UBERON:0011216: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=organ system subdivision | |name=organ system subdivision | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000467 | |part_of=UBERON:0000467 | ||
Latest revision as of 18:10, 12 September 2014
| Name: | organ system subdivision | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical structure, which consists of a specific set of the members of (predominantly) one organ or organ part subclass interconnected by zones of continuity or body substances; is demarcated from other subdivisions of the same organ system by one or more zones of continuity or anatomical lines; together with other subdivisions of the same organ system, it constitutes an organ system. Examples: rib cage, facial skeleton, portal system, central nervous system, upper respiratory tract, muscle group of back." [FMA:67509] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| part_of: | UBERON:0000467(anatomical system) |
Children
| is a: | UBERON:0000010 (peripheral nervous system),UBERON:0000011 (parasympathetic nervous system),UBERON:0000012 (somatic nervous system),UBERON:0000075 (subdivision of skeletal system),UBERON:0001017 (central nervous system),UBERON:0002199 (integument),UBERON:0002410 (autonomic nervous system),UBERON:0010912 (subdivision of skeleton) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10012-101C3 (brain, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
... further results Mouse (Mus musculus)
- 10012-101C3 (brain, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011216 (organ system subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.65e-48 | FFCP PHASE2:Hg19::chr5:173472676..173472732,+#_e71c8dc7b887e7cdb3c2a9d5ae040c2e | p1@HMP19 |
| 7.65e-48 | FFCP PHASE1:Hg19::chr5:173472676..173472732,+#_e71c8dc7b887e7cdb3c2a9d5ae040c2e | p1@HMP19 |
| 1.34e-46 | FFCP PHASE1:Hg19::chr5:175298573..175298628,+#_623633fe50a3b6c98aa1ef9af9ecc2bd | p1@CPLX2 |
| 1.34e-46 | FFCP PHASE2:Hg19::chr5:175298573..175298628,+#_623633fe50a3b6c98aa1ef9af9ecc2bd | p1@CPLX2 |
| 1.49e-46 | FFCP PHASE1:Hg19::chr6:24126427..24126497,+#_6bc652c694f9799d53e03869c976b3fa | p1@NRSN1 |
| 1.49e-46 | FFCP PHASE2:Hg19::chr6:24126427..24126497,+#_6bc652c694f9799d53e03869c976b3fa | p1@NRSN1 |
| 1.7e-46 | FFCP PHASE2:Hg19::chr14:60097524..60097538,-#_356d7c2088a4d5cb7c42cfc69b4b094d | p3@RTN1 |
| 1.7e-46 | FFCP PHASE1:Hg19::chr14:60097524..60097538,-#_356d7c2088a4d5cb7c42cfc69b4b094d | p3@RTN1 |
| 2.14e-46 | FFCP PHASE1:Hg19::chr7:158380468..158380523,-#_b74f0c8ab0f40c4e60c89b6a8df28b02 | p2@PTPRN2 |
| 2.14e-46 | FFCP PHASE2:Hg19::chr7:158380468..158380523,-#_b74f0c8ab0f40c4e60c89b6a8df28b02 | p2@PTPRN2 |
| 3.89e-46 | FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_6918972bb8a64a510bd7e9edc8857d16 | p9@MAP2 |
| 3.89e-46 | FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_6918972bb8a64a510bd7e9edc8857d16 | p9@MAP2 |
| 3.4e-45 | FFCP PHASE1:Hg19::chr7:36446001..36446028,+#_47ff3ad8fcf48e9b4abb7c95f767d99f | p4@ANLN |
| 3.4e-45 | FFCP PHASE2:Hg19::chr7:36446001..36446028,+#_47ff3ad8fcf48e9b4abb7c95f767d99f | p4@ANLN |
