FFCP PHASE1:Hg19::chr13:58632269..58632270,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:58632269..58632270,+ | |||
|coexpression_cluster_id=C14 | |coexpression_cluster_id=C14 | ||
|description=CAGE_peak_at_chr13:58632269..58632270,+ | |description=CAGE_peak_at_chr13:58632269..58632270,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000764!3.13e-21!2;CL:0000765!3.13e-21!2;CL:0000050!3.13e-21!2;CL:0000038!3.13e-21!2;CL:0000558!3.13e-21!2;CL:0000547!3.13e-21!2;CL:0000549!3.13e-21!2;CL:0000550!3.13e-21!2;CL:0000552!3.13e-21!2 | |ontology_enrichment_celltype=CL:0000764!3.13e-21!2;CL:0000765!3.13e-21!2;CL:0000050!3.13e-21!2;CL:0000038!3.13e-21!2;CL:0000558!3.13e-21!2;CL:0000547!3.13e-21!2;CL:0000549!3.13e-21!2;CL:0000550!3.13e-21!2;CL:0000552!3.13e-21!2 | ||
|ontology_enrichment_celltype_v019=CL:0000764;1.08e-36;2!CL:0000558;1.08e-36;2 | |ontology_enrichment_celltype_v019=CL:0000764;1.08e-36;2!CL:0000558;1.08e-36;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.18e-36,2;CL:0000765,1.18e-36,2;CL:0000050,1.18e-36,2;CL:0000038,1.18e-36,2;CL:0000558,1.18e-36,2;CL:0000547,1.18e-36,2;CL:0000549,1.18e-36,2;CL:0000550,1.18e-36,2;CL:0000552,1.18e-36,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.44e-53!15;UBERON:0000179!1.44e-53!15;UBERON:0000463!1.44e-53!15;UBERON:0007023!8.34e-13!115;UBERON:0002390!3.13e-12!102;UBERON:0003061!3.13e-12!102;UBERON:0002426!2.68e-11!1;UBERON:0003831!2.68e-11!1;UBERON:0003898!2.68e-11!1;UBERON:0004830!2.68e-11!1;UBERON:0001774!2.68e-11!1;UBERON:0003830!2.68e-11!1;UBERON:0005175!2.68e-11!1;UBERON:0003897!2.68e-11!1;UBERON:0001103!2.68e-11!1;UBERON:0010084!2.68e-11!1;UBERON:0002193!5.52e-11!112;UBERON:0002046!9.95e-09!5;UBERON:0004117!9.95e-09!5;UBERON:0007689!9.95e-09!5;UBERON:0007123!9.95e-09!5;UBERON:0003091!9.95e-09!5;UBERON:0009722!1.68e-08!11;UBERON:0007690!1.68e-08!11 | |ontology_enrichment_uberon=UBERON:0000178!1.44e-53!15;UBERON:0000179!1.44e-53!15;UBERON:0000463!1.44e-53!15;UBERON:0007023!8.34e-13!115;UBERON:0002390!3.13e-12!102;UBERON:0003061!3.13e-12!102;UBERON:0002426!2.68e-11!1;UBERON:0003831!2.68e-11!1;UBERON:0003898!2.68e-11!1;UBERON:0004830!2.68e-11!1;UBERON:0001774!2.68e-11!1;UBERON:0003830!2.68e-11!1;UBERON:0005175!2.68e-11!1;UBERON:0003897!2.68e-11!1;UBERON:0001103!2.68e-11!1;UBERON:0010084!2.68e-11!1;UBERON:0002193!5.52e-11!112;UBERON:0002046!9.95e-09!5;UBERON:0004117!9.95e-09!5;UBERON:0007689!9.95e-09!5;UBERON:0007123!9.95e-09!5;UBERON:0003091!9.95e-09!5;UBERON:0009722!1.68e-08!11;UBERON:0007690!1.68e-08!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.86e-76;15!UBERON:0000179;3.86e-76;15!UBERON:0000463;3.86e-76;15!UBERON:0002390;1.39e-33;32!UBERON:0002193;3.96e-19;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;3.86e-76;15!UBERON:0000179;3.86e-76;15!UBERON:0000463;3.86e-76;15!UBERON:0002390;1.39e-33;32!UBERON:0002193;3.96e-19;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.33e-76,15;UBERON:0000179,3.33e-76,15;UBERON:0000463,3.33e-76,15;UBERON:0007023,3.13e-15,114;UBERON:0002390,2.94e-11,98;UBERON:0003061,2.94e-11,98;UBERON:0004535,3.53e-10,109;UBERON:0002193,3.53e-10,108;UBERON:0001009,6.84e-10,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28889814968902,2.87578996127391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2234282769651,10.7049208999933,1.70894156152249,1.42939065274673,0.411362273086194,7.13320642311989,7.02040868409549,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7638164642858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28889814968902,2.87578996127391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2234282769651,10.7049208999933,1.70894156152249,1.42939065274673,0.411362273086194,7.13320642311989,7.02040868409549,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7638164642858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:58632269..58632270,+ | |short_description=p@chr13:58632269..58632270,+ | ||
}} | }} |
Latest revision as of 16:52, 24 July 2015
Short description: | p@chr13:58632269..58632270, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:58632269..58632270, + |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.18e-36 | 2 |
erythroblast | 1.18e-36 | 2 |
megakaryocyte-erythroid progenitor cell | 1.18e-36 | 2 |
erythroid progenitor cell | 1.18e-36 | 2 |
reticulocyte | 1.18e-36 | 2 |
proerythroblast | 1.18e-36 | 2 |
basophilic erythroblast | 1.18e-36 | 2 |
polychromatophilic erythroblast | 1.18e-36 | 2 |
orthochromatic erythroblast | 1.18e-36 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 3.33e-76 | 15 |
haemolymphatic fluid | 3.33e-76 | 15 |
organism substance | 3.33e-76 | 15 |
adult organism | 3.13e-15 | 114 |
hematopoietic system | 2.94e-11 | 98 |
blood island | 2.94e-11 | 98 |
cardiovascular system | 3.53e-10 | 109 |
hemolymphoid system | 3.53e-10 | 108 |
circulatory system | 6.84e-10 | 112 |