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{{UBERON
{{UBERON
|id=UBERON:0003672
|alt_id=
|name=dentition
|namespace=
|def=
|xref=AAO:0000126;;FMA:75150;;GAID:1249;;MESH:A.14.254;;ncithesaurus:Dentition;;OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA;;SCTID:245543004
|is_a=UBERON:0000078;;UBERON:0000477
|synonym="dentes" EXACT [FMA:75150, FMA:TA];;"set of teeth" EXACT [FMA:75150];;"teeth" EXACT [FMA:75150];;"teeth" RELATED [];;"teeth set" EXACT [FMA:75150]
|comment=In FMA this is an anatomical set
|comment=In FMA this is an anatomical set
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003672
|is_a=UBERON:0000477 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000165;;UBERON:0003129
|name=dentition
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0010323
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO]" xsd:string
|subset=
|synonym="dentes" EXACT [FMA:75150, FMA:TA];;"set of teeth" EXACT [FMA:75150];;"teeth" EXACT [FMA:75150];;"teeth" RELATED [];;"teeth set" EXACT [FMA:75150]
|union_of=
|xref=AAO:0000126;;FMA:75150;;GAID:1249;;MESH:A.14.254;;ncithesaurus:Dentition;;OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA;;SCTID:245543004
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:dentition
Namespace:FANTOM
Xrefs:
links:

AAO:0000126
FMA:75150
GAID:1249
MESH:A.14.254
ncithesaurus:Dentition
OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA

SCTID:245543004
Synonyms: "dentes" EXACT [FMA:75150, FMA:TA]
"set of teeth" EXACT [FMA:75150]
"teeth" EXACT [FMA:75150]
"teeth" RELATED []
"teeth set" EXACT [FMA:75150]
Comments:In FMA this is an anatomical set

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001758 (periodontium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003672 (dentition), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.06e-63FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_6fd29dc08b83deb0fd2cc23c2a67f343p1@ENST00000427892, p1@uc001dgp.1
7.06e-63FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_6fd29dc08b83deb0fd2cc23c2a67f343p1@ENST00000427892, p1@uc001dgp.1
1.23e-62FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_04c3197dc26c93de4422baea6fabadb1p@chr1:75599683..75599699, -
1.23e-62FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_04c3197dc26c93de4422baea6fabadb1p@chr1:75599683..75599699, -
2.45e-58FFCP PHASE1:Hg19::chr6:707779..707821,+#_20a02fdfeb773a63fa0032a8519aeef7p@chr6:707779..707821, +
2.45e-58FFCP PHASE2:Hg19::chr6:707779..707821,+#_20a02fdfeb773a63fa0032a8519aeef7p@chr6:707779..707821, +
4.63e-53FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_b8f01f1affd3bbab08bde20e3272386dp@chr1:75599672..75599682, -
4.63e-53FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_b8f01f1affd3bbab08bde20e3272386dp@chr1:75599672..75599682, -
9.31e-47FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_795f4020d399ff06c46f3222a6abb745p2@LHX8
9.31e-47FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_795f4020d399ff06c46f3222a6abb745p2@LHX8
4.34e-43FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_b74017cbd217d6b9de73d58cc4a7497bp1@LHX8
4.34e-43FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_b74017cbd217d6b9de73d58cc4a7497bp1@LHX8
1.34e-37FFCP PHASE1:Hg19::chr6:129908113..129908144,-#_d54a7b4b231548f8cb9f129f27fbf753p@chr6:129908113..129908144, -