| 4.96e-45 | FFCP PHASE2:Hg19::chr17:10741392..10741423,-#_82d7c8e98e172692c22e295c539afb01 | p1@PIRT |
| 4.96e-45 | FFCP PHASE1:Hg19::chr17:10741392..10741423,-#_82d7c8e98e172692c22e295c539afb01 | p1@PIRT |
| 6.23e-45 | FFCP PHASE2:Hg19::chr3:42190714..42190787,+#_9818ad0e39af6909804a7b370ba177c0 | p3@TRAK1 |
| 6.23e-45 | FFCP PHASE1:Hg19::chr3:42190714..42190787,+#_9818ad0e39af6909804a7b370ba177c0 | p3@TRAK1 |
| 9.63e-45 | FFCP PHASE2:Hg19::chrX:32173579..32173593,-#_1b37ca97e88ee61b0f162b5cc84e1cdc | p5@DMD |
| 9.63e-45 | FFCP PHASE1:Hg19::chrX:32173579..32173593,-#_1b37ca97e88ee61b0f162b5cc84e1cdc | p5@DMD |
| 1.05e-44 | FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_92e3ea0895b543d1a9c2ab50909abeac | p1@RFX4 |
| 1.05e-44 | FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_92e3ea0895b543d1a9c2ab50909abeac | p1@RFX4 |
| 3.23e-44 | FFCP PHASE2:Hg19::chr11:35441089..35441112,-#_6dda37545b4a93dc6751e6442f33df73 | p1@SLC1A2 |
| 3.23e-44 | FFCP PHASE1:Hg19::chr11:35441089..35441112,-#_6dda37545b4a93dc6751e6442f33df73 | p1@SLC1A2 |
| 3.42e-44 | FFCP PHASE2:Hg19::chr18:55019972..55020018,+#_686e6cdd9356c67698dbdecc7f161381 | p2@ST8SIA3 |
| 3.42e-44 | FFCP PHASE1:Hg19::chr18:55019972..55020018,+#_686e6cdd9356c67698dbdecc7f161381 | p2@ST8SIA3 |
| 4.95e-44 | FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_3e1fd39b899ac2c9402a9eef8660629c | p3@CTNND2 |
| 4.95e-44 | FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_3e1fd39b899ac2c9402a9eef8660629c | p3@CTNND2 |
| 7.42e-44 | FFCP PHASE1:Hg19::chr12:99548496..99548518,-#_d5943bca532e6f9a575622af19b407ed | p3@ANKS1B |
| 7.42e-44 | FFCP PHASE2:Hg19::chr12:99548496..99548518,-#_d5943bca532e6f9a575622af19b407ed | p3@ANKS1B |
| 7.71e-44 | FFCP PHASE2:Hg19::chr19:51017895..51017953,-#_5612d2c3335416e152cbb3755d95ced4 | p1@ASPDH |
| 7.71e-44 | FFCP PHASE1:Hg19::chr19:51017895..51017953,-#_5612d2c3335416e152cbb3755d95ced4 | p1@ASPDH |
| 1.25e-43 | FFCP PHASE2:Hg19::chr1:205012293..205012326,+#_b61d3f833eeca0c87679d794bdf64dc7 | p2@CNTN2 |
| 1.25e-43 | FFCP PHASE1:Hg19::chr1:205012293..205012326,+#_b61d3f833eeca0c87679d794bdf64dc7 | p2@CNTN2 |
| 1.98e-43 | FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_309151006d4fba66060b0601d6d13042 | p5@MAP2 |
| 1.98e-43 | FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_309151006d4fba66060b0601d6d13042 | p5@MAP2 |
| 2.0e-43 | FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_34ffdef7c2010d91a93f6b3790200d27 | p2@RFX4 |
| 2.0e-43 | FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_34ffdef7c2010d91a93f6b3790200d27 | p2@RFX4 |
| 2.85e-43 | FFCP PHASE1:Hg19::chr18:48086440..48086509,+#_33a091ffb927c9ac5d3397390f144d67 | p1@MAPK4 |
| 2.85e-43 | FFCP PHASE2:Hg19::chr18:48086440..48086509,+#_33a091ffb927c9ac5d3397390f144d67 | p1@MAPK4 |
| 3.61e-43 | FFCP PHASE2:Hg19::chr8:27115909..27115927,-#_0841628d17ef14a111259d677dbe503b | p1@STMN4 |
| 3.61e-43 | FFCP PHASE1:Hg19::chr8:27115909..27115927,-#_0841628d17ef14a111259d677dbe503b | p1@STMN4 |
| 3.85e-43 | FFCP PHASE1:Hg19::chr15:51973635..51973646,+#_2c71948d17e943ee17264434d666a988 | p4@SCG3 |
