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{{UBERON
{{UBERON
|id=UBERON:0004905
|alt_id=
|name=joint
|namespace=
|def="anatomical cluster that connects limbs or skeletal elements." []
|xref=FBbt:00004645;;SCTID:302536002
|is_a=UBERON:0000477
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." []
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004905
|is_a=UBERON:0000477
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=articulation
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004770
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=FBbt:00005811
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:articulation
Namespace:FANTOM
Definition:"anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." []
Xrefs:
links:
FBbt:00005811
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster)
part_of:UBERON:0004770(articular system)



Children

is a:UBERON:0000982 (skeletal joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004905 (articulation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.05e-102FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_567b588d0a967b8617a1ce918bf0d94fp@chr3:174737010..174737023, +
5.05e-102FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_567b588d0a967b8617a1ce918bf0d94fp@chr3:174737010..174737023, +
6.68e-88FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c89babbca9e96845e4367e95a5d77826p4@PAX1
6.68e-88FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c89babbca9e96845e4367e95a5d77826p4@PAX1
5.7e-81FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_1c1bf36599a61bb67d97e2ba59558431p15@SNED1
5.7e-81FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_1c1bf36599a61bb67d97e2ba59558431p15@SNED1
3.87e-62FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_88bc4a3195026450c0e08f80f7c8874bp@chr5:30104176..30104187, -
3.87e-62FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_88bc4a3195026450c0e08f80f7c8874bp@chr5:30104176..30104187, -
5.39e-52FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_6c683246e17c209d0870fedc45e39db3p1@ENST00000436845
5.39e-52FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_6c683246e17c209d0870fedc45e39db3p1@ENST00000436845
5.25e-50FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_bef5d061d0f3b554313410b724e2842dp6@SIX4
5.25e-50FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_bef5d061d0f3b554313410b724e2842dp6@SIX4
1.71e-49FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_3b5f2ff51a00575a1ac94cad2f4d3a9ep4@NKX3-2
1.71e-49FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_3b5f2ff51a00575a1ac94cad2f4d3a9ep4@NKX3-2
4.01e-47FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_ada6dcb0cd784958bbc1b9fa2cac3049p@chr5:140887761..140887777, +
4.01e-47FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_ada6dcb0cd784958bbc1b9fa2cac3049p@chr5:140887761..140887777, +
3.73e-45FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_f66bf709d7343c3f7430bb72763608f2p@chr2:242009429..242009432, +
3.73e-45FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_f66bf709d7343c3f7430bb72763608f2p@chr2:242009429..242009432, +
5.04e-45FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_fef2d8097403927e22f25d870bee5e91p@chr9:114135497..114135526, -
5.04e-45FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_fef2d8097403927e22f25d870bee5e91p@chr9:114135497..114135526, -
1.45e-44FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_3b898eba52515cb8908e232930ce952ap@chr2:241897125..241897142, -
1.45e-44FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_3b898eba52515cb8908e232930ce952ap@chr2:241897125..241897142, -
5.55e-44FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_9d8caf886b1ba2f0ab6dcb82cef0c4e5p@chr3:80727046..80727051, -
5.55e-44FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_9d8caf886b1ba2f0ab6dcb82cef0c4e5p@chr3:80727046..80727051, -
5.66e-42FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_a879895b0685a5c08fc99d91c9489341p@chr7:100202784..100202796, -
5.66e-42FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_a879895b0685a5c08fc99d91c9489341p@chr7:100202784..100202796, -
9.63e-42FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_7030a19be5415122ae0d3e89f35a93f5p20@CAPZB
9.63e-42FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_7030a19be5415122ae0d3e89f35a93f5p20@CAPZB
2.13e-39FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_9c69c6bbdbca1a3607d933f8756a6b80p@chr1:19778678..19778689, -
2.13e-39FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_9c69c6bbdbca1a3607d933f8756a6b80p@chr1:19778678..19778689, -
1.04e-37FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_61b6698e82d02db6cb6edeb2079ecf17p@chr2:241897189..241897221, -
1.04e-37FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_61b6698e82d02db6cb6edeb2079ecf17p@chr2:241897189..241897221, -
1.51e-37FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_d5450222d393ec5655d818fa48dc2f6ep22@SNED1
1.51e-37FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_d5450222d393ec5655d818fa48dc2f6ep22@SNED1
3.4e-36FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_e6ef11d4dcc4f36b28cf74eeccff0c03p1@uc010aki.1
3.4e-36FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_e6ef11d4dcc4f36b28cf74eeccff0c03p1@uc010aki.1
6.5e-34FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_64cae23e75291ad9ced40449cb8e82c8p31@SEMA3C
6.5e-34FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_64cae23e75291ad9ced40449cb8e82c8p31@SEMA3C
9.08e-34FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_0ef087288adf8fb639309406be12e98fp3@uc010aki.1
9.08e-34FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_0ef087288adf8fb639309406be12e98fp3@uc010aki.1
1.15e-32FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_491a94c91be424e61d8326557c17cda3p3@PAX1
1.15e-32FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_491a94c91be424e61d8326557c17cda3p3@PAX1
1.77e-32FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b43c3bc0375ca760283e44c6c4c10ea5p@chr10:81923378..81923389, -
1.77e-32FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b43c3bc0375ca760283e44c6c4c10ea5p@chr10:81923378..81923389, -