1.34e-37FFCP PHASE2:Hg19::chr6:129908113..129908144,-#_d54a7b4b231548f8cb9f129f27fbf753p@chr6:129908113..129908144, -
5.69e-35FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_3f6a4127d08c81b637c67442f726e9cbp@chr2:172953513..172953549, -
5.69e-35FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_3f6a4127d08c81b637c67442f726e9cbp@chr2:172953513..172953549, -
1.19e-32FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_677055ff33e5a1d49a842e9ee3144393p4@FOXF2
1.19e-32FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_677055ff33e5a1d49a842e9ee3144393p4@FOXF2
2.68e-31FFCP PHASE1:Hg19::chr18:34273182..34273194,+#_7435ce963762c0d0467eee6b91ffcaeep6@FHOD3
2.68e-31FFCP PHASE2:Hg19::chr18:34273182..34273194,+#_7435ce963762c0d0467eee6b91ffcaeep6@FHOD3
2.78e-30FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_c242d85e9906fff3f71b72f776e249b0p18@SH3D19
2.78e-30FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_c242d85e9906fff3f71b72f776e249b0p18@SH3D19
7.33e-29FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_4790bbd693fbaf2cb97806ec2f4f89f4p@chr6:1389613..1389637, -
7.33e-29FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_4790bbd693fbaf2cb97806ec2f4f89f4p@chr6:1389613..1389637, -
2.08e-27FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_2a3f2c0c1d028b3791d662601bea3817p@chr12:115777087..115777091, +
2.08e-27FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_2a3f2c0c1d028b3791d662601bea3817p@chr12:115777087..115777091, +
2.21e-25FFCP PHASE1:Hg19::chr11:7987028..7987043,-#_a37e1d71b2992db2bcff2bebb3924f2fp2@NLRP10
2.21e-25FFCP PHASE2:Hg19::chr11:7987028..7987043,-#_a37e1d71b2992db2bcff2bebb3924f2fp2@NLRP10
4.34e-23FFCP PHASE1:Hg19::chr1:75600979..75601005,+#_e180e82827953ddd3de99806c772a8bbp@chr1:75600979..75601005, +
4.34e-23FFCP PHASE2:Hg19::chr1:75600979..75601005,+#_e180e82827953ddd3de99806c772a8bbp@chr1:75600979..75601005, +
3.51e-22FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_ce15ac545c1295f42800b2098efe3e9bp@chr18:65337698..65337712, +
3.51e-22FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_ce15ac545c1295f42800b2098efe3e9bp@chr18:65337698..65337712, +
6.23e-22FFCP PHASE1:Hg19::chr1:31882992..31883005,+#_0a8cc6e9abafaf5e2ded3119b36bb983p14@SERINC2
6.23e-22FFCP PHASE2:Hg19::chr1:31882992..31883005,+#_0a8cc6e9abafaf5e2ded3119b36bb983p14@SERINC2
4.63e-21FFCP PHASE1:Hg19::chr9:96717678..96717689,-#_887be60819d2493dd56164302bc2b1a4p2@BARX1
4.63e-21FFCP PHASE2:Hg19::chr9:96717678..96717689,-#_887be60819d2493dd56164302bc2b1a4p2@BARX1
5.39e-21FFCP PHASE1:Hg19::chr10:28034772..28034783,-#_a08a77e5fa03e001556f813931d10aa7p4@MKX
5.39e-21FFCP PHASE2:Hg19::chr10:28034772..28034783,-#_a08a77e5fa03e001556f813931d10aa7p4@MKX
4.99e-20FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_21549b66b9cfae9819e90a16a2403a69p2@PAX9
4.99e-20FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_21549b66b9cfae9819e90a16a2403a69p2@PAX9
5.89e-20FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_6b5151363371a78f277cfe1567085ad3p@chr1:75602768..75602785, +
5.89e-20FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_6b5151363371a78f277cfe1567085ad3p@chr1:75602768..75602785, +
