885bd34d9bea04e5ffea8p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_79a6708211b885bd34d9bea04e5ffea8p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_79a6708211b885bd34d9bea04e5ffea8p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_79a6708211b885bd34d9bea04e5ffea8p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_79a6708211b885bd34d9bea04e5ffea8p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_79a6708211b885bd34d9bea04e5ffea8p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_79a6708211b885bd34d9bea04e5ffea8p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_79a6708211b885bd34d9bea04e5ffea8p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_79a6708211b885bd34d9bea04e5ffea8p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_79a6708211b885bd34d9bea04e5ffea8p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_79a6708211b885bd34d9bea04e5ffea8p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_79a6708211b885bd34d9bea04e5ffea8p@chr12:109905468..109905474, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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