2.19e-32FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_d99d88de4cc4f844c6509c7f9a31d405p@chr2:12248310..12248334, -
2.19e-32FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_d99d88de4cc4f844c6509c7f9a31d405p@chr2:12248310..12248334, -
8.44e-32FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_a09fc752e8c8b45003e4642c9ecb5df0p19@HDAC9
8.44e-32FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_a09fc752e8c8b45003e4642c9ecb5df0p19@HDAC9
3.34e-31FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_e27500115dfbd7504d1efecd8717957ep5@WISP2
3.34e-31FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_e27500115dfbd7504d1efecd8717957ep5@WISP2
1.1e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_53c0f4501b1e517c8671d64046aeaa90p@chr7:158224707..158224729, -
1.1e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_53c0f4501b1e517c8671d64046aeaa90p@chr7:158224707..158224729, -
4.93e-30FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_e1793585804b499556d8f7895e729d39p@chr1:65888177..65888194, +
4.93e-30FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_e1793585804b499556d8f7895e729d39p@chr1:65888177..65888194, +
1.3e-29FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_018ee048f847ee8bbf48b47138b069a0p5@SNED1
1.3e-29FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_018ee048f847ee8bbf48b47138b069a0p5@SNED1
6.39e-29FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_c705c07192c8f3caa0a1d1166d01499fp@chr17:38613285..38613298, -
6.39e-29FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_c705c07192c8f3caa0a1d1166d01499fp@chr17:38613285..38613298, -
6.71e-29FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_8cc0eb05885da34ffd103d5cb86ae9e6p34@LPAR1
6.71e-29FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_8cc0eb05885da34ffd103d5cb86ae9e6p34@LPAR1
1.23e-28FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_069053ecb620ca892c5c2c0ef54abafbp3@NKX3-2
1.23e-28FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_069053ecb620ca892c5c2c0ef54abafbp3@NKX3-2
1.72e-28FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_2b1e56c3dbb201347649dfa975f98cadp6@WISP2
1.72e-28FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_2b1e56c3dbb201347649dfa975f98cadp6@WISP2
1.13e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_bf04f571dcf4dbc6e38d3b8c072c5455p1@MGC27382
1.13e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_bf04f571dcf4dbc6e38d3b8c072c5455p1@MGC27382
3.37e-27FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_dfbc978b9bdeed6f4df5be6982b8ce51p18@HDAC9
3.37e-27FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_dfbc978b9bdeed6f4df5be6982b8ce51p18@HDAC9
9.5e-27FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_6d7050f391f99d7039feef32473c3575p@chr8:25337491..25337504, +
9.5e-27FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_6d7050f391f99d7039feef32473c3575p@chr8:25337491..25337504, +
2.17e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_20540e727c28c17cb73174be9930c38bp@chr14:61113228..61113233, -
2.17e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_20540e727c28c17cb73174be9930c38bp@chr14:61113228..61113233, -
5.22e-26FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134667..172134711, +
5.22e-26FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134667..172134711, +
5.22e-26FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134736..172134739, +
5.22e-26FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr12:130786785..130786827, -
5.22e-26FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr12:130786785..130786827, -
5.22e-26FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134736..172134739, +
5.22e-26FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134755..172134764, +
5.22e-26FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr9:33028063..33028067, -
5.22e-26FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_1afb8a7c4d085aa4ced10c3100dd0e94p9@SKOR1
5.22e-26FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr2:181751144..181751146, +
5.22e-26FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr13:24914614..24914622, -
5.22e-26FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr1:172134755..172134764, +
5.22e-26FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr13:24914614..24914622, -
5.22e-26FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_1afb8a7c4d085aa4ced10c3100dd0e94p1@ENST00000517363
5.22e-26FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_1afb8a7c4d085aa4ced10c3100dd0e94p9@SKOR1
5.22e-26FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr2:181751144..181751146, +
5.22e-26FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_1afb8a7c4d085aa4ced10c3100dd0e94p1@ENST00000517363
5.22e-26FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_1afb8a7c4d085aa4ced10c3100dd0e94p@chr9:33028063..33028067, -
8.65e-26FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_fd5f24634853404a2c86ba988e324d9fp@chr18:22150956..22150983, +
8.65e-26FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_fd5f24634853404a2c86ba988e324d9fp5@PTGFR
8.65e-26FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_fd5f24634853404a2c86ba988e324d9fp@chr18:22150956..22150983, +
8.65e-26FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_fd5f24634853404a2c86ba988e324d9fp5@PTGFR
9.05e-26FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_50f959489ff16fe8307f6937d52094e4p7@GMDS
9.05e-26FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_50f959489ff16fe8307f6937d52094e4p7@GMDS
1.44e-25FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_e24a5248355fea29b213f98720a1905cp42@LPAR1
1.44e-25FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_e24a5248355fea29b213f98720a1905cp42@LPAR1
1.56e-25FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_4252e22713691d92b5d658811ddd36f7p@chr5:17743903..17743914, +
1.56e-25FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_4252e22713691d92b5d658811ddd36f7p@chr5:17743903..17743914, +

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