6.5e-20FFCP PHASE1:Hg19::chr6:148761434..148761452,+#_ab46120c1a50e4b7709f0036b2bc0cb2p11@SASH1
6.5e-20FFCP PHASE2:Hg19::chr6:148761434..148761452,+#_ab46120c1a50e4b7709f0036b2bc0cb2p11@SASH1
3.13e-18FFCP PHASE1:Hg19::chr8:57354324..57354335,-#_48c2a4120ca077fbdddbf1a38796a971p@chr8:57354324..57354335, -
3.13e-18FFCP PHASE2:Hg19::chr8:57354324..57354335,-#_48c2a4120ca077fbdddbf1a38796a971p@chr8:57354324..57354335, -
3.96e-18FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_777f316e9b933319c4a0ac0ebf6afd69p@chr1:83982415..83982420, +
3.96e-18FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_777f316e9b933319c4a0ac0ebf6afd69p@chr1:83982415..83982420, +
4.73e-18FFCP PHASE1:Hg19::chr10:24738381..24738397,+#_7f20235054cd245965cd6bb45ded5adap17@KIAA1217
4.73e-18FFCP PHASE2:Hg19::chr10:24738381..24738397,+#_7f20235054cd245965cd6bb45ded5adap17@KIAA1217
6.46e-18FFCP PHASE1:Hg19::chr4:108204864..108204887,-#_a59598cea5537d73d52717d81dd0f14ap3@DKK2
6.46e-18FFCP PHASE2:Hg19::chr4:108204864..108204887,-#_a59598cea5537d73d52717d81dd0f14ap3@DKK2
9.07e-18FFCP PHASE1:Hg19::chr1:75602749..75602758,+#_bf8aa435544822780bef1f0056ec73cbp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602749..75602758,+#_bf8aa435544822780bef1f0056ec73cbp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE1:Hg19::chr4:14094655..14094663,+#_bf8aa435544822780bef1f0056ec73cbp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602005..75602017,+#_bf8aa435544822780bef1f0056ec73cbp@chr1:75602005..75602017, +
9.07e-18FFCP PHASE2:Hg19::chr4:14094655..14094663,+#_bf8aa435544822780bef1f0056ec73cbp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602005..75602017,+#_bf8aa435544822780bef1f0056ec73cbp@chr1:75602005..75602017, +
9.28e-18FFCP PHASE1:Hg19::chr6:116479897..116479942,-#_517a8761a094c6cb3c8f74700ae82a9cp2@COL10A1
9.28e-18FFCP PHASE2:Hg19::chr6:116479897..116479942,-#_517a8761a094c6cb3c8f74700ae82a9cp2@COL10A1
1.22e-17FFCP PHASE1:Hg19::chr10:15761954..15761965,-#_69e74c8d2463e231bb146834a4d2ade8p7@ITGA8
1.22e-17FFCP PHASE2:Hg19::chr10:15761954..15761965,-#_69e74c8d2463e231bb146834a4d2ade8p7@ITGA8
1.85e-17FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_7d3644e7a6f569536f4c2b7fd7e5d9a2p@chr1:241577071..241577081, +
1.85e-17FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_7d3644e7a6f569536f4c2b7fd7e5d9a2p@chr1:241577071..241577081, +
3.81e-17FFCP PHASE2:Hg19::chr6:1389647..1389668,-#_7059db5319c9ff0601865f77ea01c03ep@chr6:1389647..1389668, -
3.81e-17FFCP PHASE1:Hg19::chr6:1389647..1389668,-#_7059db5319c9ff0601865f77ea01c03ep@chr6:1389647..1389668, -
4.15e-17FFCP PHASE1:Hg19::chr1:68257383..68257394,-#_8f19bcce236a10e789dfbcad8b5bc92ap@chr1:68257383..68257394, -
4.15e-17FFCP PHASE2:Hg19::chr1:68257383..68257394,-#_8f19bcce236a10e789dfbcad8b5bc92ap@chr1:68257383..68257394, -
6.03e-17FFCP PHASE1:Hg19::chr6:148761457..148761478,+#_874f18453f04db1bcb3a734061072a66p8@SASH1
6.03e-17FFCP PHASE2:Hg19::chr6:148761457..148761478,+#_874f18453f04db1bcb3a734061072a66p8@SASH1
2.11e-16FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_6a066440ae596bb0ed78421063d19d54p@chr4:47857451..47857469, -
2.11e-16FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_6a066440ae596bb0ed78421063d19d54p@chr4:47857451..47857469, -
2.59e-16FFCP PHASE1:Hg19::chr15:33406335..33406350,-#_707085f66a3048d495e8a5541954b0fcp@chr15:33406335..33406350, -