| 3.85e-43 | FFCP PHASE2:Hg19::chr15:51973635..51973646,+#_2c71948d17e943ee17264434d666a988 | p4@SCG3 |
| 6.69e-43 | FFCP PHASE2:Hg19::chr1:160051319..160051366,+#_1821b6d2394b707335ecc5c1ad1716cb | p1@KCNJ9 |
| 6.69e-43 | FFCP PHASE1:Hg19::chr1:160051319..160051366,+#_1821b6d2394b707335ecc5c1ad1716cb | p1@KCNJ9 |
| 7.97e-43 | FFCP PHASE2:Hg19::chr5:38556700..38556714,-#_af18b518391c2686b8c60d735e1b2299 | p3@LIFR |
| 7.97e-43 | FFCP PHASE1:Hg19::chr5:38556700..38556714,-#_af18b518391c2686b8c60d735e1b2299 | p3@LIFR |
| 1.39e-42 | FFCP PHASE2:Hg19::chr11:35440898..35440916,-#_e0bac904f1deaadb0f15232c1f3b97a7 | p2@SLC1A2 |
| 1.39e-42 | FFCP PHASE1:Hg19::chr11:35440898..35440916,-#_e0bac904f1deaadb0f15232c1f3b97a7 | p2@SLC1A2 |
| 1.49e-42 | FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_19a94ced9c50fa875c0a85aabc5bfdd9 | p1@SOX2-OT |
| 1.49e-42 | FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_19a94ced9c50fa875c0a85aabc5bfdd9 | p1@SOX2-OT |
| 1.58e-42 | FFCP PHASE1:Hg19::chr1:160039940..160039963,-#_3b1aea0510d615ab5e16ce3901a8fba6 | p1@KCNJ10 |
| 1.58e-42 | FFCP PHASE2:Hg19::chr1:160039940..160039963,-#_3b1aea0510d615ab5e16ce3901a8fba6 | p1@KCNJ10 |
| 1.81e-42 | FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_3ec4f1dcb9cb4f3923b2ba225ff5bcbe | p2@GFAP |
| 1.81e-42 | FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_3ec4f1dcb9cb4f3923b2ba225ff5bcbe | p2@GFAP |
| 2.09e-42 | FFCP PHASE1:Hg19::chr3:6902794..6902808,+#_4087ad525f9768932284bf99bb98ae4f | p1@GRM7 |
| 2.09e-42 | FFCP PHASE2:Hg19::chr3:6902794..6902808,+#_4087ad525f9768932284bf99bb98ae4f | p1@GRM7 |
| 2.14e-42 | FFCP PHASE1:Hg19::chr11:84028339..84028387,-#_ec387d650e7205c6b905aafaf0faee52 | p1@DLG2 |
| 2.14e-42 | FFCP PHASE2:Hg19::chr11:84028339..84028387,-#_ec387d650e7205c6b905aafaf0faee52 | p1@DLG2 |
| 2.14e-42 | FFCP PHASE1:Hg19::chr1:92634472..92634492,+#_ec387d650e7205c6b905aafaf0faee52 | p1@KIAA1107 |
| 2.14e-42 | FFCP PHASE2:Hg19::chr1:92634472..92634492,+#_ec387d650e7205c6b905aafaf0faee52 | p1@KIAA1107 |
| 2.27e-42 | FFCP PHASE2:Hg19::chr5:138211081..138211157,+#_332bcfa8d7f5b039f61075804ef1f88f | p3@CTNNA1 |
| 2.27e-42 | FFCP PHASE1:Hg19::chr5:138211081..138211157,+#_332bcfa8d7f5b039f61075804ef1f88f | p3@CTNNA1 |
| 2.33e-42 | FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_85c16a327cd15c5023ba4c873b8d65f8 | p1@LOC100507341 |
| 2.33e-42 | FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_85c16a327cd15c5023ba4c873b8d65f8 | p1@LOC100507341 |
| 2.51e-42 | FFCP PHASE2:Hg19::chr2:152830441..152830472,-#_20133644dbbb1c08791e09ac213e610c | p2@CACNB4 |
| 2.51e-42 | FFCP PHASE1:Hg19::chr2:152830441..152830472,-#_20133644dbbb1c08791e09ac213e610c | p2@CACNB4 |
| 2.91e-42 | FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_f85930e2987c453906278f555d522cd0 | p7@MAP2 |
| 2.91e-42 | FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_f85930e2987c453906278f555d522cd0 | p7@MAP2 |
| 4.93e-42 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_6843b2335a0729a9c4f976e65a0b10ca | p6@GPM6B |
