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{{UBERON
{{UBERON
|id=UBERON:0004904
|alt_id=
|name=optic nerve
|namespace=
|def="A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
|xref=BTO:0000966;;EV:0100351;;FBbt:00001956;;RETIRED_EHDAA2:0001314;;SCTID:180938001;;TADS:0000232
|is_a=UBERON:0001785
|synonym="optic nerve (generic)" EXACT []
|comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
|comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004904
|is_a=UBERON:0001021
|is_obsolete=
|located_in=
|located_in=
|name=nerve connecting eye with brain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002104
|part_of=UBERON:0002104
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=grouping_class
|synonym="optic nerve" BROAD [BTO:0000966];;"optic nerve (generic)" EXACT []
|union_of=
|xref=BTO:0000966;;EV:0100351;;FBbt:00001956;;TADS:0000232
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:nerve connecting eye with brain
Namespace:FANTOM
Definition:"A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
Xrefs:
links:

BTO:0000966
EV:0100351
FBbt:00001956

TADS:0000232
Synonyms: "optic nerve" BROAD [BTO:0000966]
"optic nerve (generic)" EXACT []
Comments:for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001021(nerve)
part_of:UBERON:0002104(visual system)



Children

is a:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004904 (nerve connecting eye with brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr7:15056365..15056368, -
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_284345d22cda2bdcf64430d9e57eebc0p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_284345d22cda2bdcf64430d9e57eebc0p9@TCF25
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_284345d22cda2bdcf64430d9e57eebc0p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_284345d22cda2bdcf64430d9e57eebc0p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_284345d22cda2bdcf64430d9e57eebc0p22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_284345d22cda2bdcf64430d9e57eebc0p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_284345d22cda2bdcf64430d9e57eebc0p4@SNORD111B
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_284345d22cda2bdcf64430d9e57eebc0p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_284345d22cda2bdcf64430d9e57eebc0p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_284345d22cda2bdcf64430d9e57eebc0p10@ALK
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_284345d22cda2bdcf64430d9e57eebc0p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_284345d22cda2bdcf64430d9e57eebc0p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_284345d22cda2bdcf64430d9e57eebc0p2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_284345d22cda2bdcf64430d9e57eebc0p@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_284345d22cda2bdcf64430d9e57eebc0p59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_284345d22cda2bdcf64430d9e57eebc0p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_284345d22cda2bdcf64430d9e57eebc0p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_284345d22cda2bdcf64430d9e57eebc0p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_284345d22cda2bdcf64430d9e57eebc0p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_284345d22cda2bdcf64430d9e57eebc0p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_284345d22cda2bdcf64430d9e57eebc0p9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_284345d22cda2bdcf64430d9e57eebc0p@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_284345d22cda2bdcf64430d9e57eebc0p@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_284345d22cda2bdcf64430d9e57eebc0p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_284345d22cda2bdcf64430d9e57eebc0p3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_284345d22cda2bdcf64430d9e57eebc0p@chr11:30166055..30166059, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_284345d22cda2bdcf64430d9e57eebc0p25@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_284345d22cda2bdcf64430d9e57eebc0p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_284345d22cda2bdcf64430d9e57eebc0p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_284345d22cda2bdcf64430d9e57eebc0p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:165170873..165170919, -
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_284345d22cda2bdcf64430d9e57eebc0p12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_284345d22cda2bdcf64430d9e57eebc0p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_284345d22cda2bdcf64430d9e57eebc0p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:78718132..78718157, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:109466651..109466653, +
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_284345d22cda2bdcf64430d9e57eebc0p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:74167667..74167687, -

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