2.59e-16FFCP PHASE2:Hg19::chr15:33406335..33406350,-#_707085f66a3048d495e8a5541954b0fcp@chr15:33406335..33406350, -
3.17e-16FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_322017f4217222e1e0389c0cd64c7614p1@ENST00000555639
3.17e-16FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_322017f4217222e1e0389c0cd64c7614p1@ENST00000555639
4.64e-16FFCP PHASE1:Hg19::chr18:34273196..34273214,+#_534db143c15f853bd666d8dc3c86e66ap2@FHOD3
4.64e-16FFCP PHASE2:Hg19::chr18:34273196..34273214,+#_534db143c15f853bd666d8dc3c86e66ap2@FHOD3
7.23e-16FFCP PHASE2:Hg19::chr3:37204870..37204881,-#_e5f3fb7aa42ee9cfc30f53839fd53ee9p@chr3:37204870..37204881, -
7.23e-16FFCP PHASE1:Hg19::chr3:37204870..37204881,-#_e5f3fb7aa42ee9cfc30f53839fd53ee9p@chr3:37204870..37204881, -
1.02e-15FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_9d9600e99e90e4c936f65adfb3fe232fp1@ENST00000449986
1.02e-15FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_9d9600e99e90e4c936f65adfb3fe232fp1@ENST00000449986
1.12e-15FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_d989115b9f3d73a38b389706eb365b30p@chr4:152090554..152090566, +
1.12e-15FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_d989115b9f3d73a38b389706eb365b30p@chr4:152090554..152090566, +
1.13e-15FFCP PHASE1:Hg19::chr18:59685444..59685459,-#_a367d8f8bee16e978668e7e86568d5e6p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE1:Hg19::chr8:57354211..57354220,+#_a367d8f8bee16e978668e7e86568d5e6p@chr8:57354211..57354220, +
1.13e-15FFCP PHASE2:Hg19::chr18:59685444..59685459,-#_a367d8f8bee16e978668e7e86568d5e6p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE2:Hg19::chr8:57354211..57354220,+#_a367d8f8bee16e978668e7e86568d5e6p@chr8:57354211..57354220, +
1.31e-15FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_7066a82407fd5eb2d786afc92b51e8fcp4@LHX8
1.31e-15FFCP PHASE1:Hg19::chr4:13890014..13890023,+#_7066a82407fd5eb2d786afc92b51e8fcp@chr4:13890014..13890023, +
1.31e-15FFCP PHASE2:Hg19::chr4:13890014..13890023,+#_7066a82407fd5eb2d786afc92b51e8fcp@chr4:13890014..13890023, +
1.31e-15FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_7066a82407fd5eb2d786afc92b51e8fcp4@LHX8
2.33e-15FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_6c405d30ca2828e4ea98da98aaf477c9p@chr10:28033614..28033628, -
2.33e-15FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_6c405d30ca2828e4ea98da98aaf477c9p@chr10:28033614..28033628, -
4.6e-15FFCP PHASE2:Hg19::chr8:57354251..57354262,-#_e904e8ab8511bf63301943fc26697b75p@chr8:57354251..57354262, -
4.6e-15FFCP PHASE1:Hg19::chr8:57354251..57354262,-#_e904e8ab8511bf63301943fc26697b75p@chr8:57354251..57354262, -
5.3e-15FFCP PHASE1:Hg19::chr7:134005080..134005095,-#_5b92f41b1e92964dc500ce3d73f1a749p@chr7:134005080..134005095, -
5.3e-15FFCP PHASE2:Hg19::chr7:134005080..134005095,-#_5b92f41b1e92964dc500ce3d73f1a749p@chr7:134005080..134005095, -
5.54e-15FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_38b0030e2f38833aab5f168fd1fc7661p@chr17:78808278..78808309, -
5.54e-15FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_38b0030e2f38833aab5f168fd1fc7661p@chr17:78808278..78808309, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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