| 4.93e-42 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_6843b2335a0729a9c4f976e65a0b10ca | p6@GPM6B |
| 5.56e-42 | FFCP PHASE1:Hg19::chr8:27115931..27115942,-#_0e794ed49a5e87a8a48cbe80ea9d8703 | p2@STMN4 |
| 5.56e-42 | FFCP PHASE2:Hg19::chr8:27115931..27115942,-#_0e794ed49a5e87a8a48cbe80ea9d8703 | p2@STMN4 |
| 6.3e-42 | FFCP PHASE2:Hg19::chr17:76719615..76719624,-#_47fc61225c7a18f39e0b2272ef5f2627 | p9@CYTH1 |
| 6.3e-42 | FFCP PHASE1:Hg19::chr17:76719615..76719624,-#_47fc61225c7a18f39e0b2272ef5f2627 | p9@CYTH1 |
| 7.18e-42 | FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_8482854aca4fa355e3063be098e09c74 | p9@PRKACB |
| 7.18e-42 | FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_8482854aca4fa355e3063be098e09c74 | p9@PRKACB |
| 8.97e-42 | FFCP PHASE1:Hg19::chr20:58179554..58179578,+#_7f4c26b86bc1a22ed155c5c885488c61 | p2@PHACTR3 |
| 8.97e-42 | FFCP PHASE2:Hg19::chr20:58179554..58179578,+#_7f4c26b86bc1a22ed155c5c885488c61 | p2@PHACTR3 |
| 9.36e-42 | FFCP PHASE2:Hg19::chr20:58179582..58179601,+#_dfcaa13277caff63820d23c1f99b57ea | p1@PHACTR3 |
| 9.36e-42 | FFCP PHASE1:Hg19::chr20:58179582..58179601,+#_dfcaa13277caff63820d23c1f99b57ea | p1@PHACTR3 |
| 9.95e-42 | FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_fae7a7ddf6b4ffec9addf1254902caab | p8@DST |
| 9.95e-42 | FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_fae7a7ddf6b4ffec9addf1254902caab | p8@DST |
| 1.12e-41 | FFCP PHASE2:Hg19::chr18:55019772..55019837,+#_730ac6a0a80d27d48423f29cc028c7d3 | p1@ST8SIA3 |
| 1.12e-41 | FFCP PHASE1:Hg19::chr18:55019772..55019837,+#_730ac6a0a80d27d48423f29cc028c7d3 | p1@ST8SIA3 |
| 1.22e-41 | FFCP PHASE1:Hg19::chr10:60936360..60936423,+#_a3585b2871981cc281550ffe2d62e319 | p1@PHYHIPL |
| 1.22e-41 | FFCP PHASE2:Hg19::chr10:60936360..60936423,+#_a3585b2871981cc281550ffe2d62e319 | p1@PHYHIPL |
| 1.39e-41 | FFCP PHASE1:Hg19::chr1:156217831..156217867,-#_146dec7b7af3fb87b8ddcba1ff9b81c3 | p1@PAQR6 |
| 1.39e-41 | FFCP PHASE2:Hg19::chr1:156217831..156217867,-#_146dec7b7af3fb87b8ddcba1ff9b81c3 | p1@PAQR6 |
| 1.42e-41 | FFCP PHASE1:Hg19::chr8:85618155..85618173,+#_dffd5a5bd465098e52fa580d526b9f6b | p3@RALYL |
| 1.42e-41 | FFCP PHASE2:Hg19::chr8:85618155..85618173,+#_dffd5a5bd465098e52fa580d526b9f6b | p3@RALYL |
| 1.67e-41 | FFCP PHASE2:Hg19::chr12:99548524..99548550,-#_6601d20502174ef13f9bdd6741731b67 | p2@ANKS1B |
| 1.67e-41 | FFCP PHASE1:Hg19::chr12:99548524..99548550,-#_6601d20502174ef13f9bdd6741731b67 | p2@ANKS1B |
| 1.71e-41 | FFCP PHASE2:Hg19::chr7:154002286..154002307,+#_20e87d7f7ec948d649299e2a91e6dcf9 | p3@DPP6 |
| 1.71e-41 | FFCP PHASE1:Hg19::chr7:154002286..154002307,+#_20e87d7f7ec948d649299e2a91e6dcf9 | p3@DPP6 |
| 1.92e-41 | FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_ce5d7fe22cd42cb63ae842f846057284 | p2@uc002fch.1 |
| 1.92e-41 | FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_ce5d7fe22cd42cb63ae842f846057284 | p2@uc002fch.1 |
| 2.03e-41 | FFCP PHASE2:Hg19::chr7:137028534..137028548,-#_b489a326ce21e3c0beeb613ee960ea34 | p3@PTN |
| 2.03e-41 | FFCP PHASE1:Hg19::chr7:137028534..137028548,-#_b489a326ce21e3c0beeb613ee960ea34 | p3@PTN |
