FFCP PHASE1:Hg19::chr10:122836980..122836997,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:122836980..122836997,- | |||
|description=CAGE_peak_at_chr10:122836980..122836997,- | |description=CAGE_peak_at_chr10:122836980..122836997,- | ||
|id=chr10:122836980..122836997,- | |id=chr10:122836980..122836997,- | ||
|ontology_enrichment_celltype=CL:0002251!1.89e-10!21;CL:0002076!6.82e-07!43 | |ontology_enrichment_celltype=CL:0002251!1.89e-10!21;CL:0002076!6.82e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002251;1.84e-13;20!CL:0000346;1.04e-10;3!CL:1000428;1.04e-10;3!CL:0002563;2.35e-08;4!CL:0002559;6.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,1.92e-13,20;CL:0000346,1.09e-10,3;CL:1000428,1.09e-10,3;CL:0002563,2.61e-08,4;CL:0002559,6.39e-07,5;CL:0002076,9.42e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.33e-29;1!UBERON:0008814;1.15e-15;2!UBERON:0010056;1.15e-15;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;4.12e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.04e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.41e-14!9;UBERON:0001557!1.67e-11!19;UBERON:0000344!6.64e-11!12;UBERON:0001007!4.08e-08!155;UBERON:0001555!4.08e-08!155;UBERON:0007026!4.08e-08!155;UBERON:0003729!1.28e-07!5;UBERON:0001004!2.72e-07!72;UBERON:0004119!5.18e-07!169;UBERON:0000925!5.18e-07!169;UBERON:0006595!5.18e-07!169;UBERON:0004921!6.55e-07!129;UBERON:0004185!6.55e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;9.99e-30;1!UBERON:0006518;9.99e-30;1!UBERON:0008949;9.99e-30;1!UBERON:0000101;9.99e-30;1!UBERON:0002167;9.99e-30;1!UBERON:0003343;2.94e-29;4!UBERON:0004785;2.94e-29;4!UBERON:0000974;6.80e-20;6!UBERON:0000344;1.84e-13;20!UBERON:0001723;6.73e-11;3!UBERON:0001033;6.73e-11;3!UBERON:0000412;1.04e-10;3!UBERON:0001992;1.04e-10;3!UBERON:0003729;9.72e-10;13!UBERON:0001242;2.35e-08;4!UBERON:0001262;2.35e-08;4!UBERON:0004786;2.35e-08;4!UBERON:0004808;2.35e-08;4!UBERON:0001277;2.35e-08;4!UBERON:0000161;5.92e-07;19!UBERON:0000166;5.92e-07;19!UBERON:0002073;6.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,9.99e-30,1;UBERON:0006518,9.99e-30,1;UBERON:0008949,9.99e-30,1;UBERON:0000101,9.99e-30,1;UBERON:0002167,9.99e-30,1;UBERON:0003343,2.74e-29,4;UBERON:0004785,2.74e-29,4;UBERON:0000344,1.92e-13,20;UBERON:0000974,2.24e-12,10;UBERON:0001723,6.73e-11,3;UBERON:0001033,6.73e-11,3;UBERON:0010056,6.73e-11,3;UBERON:0000412,1.09e-10,3;UBERON:0001992,1.09e-10,3;UBERON:0003729,9.51e-10,13;UBERON:0001242,2.61e-08,4;UBERON:0001262,2.61e-08,4;UBERON:0004786,2.61e-08,4;UBERON:0004808,2.61e-08,4;UBERON:0001277,2.61e-08,4;UBERON:0004923,2.54e-07,66;UBERON:0002073,6.39e-07,5;UBERON:0005086,6.39e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0,0,0.354920400119532,0,0,0.55146986366197,0.653638332277218,0.474541238222193,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.179515288819544,1.95565269459615,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0.78602152549833,3.31391244277756,0,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533458648470704,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65085738669511,5.31418064291556,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0,0,0.354920400119532,0,0,0.55146986366197,0.653638332277218,0.474541238222193,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.179515288819544,1.95565269459615,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0.78602152549833,3.31391244277756,0,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533458648470704,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65085738669511,5.31418064291556,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr10:122836980..122836997,- | |short_description=p@chr10:122836980..122836997,- | ||
}} | }} |
Latest revision as of 11:05, 23 July 2015
Short description: | p@chr10:122836980..122836997, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:122836980..122836997, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 1.92e-13 | 20 |
hair follicle dermal papilla cell | 1.09e-10 | 3 |
stem cell of epidermis | 1.09e-10 | 3 |
intestinal epithelial cell | 2.61e-08 | 4 |
hair follicle cell | 6.39e-07 | 5 |
endo-epithelial cell | 9.42e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 9.99e-30 | 1 |
right lung lobe | 9.99e-30 | 1 |
lower lobe of lung | 9.99e-30 | 1 |
lobe of lung | 9.99e-30 | 1 |
right lung | 9.99e-30 | 1 |
mucosa of oral region | 2.74e-29 | 4 |
respiratory system mucosa | 2.74e-29 | 4 |
mucosa | 1.92e-13 | 20 |
neck | 2.24e-12 | 10 |
tongue | 6.73e-11 | 3 |
gustatory system | 6.73e-11 | 3 |
future tongue | 6.73e-11 | 3 |
dermal papilla | 1.09e-10 | 3 |
papillary layer of dermis | 1.09e-10 | 3 |
mouth mucosa | 9.51e-10 | 13 |
intestinal mucosa | 2.61e-08 | 4 |
wall of intestine | 2.61e-08 | 4 |
gastrointestinal system mucosa | 2.61e-08 | 4 |
gastrointestinal system epithelium | 2.61e-08 | 4 |
intestinal epithelium | 2.61e-08 | 4 |
organ component layer | 2.54e-07 | 66 |
hair follicle | 6.39e-07 | 5 |
hair follicle placode | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.04e-09 | 14 |